Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
Mapping	48	6	6	0.550%	Show methods

Class Mapping

Class Mapping	Line # 48	Total Statements 6	Complexity 6	TOTAL Coverage 0.550%
getSequence() : Sequence   getSequence() : Sequence	6565	1.01	1.01	1.0 1.0100%
setSequence(Sequence) : void   setSequence(Sequence) : void	7777	1.01	1.01	0.0 0.00%
getDseqFor() : String   getDseqFor() : String	8888	1.01	1.01	1.0 1.0100%
setDseqFor(String) : void   setDseqFor(String) : void	100100	1.01	1.01	1.0 1.0100%
getMappingType() : String   getMappingType() : String	111111	1.01	1.01	0.0 0.00%
setMappingType(String) : void   setMappingType(String) : void	123123	1.01	1.01	0.0 0.00%

 

Contributing tests

Contributing tests

Select all

	Test contribution	Test	Result	Actions
	0.5	jalview.project.Jalview2xmlTests.testStoreAndRecoverGeneLocusjalview.project.Jalview2xmlTests.testStoreAndRecoverGeneLocus	1PASS
	0.33333334	jalview.io.CrossRef2xmlTests.openCrossrefsForEnsemblTwicejalview.io.CrossRef2xmlTests.openCrossrefsForEnsemblTwice	1PASS

 

Source view

1		//
2		// This file was generated by the Eclipse Implementation of JAXB, v2.3.3
3		// See https://eclipse-ee4j.github.io/jaxb-ri
4		// Any modifications to this file will be lost upon recompilation of the source schema.
5		// Generated on: 2023.11.01 at 07:03:09 PM GMT
6		//
7
8		package jalview.xml.binding.jalview;
9
10		import javax.xml.bind.annotation.XmlAccessType;
11		import javax.xml.bind.annotation.XmlAccessorType;
12		import javax.xml.bind.annotation.XmlAttribute;
13		import javax.xml.bind.annotation.XmlElement;
14		import javax.xml.bind.annotation.XmlRootElement;
15		import javax.xml.bind.annotation.XmlType;
16
17		/**
18		*
19		* Represent the jalview.datamodel.Mapping object - it also provides a way of
20		* storing sequences that are mapped 'to' without adding them to the sequence
21		* set (which will mean they are then added to the alignment too).
22		*
23		*
24		* <p>Java class for anonymous complex type.
25		*
26		* <p>The following schema fragment specifies the expected content
27		* contained within this class.
28		*
29		* <pre> <complexType> <complexContent>
30		* <extension
31		* base="{www.vamsas.ac.uk/jalview/version2}mapListType">
32		* <sequence> <choice minOccurs="0"> <element
33		* ref="{www.vamsas.ac.uk/jalview/version2}Sequence"/> <element
34		* name="dseqFor"> <simpleType> <restriction
35		* base="{http://www.w3.org/2001/XMLSchema}string">
36		* </restriction> </simpleType>
37		* </element> </choice> </sequence>
38		* <attribute name="mappingType"
39		* type="{http://www.w3.org/2001/XMLSchema}string" />
40		* </extension> </complexContent>
41		* </complexType> </pre>
42		*
43		*
44		*/
45		@XmlAccessorType(XmlAccessType.FIELD)
46		@XmlType(name = "", propOrder = { "sequence", "dseqFor" })
47		@XmlRootElement(name = "Mapping")
		50% Uncovered Elements: 6 (12) Complexity: 6 Complexity Density: 1
48		public class Mapping extends MapListType
49		{
50
51		@XmlElement(name = "Sequence")
52		protected Sequence sequence;
53
54		protected String dseqFor;
55
56		@XmlAttribute(name = "mappingType")
57		protected String mappingType;
58
59		/**
60		* Gets the value of the sequence property.
61		*
62		* @return possible object is {@link Sequence }
63		*
64		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
65	23	public Sequence getSequence()...
66		{
67	23	return sequence;
68		}
69
70		/**
71		* Sets the value of the sequence property.
72		*
73		* @param value
74		* allowed object is {@link Sequence }
75		*
76		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
77	0	public void setSequence(Sequence value)...
78		{
79	0	this.sequence = value;
80		}
81
82		/**
83		* Gets the value of the dseqFor property.
84		*
85		* @return possible object is {@link String }
86		*
87		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
88	69	public String getDseqFor()...
89		{
90	69	return dseqFor;
91		}
92
93		/**
94		* Sets the value of the dseqFor property.
95		*
96		* @param value
97		* allowed object is {@link String }
98		*
99		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
100	1	public void setDseqFor(String value)...
101		{
102	1	this.dseqFor = value;
103		}
104
105		/**
106		* Gets the value of the mappingType property.
107		*
108		* @return possible object is {@link String }
109		*
110		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
111	0	public String getMappingType()...
112		{
113	0	return mappingType;
114		}
115
116		/**
117		* Sets the value of the mappingType property.
118		*
119		* @param value
120		* allowed object is {@link String }
121		*
122		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
123	0	public void setMappingType(String value)...
124		{
125	0	this.mappingType = value;
126		}
127
128		}