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Coverage Report

  1. Project Clover database Thu Nov 7 2024 17:01:39 GMT
  2. Package jalview.xml.binding.uniprot

File Entry.java

 

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../../../../img/srcFileCovDistChart0.png
0% of files have more coverage

Code metrics

22
49
27
1
659
207
38
0.78
1.81
27
1.41

Classes

Class Line # Actions
Entry 76 49 38
0.00%
 

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1    //
2    // This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802
3    // See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a>
4    // Any modifications to this file will be lost upon recompilation of the source schema.
5    // Generated on: 2023.05.13 at 06:58:42 PM BST
6    //
7   
8    package jalview.xml.binding.uniprot;
9   
10    import java.util.ArrayList;
11    import java.util.List;
12    import javax.xml.bind.annotation.XmlAccessType;
13    import javax.xml.bind.annotation.XmlAccessorType;
14    import javax.xml.bind.annotation.XmlAttribute;
15    import javax.xml.bind.annotation.XmlElement;
16    import javax.xml.bind.annotation.XmlRootElement;
17    import javax.xml.bind.annotation.XmlSchemaType;
18    import javax.xml.bind.annotation.XmlType;
19    import javax.xml.datatype.XMLGregorianCalendar;
20   
21    /**
22    * <p>
23    * Java class for anonymous complex type.
24    *
25    * <p>
26    * The following schema fragment specifies the expected content contained within
27    * this class.
28    *
29    * <pre>
30    * &lt;complexType>
31    * &lt;complexContent>
32    * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
33    * &lt;sequence>
34    * &lt;element name="accession" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded"/>
35    * &lt;element name="name" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded"/>
36    * &lt;element name="protein" type="{http://uniprot.org/uniprot}proteinType"/>
37    * &lt;element name="gene" type="{http://uniprot.org/uniprot}geneType" maxOccurs="unbounded" minOccurs="0"/>
38    * &lt;element name="organism" type="{http://uniprot.org/uniprot}organismType"/>
39    * &lt;element name="organismHost" type="{http://uniprot.org/uniprot}organismType" maxOccurs="unbounded" minOccurs="0"/>
40    * &lt;element name="geneLocation" type="{http://uniprot.org/uniprot}geneLocationType" maxOccurs="unbounded" minOccurs="0"/>
41    * &lt;element name="reference" type="{http://uniprot.org/uniprot}referenceType" maxOccurs="unbounded"/>
42    * &lt;element name="comment" type="{http://uniprot.org/uniprot}commentType" maxOccurs="unbounded" minOccurs="0"/>
43    * &lt;element name="dbReference" type="{http://uniprot.org/uniprot}dbReferenceType" maxOccurs="unbounded" minOccurs="0"/>
44    * &lt;element name="proteinExistence" type="{http://uniprot.org/uniprot}proteinExistenceType"/>
45    * &lt;element name="keyword" type="{http://uniprot.org/uniprot}keywordType" maxOccurs="unbounded" minOccurs="0"/>
46    * &lt;element name="feature" type="{http://uniprot.org/uniprot}featureType" maxOccurs="unbounded" minOccurs="0"/>
47    * &lt;element name="evidence" type="{http://uniprot.org/uniprot}evidenceType" maxOccurs="unbounded" minOccurs="0"/>
48    * &lt;element name="sequence" type="{http://uniprot.org/uniprot}sequenceType"/>
49    * &lt;/sequence>
50    * &lt;attribute name="dataset" use="required">
51    * &lt;simpleType>
52    * &lt;restriction base="{http://www.w3.org/2001/XMLSchema}string">
53    * &lt;enumeration value="Swiss-Prot"/>
54    * &lt;enumeration value="TrEMBL"/>
55    * &lt;/restriction>
56    * &lt;/simpleType>
57    * &lt;/attribute>
58    * &lt;attribute name="created" use="required" type="{http://www.w3.org/2001/XMLSchema}date" />
59    * &lt;attribute name="modified" use="required" type="{http://www.w3.org/2001/XMLSchema}date" />
60    * &lt;attribute name="version" use="required" type="{http://www.w3.org/2001/XMLSchema}int" />
61    * &lt;/restriction>
62    * &lt;/complexContent>
63    * &lt;/complexType>
64    * </pre>
65    *
66    *
67    */
68    @XmlAccessorType(XmlAccessType.FIELD)
69    @XmlType(
70    name = "",
71    propOrder =
72    { "accession", "name", "protein", "gene", "organism", "organismHost",
73    "geneLocation", "reference", "comment", "dbReference",
74    "proteinExistence", "keyword", "feature", "evidence", "sequence" })
75    @XmlRootElement(name = "entry")
 
