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Coverage Report

  1. Project Clover database Thu Nov 7 2024 17:01:39 GMT
  2. Package jalview.jbgui

File GPCAPanel.java

 

Coverage histogram

../../img/srcFileCovDistChart0.png
0% of files have more coverage

Code metrics

2
112
32
1
359
299
34
0.3
3.5
32
1.06

Classes

Class Line # Actions
GPCAPanel 46 112 34
0.00%
 

Contributing tests

No tests hitting this source file were found.

Source view

1    /*
2    * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3    * Copyright (C) $$Year-Rel$$ The Jalview Authors
4    *
5    * This file is part of Jalview.
6    *
7    * Jalview is free software: you can redistribute it and/or
8    * modify it under the terms of the GNU General Public License
9    * as published by the Free Software Foundation, either version 3
10    * of the License, or (at your option) any later version.
11    *
12    * Jalview is distributed in the hope that it will be useful, but
13    * WITHOUT ANY WARRANTY; without even the implied warranty
14    * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15    * PURPOSE. See the GNU General Public License for more details.
16    *
17    * You should have received a copy of the GNU General Public License
18    * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19    * The Jalview Authors are detailed in the 'AUTHORS' file.
20    */
21    package jalview.jbgui;
22   
23    import java.awt.BorderLayout;
24    import java.awt.Color;
25    import java.awt.FlowLayout;
26    import java.awt.Font;
27    import java.awt.GridLayout;
28    import java.awt.event.ActionEvent;
29    import java.awt.event.ActionListener;
30   
31    import javax.swing.JButton;
32    import javax.swing.JCheckBoxMenuItem;
33    import javax.swing.JComboBox;
34    import javax.swing.JInternalFrame;
35    import javax.swing.JLabel;
36    import javax.swing.JMenu;
37    import javax.swing.JMenuBar;
38    import javax.swing.JMenuItem;
39    import javax.swing.JPanel;
40    import javax.swing.event.MenuEvent;
41    import javax.swing.event.MenuListener;
42   
43    import jalview.util.ImageMaker.TYPE;
44    import jalview.util.MessageManager;
45   
 
46    public class GPCAPanel extends JInternalFrame
47    {
48    private static final Font VERDANA_12 = new Font("Verdana", 0, 12);
49   
50    protected JComboBox<String> xCombobox = new JComboBox<>();
51   
52    protected JComboBox<String> yCombobox = new JComboBox<>();
53   
54    protected JComboBox<String> zCombobox = new JComboBox<>();
55   
56    protected JMenu viewMenu = new JMenu();
57   
58    protected JCheckBoxMenuItem showLabels = new JCheckBoxMenuItem();
59   
60    protected JMenu associateViewsMenu = new JMenu();
61   
62    protected JLabel statusBar = new JLabel();
63   
64    protected JPanel statusPanel = new JPanel();
65   
66    protected JMenuItem originalSeqData;
67   
68    protected JMenuItem outputAlignment;
69   
70    /**
71    * Constructor
72    */
 
73  0 toggle public GPCAPanel()
74    {
75  0 this(8);
76    }
77   
 
78  0 toggle public GPCAPanel(int dim)
79    {
80  0 try
81    {
82  0 jbInit();
83    } catch (Exception e)
84    {
85  0 e.printStackTrace();
86    }
87   
88  0 for (int i = 1; i <= dim; i++)
89    {
90  0 xCombobox.addItem("dim " + i);
91  0 yCombobox.addItem("dim " + i);
92  0 zCombobox.addItem("dim " + i);
93    }
94    }
95   
 
96  0 toggle private void jbInit() throws Exception
97    {
98  0 setFrameIcon(null);
99  0 setName("jalview-"+this.getClass().getName());
100  0 this.getContentPane().setLayout(new BorderLayout());
101  0 JPanel jPanel2 = new JPanel();
102  0 jPanel2.setLayout(new FlowLayout());
103  0 JLabel jLabel1 = new JLabel();
104  0 jLabel1.setFont(VERDANA_12);
105  0 jLabel1.setText("x=");
106  0 JLabel jLabel2 = new JLabel();
107  0 jLabel2.setFont(VERDANA_12);
108  0 jLabel2.setText("y=");
109  0 JLabel jLabel3 = new JLabel();
110  0 jLabel3.setFont(VERDANA_12);
111  0 jLabel3.setText("z=");
112  0 jPanel2.setBackground(Color.white);
113  0 jPanel2.setBorder(null);
114  0 zCombobox.setFont(VERDANA_12);
115  0 zCombobox.addActionListener(new ActionListener()
116    {
 
