Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
GStructureViewer	42	71	21	0.00%	Show methods

Class GStructureViewer

Class GStructureViewer	Line # 42	Total Statements 71	Complexity 21	TOTAL Coverage 0.00%
GStructureViewer()   GStructureViewer()	8080	3.03	2.02	0.0 0.00%
actionPerformed(ActionEvent) : void   actionPerformed(ActionEvent) : void	111111	1.01	1.01	0.0 0.00%
actionPerformed(ActionEvent) : void   actionPerformed(ActionEvent) : void	122122	1.01	1.01	0.0 0.00%
actionPerformed(ActionEvent) : void   actionPerformed(ActionEvent) : void	133133	1.01	1.01	0.0 0.00%
actionPerformed(ActionEvent) : void   actionPerformed(ActionEvent) : void	144144	1.01	1.01	0.0 0.00%
actionPerformed(ActionEvent) : void   actionPerformed(ActionEvent) : void	164164	1.01	1.01	0.0 0.00%
actionPerformed(ActionEvent) : void   actionPerformed(ActionEvent) : void	176176	1.01	1.01	0.0 0.00%
actionPerformed(ActionEvent) : void   actionPerformed(ActionEvent) : void	187187	1.01	1.01	0.0 0.00%
jbInit() : void   jbInit() : void	9191	60.060	1.01	0.0 0.00%
fitToWindow_actionPerformed() : void   fitToWindow_actionPerformed() : void	221221	1.01	1.01	0.0 0.00%
highlightSelection_actionPerformed() : void   highlightSelection_actionPerformed() : void	226226	0.00	1.01	-1.0 -1.0 -
viewerColour_actionPerformed() : void   viewerColour_actionPerformed() : void	230230	0.00	1.01	-1.0 -1.0 -
pdbFile_actionPerformed() : void   pdbFile_actionPerformed() : void	236236	0.00	1.01	-1.0 -1.0 -
makePDBImage(TYPE) : void   makePDBImage(TYPE) : void	241241	0.00	1.01	-1.0 -1.0 -
viewMapping_actionPerformed() : void   viewMapping_actionPerformed() : void	246246	0.00	1.01	-1.0 -1.0 -
seqColour_actionPerformed() : void   seqColour_actionPerformed() : void	251251	0.00	1.01	-1.0 -1.0 -
chainColour_actionPerformed() : void   chainColour_actionPerformed() : void	256256	0.00	1.01	-1.0 -1.0 -
chargeColour_actionPerformed() : void   chargeColour_actionPerformed() : void	261261	0.00	1.01	-1.0 -1.0 -
background_actionPerformed() : void   background_actionPerformed() : void	266266	0.00	1.01	-1.0 -1.0 -
showHelp_actionPerformed() : void   showHelp_actionPerformed() : void	271271	0.00	1.01	-1.0 -1.0 -

 