76    public class Entry
77    {
78   
79    @XmlElement(required = true)
80    protected List<String> accession;
81   
82    @XmlElement(required = true)
83    protected List<String> name;
84   
85    @XmlElement(required = true)
86    protected ProteinType protein;
87   
88    protected List<GeneType> gene;
89   
90    @XmlElement(required = true)
91    protected OrganismType organism;
92   
93    protected List<OrganismType> organismHost;
94   
95    protected List<GeneLocationType> geneLocation;
96   
97    @XmlElement(required = true)
98    protected List<ReferenceType> reference;
99   
100    @XmlElement(nillable = true)
101    protected List<CommentType> comment;
102   
103    protected List<DbReferenceType> dbReference;
104   
105    @XmlElement(required = true)
106    protected ProteinExistenceType proteinExistence;
107   
108    protected List<KeywordType> keyword;
109   
110    protected List<FeatureType> feature;
111   
112    protected List<EvidenceType> evidence;
113   
114    @XmlElement(required = true)
115    protected SequenceType sequence;
116   
117    @XmlAttribute(name = "dataset", required = true)
118    protected String dataset;
119   
120    @XmlAttribute(name = "created", required = true)
121    @XmlSchemaType(name = "date")
122    protected XMLGregorianCalendar created;
123   
124    @XmlAttribute(name = "modified", required = true)
125    @XmlSchemaType(name = "date")
126    protected XMLGregorianCalendar modified;
127   
128    @XmlAttribute(name = "version", required = true)
129    protected int version;
130   
131    /**
132    * Gets the value of the accession property.
133    *
134    * <p>
135    * This accessor method returns a reference to the live list, not a snapshot.
136    * Therefore any modification you make to the returned list will be present
137    * inside the JAXB object. This is why there is not a <CODE>set</CODE> method
138    * for the accession property.
139    *
140    * <p>
141    * For example, to add a new item, do as follows:
142    *
143    * <pre>
144    * getAccession().add(newItem);
145    * </pre>
146    *
147    *
148    * <p>
149    * Objects of the following type(s) are allowed in the list {@link String }
150    *
151    *
152    */
 
153  0 toggle public List<String> getAccession()
154    {
155  0 if (accession == null)
156    {
157  0 accession = new ArrayList<String>();
158    }
159  0 return this.accession;
160    }
161   
162    /**
163    * Gets the value of the name property.
164    *
165    * <p>
166    * This accessor method returns a reference to the live list, not a snapshot.
167    * Therefore any modification you make to the returned list will be present
168    * inside the JAXB object. This is why there is not a <CODE>set</CODE> method
169    * for the name property.
170    *
171    * <p>
172    * For example, to add a new item, do as follows:
173    *
174    * <pre>
175    * getName().add(newItem);
176    * </pre>
177    *
178    *
179    * <p>
180    * Objects of the following type(s) are allowed in the list {@link String }
181    *
182    *
183    */
 
184  0 toggle public List<String> getName()
185    {
186  0 if (name == null)
187    {
188  0 name = new ArrayList<String>();
189    }
190  0 return this.name;
191    }
192   
193    /**
194    * Gets the value of the protein property.
195    *
196    * @return possible object is {@link ProteinType }
197    *
198    */
 
