Clover icon

Coverage Report

  1. Project Clover database Mon Nov 11 2024 16:01:40 GMT
  2. Package jalview.schemes

File NucleotideAmbiguityColourScheme.java

 

Coverage histogram

../../img/srcFileCovDistChart10.png
0% of files have more coverage

Code metrics

0
4
4
1
60
27
4
1
1
4
1

Classes

Class Line # Actions
NucleotideAmbiguityColourScheme 26 4 4
1.0100%
 

Contributing tests

This file is covered by 185 tests. .

Source view

1    /*
2    * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3    * Copyright (C) $$Year-Rel$$ The Jalview Authors
4    *
5    * This file is part of Jalview.
6    *
7    * Jalview is free software: you can redistribute it and/or
8    * modify it under the terms of the GNU General Public License
9    * as published by the Free Software Foundation, either version 3
10    * of the License, or (at your option) any later version.
11    *
12    * Jalview is distributed in the hope that it will be useful, but
13    * WITHOUT ANY WARRANTY; without even the implied warranty
14    * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15    * PURPOSE. See the GNU General Public License for more details.
16    *
17    * You should have received a copy of the GNU General Public License
18    * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19    * The Jalview Authors are detailed in the 'AUTHORS' file.
20    */
21    package jalview.schemes;
22   
23    import jalview.api.AlignViewportI;
24    import jalview.datamodel.AnnotatedCollectionI;
25   
 
26    public class NucleotideAmbiguityColourScheme extends ResidueColourScheme
27    {
28    /**
29    * Creates a new NucleotideColourScheme object.
30    */
 
31  51 toggle public NucleotideAmbiguityColourScheme()
32    {
33  51 super(ResidueProperties.nucleotideIndex,
34    ResidueProperties.nucleotideAmbiguity);
35    }
36   
 
37  591 toggle @Override
38    public boolean isNucleotideSpecific()
39    {
40  591 return true;
41    }
42   
 
43  610 toggle @Override
44    public String getSchemeName()
45    {
46  610 return JalviewColourScheme.NucleotideAmbiguity.toString();
47    }
48   
49    /**
50    * Returns a new instance of this colour scheme with which the given data may
51    * be coloured
52    */
 
53  1 toggle @Override
54    public ColourSchemeI getInstance(AlignViewportI view,
55    AnnotatedCollectionI coll)
56    {
57  1 return new NucleotideAmbiguityColourScheme();
58    }
59   
60    }
  • Report generated by OpenClover v 4.4.1 on Mon Nov 11 2024 16:09:07 GMT using coverage data from Mon Nov 11 2024 16:08:49 GMT.
  • OpenClover is free and open-source software.