Coverage Report
File GTreePanel.java
Coverage histogram
37% of files have more coverage
Classes
| Class | Line # | Actions | |||
|---|---|---|---|---|---|
| GTreePanel | 41 | 71 | 31 |
Contributing tests
This file is covered by 8 tests.
.
Source view
| 1 | /* | |
| 2 | * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) | |
| 3 | * Copyright (C) $$Year-Rel$$ The Jalview Authors | |
| 4 | * | |
| 5 | * This file is part of Jalview. | |
| 6 | * | |
| 7 | * Jalview is free software: you can redistribute it and/or | |
| 8 | * modify it under the terms of the GNU General Public License | |
| 9 | * as published by the Free Software Foundation, either version 3 | |
| 10 | * of the License, or (at your option) any later version. | |
| 11 | * | |
| 12 | * Jalview is distributed in the hope that it will be useful, but | |
| 13 | * WITHOUT ANY WARRANTY; without even the implied warranty | |
| 14 | * of MERCHANTABILITY or FITNESS FOR A PARTICULAR | |
| 15 | * PURPOSE. See the GNU General Public License for more details. | |
| 16 | * | |
| 17 | * You should have received a copy of the GNU General Public License | |
| 18 | * along with Jalview. If not, see <http://www.gnu.org/licenses/>. | |
| 19 | * The Jalview Authors are detailed in the 'AUTHORS' file. | |
| 20 | */ | |
| 21 | package jalview.jbgui; | |
| 22 | ||
| 23 | import java.awt.BorderLayout; | |
| 24 | import java.awt.Color; | |
| 25 | import java.awt.event.ActionEvent; | |
| 26 | import java.awt.event.ActionListener; | |
| 27 | ||
| 28 | import javax.swing.JCheckBoxMenuItem; | |
| 29 | import javax.swing.JInternalFrame; | |
| 30 | import javax.swing.JMenu; | |
| 31 | import javax.swing.JMenuBar; | |
| 32 | import javax.swing.JMenuItem; | |
| 33 | import javax.swing.JScrollPane; | |
| 34 | import javax.swing.event.MenuEvent; | |
| 35 | import javax.swing.event.MenuListener; | |
| 36 | ||
| 37 | import jalview.util.ImageMaker.TYPE; | |
| 38 | import jalview.util.MessageManager; | |
| 39 | ||
| 40 | @SuppressWarnings("serial") | |
| 41 | public class GTreePanel extends JInternalFrame | |
| 42 | { | |
| 43 | BorderLayout borderLayout1 = new BorderLayout(); | |
| 44 | ||
| 45 | public JScrollPane scrollPane = new JScrollPane(); | |
| 46 | ||
| 47 | JMenuBar jMenuBar1 = new JMenuBar(); | |
| 48 | ||
| 49 | JMenu fileMenu = new JMenu(); | |
| 50 | ||
| 51 | JMenuItem saveAsNewick = new JMenuItem(); | |
| 52 | ||
| 53 | JMenuItem printMenu = new JMenuItem(); | |
| 54 | ||
| 55 | protected JMenu viewMenu = new JMenu(); | |
| 56 | ||
| 57 | public JMenuItem font = new JMenuItem(); | |
| 58 | ||
| 59 | public JMenuItem sortAssocViews = new JMenuItem(); | |
| 60 | ||
| 61 | public JCheckBoxMenuItem bootstrapMenu = new JCheckBoxMenuItem(); | |
| 62 | ||
| 63 | public JCheckBoxMenuItem distanceMenu = new JCheckBoxMenuItem(); | |
| 64 | ||
| 65 | public JCheckBoxMenuItem fitToWindow = new JCheckBoxMenuItem(); | |
| 66 | ||
| 67 | public JCheckBoxMenuItem placeholdersMenu = new JCheckBoxMenuItem(); | |
| 68 | ||
| 69 | JMenuItem pngTree = new JMenuItem(); | |
| 70 | ||
| 71 | JMenuItem epsTree = new JMenuItem(); | |
| 72 | ||
| 73 | JMenu saveAsMenu = new JMenu(); | |
| 74 | ||
| 75 | JMenuItem textbox = new JMenuItem(); | |
| 76 | ||
| 77 | public JMenuItem originalSeqData = new JMenuItem(); | |
| 78 | ||
| 79 | protected JMenu associateLeavesMenu = new JMenu(); | |
| 80 | ||
| 81 | 14 |  public GTreePanel() |
| 82 | { | |
| 83 | 14 | try |
| 84 | { | |
| 85 | 14 | jbInit(); |
| 86 | 14 | this.setJMenuBar(jMenuBar1); |
| 87 | } catch (Exception e) | |
| 88 | { | |
| 89 | 0 | e.printStackTrace(); |
| 90 | } | |
| 91 | } | |
| 92 | ||
| 93 | 14 | private void jbInit() throws Exception |
| 94 | { | |
| 95 | 14 | setFrameIcon(null); |