199  0 toggle public ProteinType getProtein()
200    {
201  0 return protein;
202    }
203   
204    /**
205    * Sets the value of the protein property.
206    *
207    * @param value
208    * allowed object is {@link ProteinType }
209    *
210    */
 
211  0 toggle public void setProtein(ProteinType value)
212    {
213  0 this.protein = value;
214    }
215   
216    /**
217    * Gets the value of the gene property.
218    *
219    * <p>
220    * This accessor method returns a reference to the live list, not a snapshot.
221    * Therefore any modification you make to the returned list will be present
222    * inside the JAXB object. This is why there is not a <CODE>set</CODE> method
223    * for the gene property.
224    *
225    * <p>
226    * For example, to add a new item, do as follows:
227    *
228    * <pre>
229    * getGene().add(newItem);
230    * </pre>
231    *
232    *
233    * <p>
234    * Objects of the following type(s) are allowed in the list {@link GeneType }
235    *
236    *
237    */
 
238  0 toggle public List<GeneType> getGene()
239    {
240  0 if (gene == null)
241    {
242  0 gene = new ArrayList<GeneType>();
243    }
244  0 return this.gene;
245    }
246   
247    /**
248    * Gets the value of the organism property.
249    *
250    * @return possible object is {@link OrganismType }
251    *
252    */
 
253  0 toggle public OrganismType getOrganism()
254    {
255  0 return organism;
256    }
257   
258    /**
259    * Sets the value of the organism property.
260    *
261    * @param value
262    * allowed object is {@link OrganismType }
263    *
264    */
 
265  0 toggle public void setOrganism(OrganismType value)
266    {
267  0 this.organism = value;
268    }
269   
270    /**
271    * Gets the value of the organismHost property.
272    *
273    * <p>
274    * This accessor method returns a reference to the live list, not a snapshot.
275    * Therefore any modification you make to the returned list will be present
276    * inside the JAXB object. This is why there is not a <CODE>set</CODE> method
277    * for the organismHost property.
278    *
279    * <p>
280    * For example, to add a new item, do as follows:
281    *
282    * <pre>
283    * getOrganismHost().add(newItem);
284    * </pre>
285    *
286    *
287    * <p>
288    * Objects of the following type(s) are allowed in the list
289    * {@link OrganismType }
290    *
291    *
292    */
 
293  0 toggle public List<OrganismType> getOrganismHost()
294    {
295  0 if (organismHost == null)
296    {
297  0 organismHost = new ArrayList<OrganismType>();
298    }
299  0 return this.organismHost;
300    }
301   
302    /**
303    * Gets the value of the geneLocation property.
304    *
305    * <p>
306    * This accessor method returns a reference to the live list, not a snapshot.
307    * Therefore any modification you make to the returned list will be present
308    * inside the JAXB object. This is why there is not a <CODE>set</CODE> method
309    * for the geneLocation property.
310    *
311    * <p>
312    * For example, to add a new item, do as follows:
313    *
314    * <pre>
315    * getGeneLocation().add(newItem);
316    * </pre>
317    *
318    *
319    * <p>
320    * Objects of the following type(s) are allowed in the list
321    * {@link GeneLocationType }
322    *
323    *
324    */
 
325  0 toggle public List<GeneLocationType> getGeneLocation()
326    {
327  0 if (geneLocation == null)
328    {
329  0 geneLocation = new ArrayList<GeneLocationType>();
330    }
331  0 return this.geneLocation;
332    }
333   
334    /**
335    * Gets the value of the reference property.
336    *
337    * <p>
338    * This accessor method returns a reference to the live list, not a snapshot.
339    * Therefore any modification you make to the returned list will be present
340    * inside the JAXB object. This is why there is not a <CODE>set</CODE> method
341    * for the reference property.
342    *
343    * <p>
344    * For example, to add a new item, do as follows:
345    *
346    * <pre>
347    * getReference().add(newItem);
348    * </pre>
349    *
350    *
351    * <p>
352    * Objects of the following type(s) are allowed in the list
353    * {@link ReferenceType }
354    *
355    *
356    */
 
