Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
HydrophobicColourSchemeTest	29	8	1	0.00%	Show methods

Class HydrophobicColourSchemeTest

Class HydrophobicColourSchemeTest	Line # 29	Total Statements 8	Complexity 1	TOTAL Coverage 0.00%
testFindColour() : void   testFindColour() : void	3737	8.08	1.01	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.schemes;
22
23		import static org.testng.Assert.assertEquals;
24
25		import java.awt.Color;
26
27		import org.testng.annotations.Test;
28
		0% Uncovered Elements: 9 (9) Complexity: 1 Complexity Density: 0.12
29		public class HydrophobicColourSchemeTest
30		{
31		/**
32		* Turn colours are based on the scores in ResidueProperties.hyd A = 1.8, R =
33		* -4.5, N = -3.5, D = -3.5... min = -3.9 max = 4.5
34		* <p>
35		* scores are scaled to c 0-1 between min and max and colour is (c, 0, 1-c)
36		*/
		0% Uncovered Elements: 8 (8) Complexity: 1 Complexity Density: 0.12 4-
37	0	@Test(groups = "Functional")...
38		public void testFindColour()
39		{
40	0	ScoreColourScheme scheme = new HydrophobicColourScheme();
41
42	0	float min = -3.9f;
43	0	float max = 4.5f;
44	0	float a = (1.8f - min) / (max - min);
45	0	assertEquals(scheme.findColour('A', 0, null), new Color(a, 0, 1 - a));
46
47	0	float d = (-3.5f - min) / (max - min);
48	0	assertEquals(scheme.findColour('D', 0, null), new Color(d, 0, 1 - d));
49
50	0	assertEquals(scheme.findColour('-', 0, null), Color.WHITE);
51		}
52
53		}