117  0 toggle @Override
118    public void actionPerformed(ActionEvent e)
119    {
120  0 doDimensionChange();
121    }
122    });
123  0 yCombobox.setFont(VERDANA_12);
124  0 yCombobox.addActionListener(new ActionListener()
125    {
 
126  0 toggle @Override
127    public void actionPerformed(ActionEvent e)
128    {
129  0 doDimensionChange();
130    }
131    });
132  0 xCombobox.setFont(VERDANA_12);
133  0 xCombobox.addActionListener(new ActionListener()
134    {
 
135  0 toggle @Override
136    public void actionPerformed(ActionEvent e)
137    {
138  0 doDimensionChange();
139    }
140    });
141  0 JButton resetButton = new JButton();
142  0 resetButton.setFont(VERDANA_12);
143  0 resetButton.setText(MessageManager.getString("action.reset"));
144  0 resetButton.addActionListener(new ActionListener()
145    {
 
146  0 toggle @Override
147    public void actionPerformed(ActionEvent e)
148    {
149  0 resetButton_actionPerformed();
150    }
151    });
152  0 JMenu fileMenu = new JMenu();
153  0 fileMenu.setText(MessageManager.getString("action.file"));
154  0 JMenu saveMenu = new JMenu();
155  0 saveMenu.setText(MessageManager.getString("action.save_as"));
156  0 JMenuItem eps = new JMenuItem("EPS");
157  0 eps.addActionListener(new ActionListener()
158    {
 
159  0 toggle @Override
160    public void actionPerformed(ActionEvent e)
161    {
162  0 makePCAImage(TYPE.EPS);
163    }
164    });
165  0 JMenuItem png = new JMenuItem("PNG");
166  0 png.addActionListener(new ActionListener()
167    {
 
168  0 toggle @Override
169    public void actionPerformed(ActionEvent e)
170    {
171  0 makePCAImage(TYPE.PNG);
172    }
173    });
174  0 JMenuItem outputValues = new JMenuItem();
175  0 outputValues.setText(MessageManager.getString("label.output_values"));
176  0 outputValues.addActionListener(new ActionListener()
177    {
 
178  0 toggle @Override
179    public void actionPerformed(ActionEvent e)
180    {
181  0 outputValues_actionPerformed();
182    }
183    });
184  0 JMenuItem outputPoints = new JMenuItem();
185  0 outputPoints.setText(MessageManager.getString("label.output_points"));
186  0 outputPoints.addActionListener(new ActionListener()
187    {
 
188  0 toggle @Override
189    public void actionPerformed(ActionEvent e)
190    {
191  0 outputPoints_actionPerformed();
192    }
193    });
194  0 JMenuItem outputProjPoints = new JMenuItem();
195  0 outputProjPoints.setText(
196    MessageManager.getString("label.output_transformed_points"));
197  0 outputProjPoints.addActionListener(new ActionListener()
198    {
 
199  0 toggle @Override
200    public void actionPerformed(ActionEvent e)
201    {
202  0 outputProjPoints_actionPerformed();
203    }
204    });
205  0 JMenuItem print = new JMenuItem();
206  0 print.setText(MessageManager.getString("action.print"));
207  0 print.addActionListener(new ActionListener()
208    {
 
209  0 toggle @Override
210    public void actionPerformed(ActionEvent e)
211    {
212  0 print_actionPerformed();
213    }
214    });
215  0 outputAlignment = new JMenuItem();
216  0 outputAlignment
217    .setText(MessageManager.getString("label.output_alignment"));
218  0 outputAlignment.addActionListener(new ActionListener()
219    {
 
220  0 toggle @Override
221    public void actionPerformed(ActionEvent e)
222    {
223  0 outputAlignment_actionPerformed();
224    }
225    });
226  0 viewMenu.setText(MessageManager.getString("action.view"));
227  0 viewMenu.addMenuListener(new MenuListener()
228    {
 
229  0 toggle @Override
230    public void menuSelected(MenuEvent e)
231    {
232  0 viewMenu_menuSelected();
233    }
234   
 
235  0 toggle @Override
236    public void menuDeselected(MenuEvent e)
237    {
238    }
239   
 