357  0 toggle public List<ReferenceType> getReference()
358    {
359  0 if (reference == null)
360    {
361  0 reference = new ArrayList<ReferenceType>();
362    }
363  0 return this.reference;
364    }
365   
366    /**
367    * Gets the value of the comment property.
368    *
369    * <p>
370    * This accessor method returns a reference to the live list, not a snapshot.
371    * Therefore any modification you make to the returned list will be present
372    * inside the JAXB object. This is why there is not a <CODE>set</CODE> method
373    * for the comment property.
374    *
375    * <p>
376    * For example, to add a new item, do as follows:
377    *
378    * <pre>
379    * getComment().add(newItem);
380    * </pre>
381    *
382    *
383    * <p>
384    * Objects of the following type(s) are allowed in the list {@link CommentType
385    * }
386    *
387    *
388    */
 
389  0 toggle public List<CommentType> getComment()
390    {
391  0 if (comment == null)
392    {
393  0 comment = new ArrayList<CommentType>();
394    }
395  0 return this.comment;
396    }
397   
398    /**
399    * Gets the value of the dbReference property.
400    *
401    * <p>
402    * This accessor method returns a reference to the live list, not a snapshot.
403    * Therefore any modification you make to the returned list will be present
404    * inside the JAXB object. This is why there is not a <CODE>set</CODE> method
405    * for the dbReference property.
406    *
407    * <p>
408    * For example, to add a new item, do as follows:
409    *
410    * <pre>
411    * getDbReference().add(newItem);
412    * </pre>
413    *
414    *
415    * <p>
416    * Objects of the following type(s) are allowed in the list
417    * {@link DbReferenceType }
418    *
419    *
420    */
 
421  0 toggle public List<DbReferenceType> getDbReference()
422    {
423  0 if (dbReference == null)
424    {
425  0 dbReference = new ArrayList<DbReferenceType>();
426    }
427  0 return this.dbReference;
428    }
429   
430    /**
431    * Gets the value of the proteinExistence property.
432    *
433    * @return possible object is {@link ProteinExistenceType }
434    *
435    */
 
436  0 toggle public ProteinExistenceType getProteinExistence()
437    {
438  0 return proteinExistence;
439    }
440   
441    /**
442    * Sets the value of the proteinExistence property.
443    *
444    * @param value
445    * allowed object is {@link ProteinExistenceType }
446    *
447    */
 
448  0 toggle public void setProteinExistence(ProteinExistenceType value)
449    {
450  0 this.proteinExistence = value;
451    }
452   
453    /**
454    * Gets the value of the keyword property.
455    *
456    * <p>
457    * This accessor method returns a reference to the live list, not a snapshot.
458    * Therefore any modification you make to the returned list will be present
459    * inside the JAXB object. This is why there is not a <CODE>set</CODE> method
460    * for the keyword property.
461    *
462    * <p>
463    * For example, to add a new item, do as follows:
464    *
465    * <pre>
466    * getKeyword().add(newItem);
467    * </pre>
468    *
469    *
470    * <p>
471    * Objects of the following type(s) are allowed in the list {@link KeywordType
472    * }
473    *
474    *
475    */
 
476  0 toggle public List<KeywordType> getKeyword()
477    {
478  0 if (keyword == null)
479    {
480  0 keyword = new ArrayList<KeywordType>();
481    }
482  0 return this.keyword;
483    }
484   
485    /**
486    * Gets the value of the feature property.
487    *
488    * <p>
489    * This accessor method returns a reference to the live list, not a snapshot.
490    * Therefore any modification you make to the returned list will be present
491    * inside the JAXB object. This is why there is not a <CODE>set</CODE> method
492    * for the feature property.
493    *
494    * <p>
495    * For example, to add a new item, do as follows:
496    *
497    * <pre>
498    * getFeature().add(newItem);
499    * </pre>
500    *
501    *
502    * <p>
503    * Objects of the following type(s) are allowed in the list {@link FeatureType
504    * }
505    *
506    *
507    */
 