Contributing tests

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.jbgui;
22
23		import java.awt.BorderLayout;
24		import java.awt.GridLayout;
25		import java.awt.event.ActionEvent;
26		import java.awt.event.ActionListener;
27
28		import javax.swing.JInternalFrame;
29		import javax.swing.JLabel;
30		import javax.swing.JMenu;
31		import javax.swing.JMenuBar;
32		import javax.swing.JMenuItem;
33		import javax.swing.JPanel;
34		import javax.swing.JRadioButtonMenuItem;
35
36		import jalview.api.structures.JalviewStructureDisplayI;
37		import jalview.gui.ColourMenuHelper.ColourChangeListener;
38		import jalview.util.ImageMaker.TYPE;
39		import jalview.util.MessageManager;
40
41		@SuppressWarnings("serial")
		0% Uncovered Elements: 91 (91) Complexity: 21 Complexity Density: 0.3
42		public abstract class GStructureViewer extends JInternalFrame
43		implements JalviewStructureDisplayI, ColourChangeListener
44		{
45		// private AAStructureBindingModel bindingModel;
46
47		protected JMenu savemenu;
48
49		protected JMenu viewMenu;
50
51		protected JMenu colourMenu;
52
53		protected JMenu chainMenu;
54
55		protected JMenu hetatmMenu;
56
57		protected JMenu viewerActionMenu;
58
59		protected JMenuItem alignStructs;
60
61		protected JMenuItem fitToWindow;
62
63		protected JRadioButtonMenuItem seqColour;
64
65		protected JRadioButtonMenuItem chainColour;
66
67		protected JRadioButtonMenuItem chargeColour;
68
69		protected JRadioButtonMenuItem viewerColour;
70
71		protected JMenuItem helpItem;
72
73		protected JLabel statusBar;
74
75		protected JPanel statusPanel;
76
77		/**
78		* Constructor
79		*/
		0% Uncovered Elements: 3 (3) Complexity: 2 Complexity Density: 0.67
80	0	public GStructureViewer()...
81		{
82	0	try
83		{
84	0	jbInit();
85		} catch (Exception ex)
86		{
87	0	ex.printStackTrace();
88		}
89		}
90
		0% Uncovered Elements: 60 (60) Complexity: 1 Complexity Density: 0.02
91	0	private void jbInit() throws Exception...
92		{
93	0	setFrameIcon(null);
94	0	setName("jalview-structureviewer");
95
96	0	JMenuBar menuBar = new JMenuBar();
97	0	this.setJMenuBar(menuBar);
98
99	0	JMenu fileMenu = new JMenu();
100	0	fileMenu.setText(MessageManager.getString("action.file"));
101
102	0	savemenu = new JMenu();
103	0	savemenu.setActionCommand(
104		MessageManager.getString("action.save_image"));
105	0	savemenu.setText(MessageManager.getString("action.save_as"));
106
107	0	JMenuItem pdbFile = new JMenuItem();
108	0	pdbFile.setText(MessageManager.getString("label.pdb_file"));
109	0	pdbFile.addActionListener(new ActionListener()
110		{
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
111	0	@Override...
112		public void actionPerformed(ActionEvent actionEvent)
113		{
114	0	pdbFile_actionPerformed();
115		}
116		});
117
118	0	JMenuItem png = new JMenuItem();
119	0	png.setText("PNG");
120	0	png.addActionListener(new ActionListener()
121		{
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
122	0	@Override...
123		public void actionPerformed(ActionEvent actionEvent)
124		{
125	0	makePDBImage(TYPE.PNG);
126		}
127		});
128
129	0	JMenuItem eps = new JMenuItem();
130	0	eps.setText("EPS");
131	0	eps.addActionListener(new ActionListener()
132		{
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
133	0	@Override...
134		public void actionPerformed(ActionEvent actionEvent)
135		{
136	0	makePDBImage(TYPE.EPS);
137		}
138		});
139
140	0	JMenuItem viewMapping = new JMenuItem();
141	0	viewMapping.setText(MessageManager.getString("label.view_mapping"));
142	0	viewMapping.addActionListener(new ActionListener()
143		{
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
144	0	@Override...
145		public void actionPerformed(ActionEvent actionEvent)
146		{
147	0	viewMapping_actionPerformed();
148		}
149		});
150
151	0	viewMenu = new JMenu();
152	0	viewMenu.setText(MessageManager.getString("action.view"));
153
154	0	chainMenu = new JMenu();
155	0	chainMenu.setText(MessageManager.getString("action.show_chain"));
156
157	0	hetatmMenu = new JMenu();
158	0	hetatmMenu.setText(MessageManager.getString("action.show_hetatm"));
159
160	0	fitToWindow = new JMenuItem();
161	0	fitToWindow.setText(MessageManager.getString("label.fit_to_window"));
162	0	fitToWindow.addActionListener(new ActionListener()
163		{
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
164	0	@Override...
165		public void actionPerformed(ActionEvent actionEvent)
166		{
167	0	fitToWindow_actionPerformed();
168		}
169		});
170
171	0	JMenu helpMenu = new JMenu();
172	0	helpMenu.setText(MessageManager.getString("action.help"));
173	0	helpItem = new JMenuItem();
174	0	helpItem.addActionListener(new ActionListener()
175		{
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
176	0	@Override...
177		public void actionPerformed(ActionEvent actionEvent)
178		{
179	0	showHelp_actionPerformed();
180		}
181		});
182	0	alignStructs = new JMenuItem();
183	0	alignStructs.setText(
184		MessageManager.getString("label.superpose_structures"));
185	0	alignStructs.addActionListener(new ActionListener()
186		{
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
187	0	@Override...
188		public void actionPerformed(ActionEvent actionEvent)
189		{
190	0	alignStructsWithAllAlignPanels();
191		}
192		});
193
194	0	viewerActionMenu = new JMenu(); // text set in sub-classes
195	0	viewerActionMenu.setVisible(false);
196	0	viewerActionMenu.add(alignStructs);
197	0	colourMenu = new JMenu();
198	0	colourMenu.setText(MessageManager.getString("label.colours"));
199	0	fileMenu.add(savemenu);
200	0	fileMenu.add(viewMapping);
201	0	savemenu.add(pdbFile);
202	0	savemenu.add(png);
203	0	savemenu.add(eps);
204	0	viewMenu.add(chainMenu);
205	0	viewMenu.add(hetatmMenu);
206	0	helpMenu.add(helpItem);
207
208	0	menuBar.add(fileMenu);
209	0	menuBar.add(viewMenu);
210	0	menuBar.add(colourMenu);
211	0	menuBar.add(viewerActionMenu);
212	0	menuBar.add(helpMenu);
213
214	0	statusPanel = new JPanel();
215	0	statusPanel.setLayout(new GridLayout());
216	0	this.getContentPane().add(statusPanel, BorderLayout.SOUTH);
217	0	statusBar = new JLabel();
218	0	statusPanel.add(statusBar, null);
219		}
220
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
221	0	protected void fitToWindow_actionPerformed()...
222		{
223	0	getBinding().focusView();
224		}
225
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
226	0	protected void highlightSelection_actionPerformed()...
227		{
228		}
229
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
230	0	protected void viewerColour_actionPerformed()...
231		{
232		}
233
234		protected abstract String alignStructsWithAllAlignPanels();
235
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
236	0	public void pdbFile_actionPerformed()...
237		{
238
239		}
240
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
241	0	public void makePDBImage(TYPE imageType)...
242		{
243
244		}
245
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
246	0	public void viewMapping_actionPerformed()...
247		{
248
249		}
250
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
251	0	public void seqColour_actionPerformed()...
252		{
253
254		}
255
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
256	0	public void chainColour_actionPerformed()...
257		{
258
259		}
260
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
261	0	public void chargeColour_actionPerformed()...
262		{
263
264		}
265
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
266	0	public void background_actionPerformed()...
267		{
268
269		}
270
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
271	0	public void showHelp_actionPerformed()...
272		{
273
274		}
275		}