240  0 toggle @Override
241    public void menuCanceled(MenuEvent e)
242    {
243    }
244    });
245  0 showLabels.setText(MessageManager.getString("label.show_labels"));
246  0 showLabels.addActionListener(new ActionListener()
247    {
 
248  0 toggle @Override
249    public void actionPerformed(ActionEvent e)
250    {
251  0 showLabels_actionPerformed();
252    }
253    });
254  0 JMenuItem bgcolour = new JMenuItem();
255  0 bgcolour.setText(MessageManager.getString("action.background_colour"));
256  0 bgcolour.addActionListener(new ActionListener()
257    {
 
258  0 toggle @Override
259    public void actionPerformed(ActionEvent e)
260    {
261  0 bgcolour_actionPerformed();
262    }
263    });
264  0 originalSeqData = new JMenuItem();
265  0 originalSeqData.setText(MessageManager.getString("label.input_data"));
266  0 originalSeqData.addActionListener(new ActionListener()
267    {
 
268  0 toggle @Override
269    public void actionPerformed(ActionEvent e)
270    {
271  0 originalSeqData_actionPerformed();
272    }
273    });
274  0 associateViewsMenu.setText(
275    MessageManager.getString("label.associate_nodes_with"));
276   
277  0 statusPanel.setLayout(new GridLayout());
278  0 statusBar.setFont(VERDANA_12);
279    // statusPanel.setBackground(Color.lightGray);
280    // statusBar.setBackground(Color.lightGray);
281    // statusPanel.add(statusBar, null);
282  0 JPanel panelBar = new JPanel(new BorderLayout());
283  0 panelBar.add(jPanel2, BorderLayout.NORTH);
284  0 panelBar.add(statusPanel, BorderLayout.SOUTH);
285  0 this.getContentPane().add(panelBar, BorderLayout.SOUTH);
286  0 jPanel2.add(jLabel1, null);
287  0 jPanel2.add(xCombobox, null);
288  0 jPanel2.add(jLabel2, null);
289  0 jPanel2.add(yCombobox, null);
290  0 jPanel2.add(jLabel3, null);
291  0 jPanel2.add(zCombobox, null);
292  0 jPanel2.add(resetButton, null);
293   
294  0 JMenuBar jMenuBar1 = new JMenuBar();
295  0 jMenuBar1.add(fileMenu);
296  0 jMenuBar1.add(viewMenu);
297  0 setJMenuBar(jMenuBar1);
298  0 fileMenu.add(saveMenu);
299  0 fileMenu.add(outputValues);
300  0 fileMenu.add(print);
301  0 fileMenu.add(originalSeqData);
302  0 fileMenu.add(outputPoints);
303  0 fileMenu.add(outputProjPoints);
304  0 fileMenu.add(outputAlignment);
305  0 saveMenu.add(eps);
306  0 saveMenu.add(png);
307  0 viewMenu.add(showLabels);
308  0 viewMenu.add(bgcolour);
309  0 viewMenu.add(associateViewsMenu);
310    }
311   
 
312  0 toggle protected void resetButton_actionPerformed()
313    {
314    }
315   
 
316  0 toggle protected void outputPoints_actionPerformed()
317    {
318    }
319   
 
320  0 toggle protected void outputProjPoints_actionPerformed()
321    {
322    }
323   
 
324  0 toggle protected void outputAlignment_actionPerformed()
325    {
326    }
327   
 
328  0 toggle public void makePCAImage(TYPE imageType)
329    {
330    }
331   
 
332  0 toggle protected void outputValues_actionPerformed()
333    {
334    }
335   
 
336  0 toggle protected void print_actionPerformed()
337    {
338    }
339   
 
340  0 toggle protected void showLabels_actionPerformed()
341    {
342    }
343   
 
344  0 toggle protected void bgcolour_actionPerformed()
345    {
346    }
347   
 
348  0 toggle protected void originalSeqData_actionPerformed()
349    {
350    }
351   
 
352  0 toggle protected void viewMenu_menuSelected()
353    {
354    }
355   
 
356  0 toggle protected void doDimensionChange()
357    {
358    }
359    }
  • Report generated by OpenClover v 4.4.1 on Thu Nov 7 2024 17:02:19 GMT using coverage data from Thu Jan 1 1970 01:00:00 GMT.
  • OpenClover is free and open-source software.