508  0 toggle public List<FeatureType> getFeature()
509    {
510  0 if (feature == null)
511    {
512  0 feature = new ArrayList<FeatureType>();
513    }
514  0 return this.feature;
515    }
516   
517    /**
518    * Gets the value of the evidence property.
519    *
520    * <p>
521    * This accessor method returns a reference to the live list, not a snapshot.
522    * Therefore any modification you make to the returned list will be present
523    * inside the JAXB object. This is why there is not a <CODE>set</CODE> method
524    * for the evidence property.
525    *
526    * <p>
527    * For example, to add a new item, do as follows:
528    *
529    * <pre>
530    * getEvidence().add(newItem);
531    * </pre>
532    *
533    *
534    * <p>
535    * Objects of the following type(s) are allowed in the list
536    * {@link EvidenceType }
537    *
538    *
539    */
 
540  0 toggle public List<EvidenceType> getEvidence()
541    {
542  0 if (evidence == null)
543    {
544  0 evidence = new ArrayList<EvidenceType>();
545    }
546  0 return this.evidence;
547    }
548   
549    /**
550    * Gets the value of the sequence property.
551    *
552    * @return possible object is {@link SequenceType }
553    *
554    */
 
555  0 toggle public SequenceType getSequence()
556    {
557  0 return sequence;
558    }
559   
560    /**
561    * Sets the value of the sequence property.
562    *
563    * @param value
564    * allowed object is {@link SequenceType }
565    *
566    */
 
567  0 toggle public void setSequence(SequenceType value)
568    {
569  0 this.sequence = value;
570    }
571   
572    /**
573    * Gets the value of the dataset property.
574    *
575    * @return possible object is {@link String }
576    *
577    */
 
578  0 toggle public String getDataset()
579    {
580  0 return dataset;
581    }
582   
583    /**
584    * Sets the value of the dataset property.
585    *
586    * @param value
587    * allowed object is {@link String }
588    *
589    */
 
590  0 toggle public void setDataset(String value)
591    {
592  0 this.dataset = value;
593    }
594   
595    /**
596    * Gets the value of the created property.
597    *
598    * @return possible object is {@link XMLGregorianCalendar }
599    *
600    */
 
601  0 toggle public XMLGregorianCalendar getCreated()
602    {
603  0 return created;
604    }
605   
606    /**
607    * Sets the value of the created property.
608    *
609    * @param value
610    * allowed object is {@link XMLGregorianCalendar }
611    *
612    */
 
613  0 toggle public void setCreated(XMLGregorianCalendar value)
614    {
615  0 this.created = value;
616    }
617   
618    /**
619    * Gets the value of the modified property.
620    *
621    * @return possible object is {@link XMLGregorianCalendar }
622    *
623    */
 
624  0 toggle public XMLGregorianCalendar getModified()
625    {
626  0 return modified;
627    }
628   
629    /**
630    * Sets the value of the modified property.
631    *
632    * @param value
633    * allowed object is {@link XMLGregorianCalendar }
634    *
635    */
 
636  0 toggle public void setModified(XMLGregorianCalendar value)
637    {
638  0 this.modified = value;
639    }
640   
641    /**
642    * Gets the value of the version property.
643    *
644    */
 
645  0 toggle public int getVersion()
646    {
647  0 return version;
648    }
649   
650    /**
651    * Sets the value of the version property.
652    *
653    */
 
654  0 toggle public void setVersion(int value)
655    {
656  0 this.version = value;
657    }
658   
659    }
  • Report generated by OpenClover v 4.4.1 on Thu Nov 7 2024 17:02:19 GMT using coverage data from Thu Jan 1 1970 01:00:00 GMT.
  • OpenClover is free and open-source software.