| 96 | 14 | setName("jalview-tree"); |
| 97 | 14 | this.getContentPane().setLayout(borderLayout1); |
| 98 | 14 | this.setBackground(Color.white); |
| 99 | 14 | this.setFont(new java.awt.Font("Verdana", 0, 12)); |
| 100 | 14 | scrollPane.setOpaque(false); |
| 101 | 14 | fileMenu.setText(MessageManager.getString("action.file")); |
| 102 | 14 | saveAsNewick.setText(MessageManager.getString("label.newick_format")); |
| 103 | 14 | saveAsNewick.addActionListener(new ActionListener() |
| 104 | { | |
| 105 | 0 | @Override |
| 106 | public void actionPerformed(ActionEvent e) | |
| 107 | { | |
| 108 | 0 | saveAsNewick_actionPerformed(e); |
| 109 | } | |
| 110 | }); | |
| 111 | 14 | printMenu.setText(MessageManager.getString("action.print")); |
| 112 | 14 | printMenu.addActionListener(new java.awt.event.ActionListener() |
| 113 | { | |
| 114 | 0 | @Override |
| 115 | public void actionPerformed(ActionEvent e) | |
| 116 | { | |
| 117 | 0 | printMenu_actionPerformed(e); |
| 118 | } | |
| 119 | }); | |
| 120 | 14 | viewMenu.setText(MessageManager.getString("action.view")); |
| 121 | 14 | viewMenu.addMenuListener(new MenuListener() |
| 122 | { | |
| 123 | 0 | @Override |
| 124 | public void menuSelected(MenuEvent e) | |
| 125 | { | |
| 126 | 0 | viewMenu_menuSelected(); |
| 127 | } | |
| 128 | ||
| 129 | 0 | @Override |
| 130 | public void menuDeselected(MenuEvent e) | |
| 131 | { | |
| 132 | } | |
| 133 | ||
| 134 | 0 | @Override |
| 135 | public void menuCanceled(MenuEvent e) | |
| 136 | { | |
| 137 | } | |
| 138 | }); | |
| 139 | 14 | sortAssocViews.setText( |
| 140 | MessageManager.getString("label.sort_alignment_by_tree")); | |
| 141 | 14 | sortAssocViews.addActionListener(new java.awt.event.ActionListener() |
| 142 | { | |
| 143 | 0 | @Override |
| 144 | public void actionPerformed(ActionEvent e) | |
| 145 | { | |
| 146 | 0 | sortByTree_actionPerformed(); |
| 147 | } | |
| 148 | }); | |
| 149 | 14 | font.setText(MessageManager.getString("action.font")); |
| 150 | 14 | font.addActionListener(new java.awt.event.ActionListener() |
| 151 | { | |
| 152 | 0 | @Override |
| 153 | public void actionPerformed(ActionEvent e) | |
| 154 | { | |
| 155 | 0 | font_actionPerformed(e); |
| 156 | } | |
| 157 | }); | |
| 158 | 14 | bootstrapMenu.setText( |
| 159 | MessageManager.getString("label.show_bootstrap_values")); | |
| 160 | 14 | bootstrapMenu.addActionListener(new java.awt.event.ActionListener() |
| 161 | { | |
| 162 | 0 | @Override |
| 163 | public void actionPerformed(ActionEvent e) | |
| 164 | { | |
| 165 | 0 | bootstrapMenu_actionPerformed(e); |
| 166 | } | |
| 167 | }); | |
| 168 | 14 | distanceMenu.setText(MessageManager.getString("label.show_distances")); |
| 169 | 14 | distanceMenu.addActionListener(new java.awt.event.ActionListener() |
| 170 | { | |
| 171 | 0 | @Override |
| 172 | public void actionPerformed(ActionEvent e) | |
| 173 | { | |
| 174 | 0 | distanceMenu_actionPerformed(e); |
| 175 | } | |
| 176 | }); | |
| 177 | 14 | fitToWindow.setSelected(true); |
| 178 | 14 | fitToWindow.setText(MessageManager.getString("label.fit_to_window")); |
| 179 | 14 | fitToWindow.addActionListener(new java.awt.event.ActionListener() |
| 180 | { | |
| 181 | 0 | @Override |
| 182 | public void actionPerformed(ActionEvent e) | |
| 183 | { | |
| 184 | 0 | fitToWindow_actionPerformed(e); |
| 185 | } | |
| 186 | }); | |
| 187 | 14 | epsTree.setText("EPS"); |
| 188 | 14 | epsTree.addActionListener(new java.awt.event.ActionListener() |
| 189 | { | |
| 190 | 0 | @Override |
| 191 | public void actionPerformed(ActionEvent e) | |
| 192 | { | |
| 193 | 0 | writeTreeImage(TYPE.EPS); |
| 194 | } | |
| 195 | }); | |
| 196 | 14 | pngTree.setText("PNG"); |
| 197 | 14 | pngTree.addActionListener(new java.awt.event.ActionListener() |
