Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
UrlLinkDisplay	37	59	30	0.00%	Show methods

Class UrlLinkDisplay

Class UrlLinkDisplay	Line # 37	Total Statements 59	Complexity 30	TOTAL Coverage 0.00%
<init>, line 56()   <init>, line 56()	5656	6.06	1.01	0.0 0.00%
UrlLinkDisplay(String,UrlLink,boolean,boolean)   UrlLinkDisplay(String,UrlLink,boolean,boolean)	7575	4.04	1.01	0.0 0.00%
getId() : String   getId() : String	8686	1.01	1.01	0.0 0.00%
getDescription() : String   getDescription() : String	9191	1.01	1.01	0.0 0.00%
getDBName() : String   getDBName() : String	9696	1.01	1.01	0.0 0.00%
getUrl() : String   getUrl() : String	101101	1.01	1.01	0.0 0.00%
getIsPrimary() : boolean   getIsPrimary() : boolean	106106	1.01	1.01	0.0 0.00%
getIsSelected() : boolean   getIsSelected() : boolean	111111	1.01	1.01	0.0 0.00%
setDBName(String) : void   setDBName(String) : void	116116	1.01	1.01	0.0 0.00%
setUrl(String) : void   setUrl(String) : void	121121	1.01	1.01	0.0 0.00%
setDescription(String) : void   setDescription(String) : void	126126	1.01	1.01	0.0 0.00%
setIsDefault(boolean) : void   setIsDefault(boolean) : void	131131	1.01	1.01	0.0 0.00%
setIsSelected(boolean) : void   setIsSelected(boolean) : void	136136	1.01	1.01	0.0 0.00%
getValue(int) : Object   getValue(int) : Object	141141	15.015	7.07	0.0 0.00%
setValue(int,Object) : void   setValue(int,Object) : void	162162	19.019	7.07	0.0 0.00%
isEditable(int) : boolean   isEditable(int) : boolean	196196	3.03	2.02	0.0 0.00%
getDisplayColumnNames() : List<String>   getDisplayColumnNames() : List<String>	215215	1.01	1.01	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21
22		package jalview.urls;
23
24		import jalview.util.MessageManager;
25		import jalview.util.UrlLink;
26
27		import java.util.ArrayList;
28		import java.util.List;
29
30		/**
31		* UrlLink table row definition
32		*
33		* @author $author$
34		* @version $Revision$
35		*/
36
		0% Uncovered Elements: 78 (78) Complexity: 30 Complexity Density: 0.51
37		public class UrlLinkDisplay
38		{
39		// column positions
40		public static final int DATABASE = 0;
41
42		public static final int NAME = 1;
43
44		public static final int URL = 2;
45
46		public static final int SELECTED = 3;
47
48		public static final int PRIMARY = 4;
49
50		public static final int ID = 5;
51
52		// Headers for columns in table
53		@SuppressWarnings("serial")
54		private static final List<String> COLNAMES = new ArrayList<String>()
55		{
		0% Uncovered Elements: 6 (6) Complexity: 1 Complexity Density: 0.17
56	0	{...
57	0	add(MessageManager.formatMessage("label.database"));
58	0	add(MessageManager.formatMessage("label.name"));
59	0	add(MessageManager.formatMessage("label.url"));
60	0	add(MessageManager.formatMessage("label.inmenu"));
61	0	add(MessageManager.formatMessage("label.primary"));
62	0	add(MessageManager.formatMessage("label.id"));
63		}
64		};
65
66		private String id; // id is not supplied to display, but used to identify
67		// entries when saved
68
69		private boolean isPrimary;
70
71		private boolean isSelected;
72
73		private UrlLink link;
74
		0% Uncovered Elements: 4 (4) Complexity: 1 Complexity Density: 0.25
75	0	public UrlLinkDisplay(String rowId, UrlLink rowLink, boolean rowSelected,...
76		boolean rowDefault)
77		{
78	0	id = rowId;
79	0	isPrimary = rowDefault;
80	0	isSelected = rowSelected;
81
82	0	link = rowLink;
83		}
84
85		// getters/setters
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
86	0	public String getId()...
87		{
88	0	return id;
89		}
90
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
91	0	public String getDescription()...
92		{
93	0	return link.getLabel();
94		}
95
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
96	0	public String getDBName()...
97		{
98	0	return link.getTarget();
99		}
100
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
101	0	public String getUrl()...
102		{
103	0	return link.getUrlWithToken();
104		}
105
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
106	0	public boolean getIsPrimary()...
107		{
108	0	return isPrimary;
109		}
110
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
111	0	public boolean getIsSelected()...
112		{
113	0	return isSelected;
114		}
115
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
116	0	public void setDBName(String name)...
117		{
118	0	link.setTarget(name);
119		}
120
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
121	0	public void setUrl(String rowUrl)...
122		{
123	0	link = new UrlLink(getDescription(), rowUrl, getDBName());
124		}
125
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
126	0	public void setDescription(String desc)...
127		{
128	0	link.setLabel(desc);
129		}
130
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
131	0	public void setIsDefault(boolean rowDefault)...
132		{
133	0	isPrimary = rowDefault;
134		}
135
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
136	0	public void setIsSelected(boolean rowSelected)...
137		{
138	0	isSelected = rowSelected;
139		}
140
		0% Uncovered Elements: 15 (15) Complexity: 7 Complexity Density: 0.47
141	0	public Object getValue(int index)...
142		{
143	0	switch (index)
144		{
145	0	case ID:
146	0	return id;
147	0	case URL:
148	0	return getUrl();
149	0	case PRIMARY:
150	0	return isPrimary;
151	0	case SELECTED:
152	0	return isSelected;
153	0	case NAME:
154	0	return getDescription();
155	0	case DATABASE:
156	0	return getDBName();
157	0	default:
158	0	return null;
159		}
160		}
161
		0% Uncovered Elements: 19 (19) Complexity: 7 Complexity Density: 0.37
162	0	public void setValue(int index, Object value)...
163		{
164	0	switch (index)
165		{
166	0	case ID:
167	0	id = (String) value;
168	0	break;
169	0	case URL:
170	0	setUrl((String) value);
171	0	break;
172	0	case PRIMARY:
173	0	isPrimary = (boolean) value;
174	0	break;
175	0	case SELECTED:
176	0	isSelected = (boolean) value;
177	0	break;
178	0	case NAME:
179	0	setDescription((String) value);
180		// deliberate fall through
181	0	case DATABASE:
182	0	setDBName((String) value);
183	0	break;
184	0	default:
185		// do nothing
186		}
187		}
188
189		/**
190		* Identify editable columns
191		*
192		* @param index
193		* index of column
194		* @return whether column can be edited in table
195		*/
		0% Uncovered Elements: 5 (5) Complexity: 2 Complexity Density: 0.67
196	0	public boolean isEditable(int index)...
197		{
198	0	if (index == PRIMARY)
199		{
200		// primary link must not be a $DB_ACCESSION$ link
201		// so only allow editing if it is not
202	0	return (!link.usesDBAccession());
203		}
204		else
205		{
206	0	return index == SELECTED;
207		}
208		}
209
210		/**
211		* Get list of column names to display in UI
212		*
213		* @return column names
214		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
215	0	public static List<String> getDisplayColumnNames()...
216		{
217		// Display names between DESCRIPTION and ID (excludes ID)
218	0	return COLNAMES.subList(DATABASE, ID);
219		}
220		}