| 198 | { | |
| 199 | 0 | @Override |
| 200 | public void actionPerformed(ActionEvent e) | |
| 201 | { | |
| 202 | 0 | writeTreeImage(TYPE.PNG); |
| 203 | } | |
| 204 | }); | |
| 205 | 14 | saveAsMenu.setText(MessageManager.getString("action.save_as")); |
| 206 | 14 | placeholdersMenu.setToolTipText(MessageManager.getString( |
| 207 | "label.marks_leaves_tree_not_associated_with_sequence")); | |
| 208 | 14 | placeholdersMenu.setText( |
| 209 | MessageManager.getString("label.mark_unlinked_leaves")); | |
| 210 | 14 | placeholdersMenu.addActionListener(new ActionListener() |
| 211 | { | |
| 212 | 0 | @Override |
| 213 | public void actionPerformed(ActionEvent e) | |
| 214 | { | |
| 215 | 0 | placeholdersMenu_actionPerformed(e); |
| 216 | } | |
| 217 | }); | |
| 218 | 14 | textbox.setText(MessageManager.getString("label.out_to_textbox")); |
| 219 | 14 | textbox.addActionListener(new ActionListener() |
| 220 | { | |
| 221 | 0 | @Override |
| 222 | public void actionPerformed(ActionEvent e) | |
| 223 | { | |
| 224 | 0 | textbox_actionPerformed(e); |
| 225 | } | |
| 226 | }); | |
| 227 | 14 | originalSeqData.setText(MessageManager.getString("label.input_data")); |
| 228 | 14 | originalSeqData.addActionListener(new ActionListener() |
| 229 | { | |
| 230 | 0 | @Override |
| 231 | public void actionPerformed(ActionEvent e) | |
| 232 | { | |
| 233 | 0 | originalSeqData_actionPerformed(e); |
| 234 | } | |
| 235 | }); | |
| 236 | 14 | associateLeavesMenu.setText( |
| 237 | MessageManager.getString("label.associate_leaves_with")); | |
| 238 | 14 | this.getContentPane().add(scrollPane, BorderLayout.CENTER); |
| 239 | 14 | jMenuBar1.add(fileMenu); |
| 240 | 14 | jMenuBar1.add(viewMenu); |
| 241 | 14 | fileMenu.add(saveAsMenu); |
| 242 | 14 | fileMenu.add(textbox); |
| 243 | 14 | fileMenu.add(printMenu); |
| 244 | 14 | fileMenu.add(originalSeqData); |
| 245 | 14 | viewMenu.add(fitToWindow); |
| 246 | 14 | viewMenu.add(font); |
| 247 | 14 | viewMenu.add(distanceMenu); |
| 248 | 14 | viewMenu.add(bootstrapMenu); |
| 249 | 14 | viewMenu.add(placeholdersMenu); |
| 250 | 14 | viewMenu.add(sortAssocViews); |
| 251 | 14 | viewMenu.add(associateLeavesMenu); |
| 252 | 14 | saveAsMenu.add(saveAsNewick); |
| 253 | 14 | saveAsMenu.add(epsTree); |
| 254 | 14 | saveAsMenu.add(pngTree); |
| 255 | } | |
| 256 | ||
| 257 | 0 | public void printMenu_actionPerformed(ActionEvent e) |
| 258 | { | |
| 259 | } | |
| 260 | ||
| 261 | 0 | public void font_actionPerformed(ActionEvent e) |
| 262 | { | |
| 263 | } | |
| 264 | ||
| 265 | 0 | public void distanceMenu_actionPerformed(ActionEvent e) |
| 266 | { | |
| 267 | } | |
| 268 | ||
| 269 | 0 | public void bootstrapMenu_actionPerformed(ActionEvent e) |
| 270 | { | |
| 271 | } | |
| 272 | ||
| 273 | 0 | public void fitToWindow_actionPerformed(ActionEvent e) |
| 274 | { | |
| 275 | } | |
| 276 | ||
| 277 | 0 | public void writeTreeImage(TYPE imageType) |
| 278 | { | |
| 279 | } | |
| 280 | ||
| 281 | 0 | public void saveAsNewick_actionPerformed(ActionEvent e) |
| 282 | { | |
| 283 | } | |
| 284 | ||
| 285 | 0 | public void placeholdersMenu_actionPerformed(ActionEvent e) |
| 286 | { | |
| 287 | } | |
| 288 | ||
| 289 | 0 | public void textbox_actionPerformed(ActionEvent e) |
| 290 | { | |
| 291 | } | |
| 292 | ||
| 293 | 0 | public void fullid_actionPerformed(ActionEvent e) |
| 294 | { | |
| 295 | ||
| 296 | } | |
| 297 | ||
| 298 | 0 | public void originalSeqData_actionPerformed(ActionEvent e) |
| 299 | { | |
| 300 | ||
| 301 | } | |
| 302 | ||
| 303 | 0 | public void viewMenu_menuSelected() |
| 304 | { | |
| 305 | } | |
| 306 | ||
| 307 | 0 | public void sortByTree_actionPerformed() |
| 308 | { | |
| 309 | ||
| 310 | } | |
| 311 | ||
| 312 | } |