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Coverage Report

  1. Project Clover database Thu Nov 7 2024 13:01:17 GMT
  2. Package jalview.jbgui

File GSequenceLink.java

 

Coverage histogram

../../img/srcFileCovDistChart0.png
59% of files have more coverage

Code metrics

8
84
17
1
273
207
23
0.27
4.94
17
1.35

Classes

Class Line # Actions
45 84 23
0.00%
 

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No tests hitting this source file were found.

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1    /*
2    * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3    * Copyright (C) $$Year-Rel$$ The Jalview Authors
4    *
5    * This file is part of Jalview.
6    *
7    * Jalview is free software: you can redistribute it and/or
8    * modify it under the terms of the GNU General Public License
9    * as published by the Free Software Foundation, either version 3
10    * of the License, or (at your option) any later version.
11    *
12    * Jalview is distributed in the hope that it will be useful, but
13    * WITHOUT ANY WARRANTY; without even the implied warranty
14    * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15    * PURPOSE. See the GNU General Public License for more details.
16    *
17    * You should have received a copy of the GNU General Public License
18    * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19    * The Jalview Authors are detailed in the 'AUTHORS' file.
20    */
21    package jalview.jbgui;
22   
23    import jalview.gui.JvOptionPane;
24    import jalview.gui.JvSwingUtils;
25    import jalview.util.MessageManager;
26    import jalview.util.UrlLink;
27   
28    import java.awt.Font;
29    import java.awt.GridBagConstraints;
30    import java.awt.GridBagLayout;
31    import java.awt.Insets;
32    import java.awt.Rectangle;
33    import java.awt.event.ActionEvent;
34    import java.awt.event.ActionListener;
35    import java.awt.event.KeyAdapter;
36    import java.awt.event.KeyEvent;
37   
38    import javax.swing.BorderFactory;
39    import javax.swing.JButton;
40    import javax.swing.JLabel;
41    import javax.swing.JPanel;
42    import javax.swing.JTextField;
43    import javax.swing.SwingConstants;
44   
 
45    public class GSequenceLink extends JPanel
46    {
47   
48    JTextField nameTB = new JTextField();
49   
50    JTextField urlTB = new JTextField();
51   
52    JButton insertSeq = new JButton();
53   
54    JButton insertDBAcc = new JButton();
55   
56    JLabel insert = new JLabel();
57   
58    JLabel jLabel1 = new JLabel();
59   
60    JLabel jLabel2 = new JLabel();
61   
62    JLabel jLabel3 = new JLabel();
63   
64    JLabel jLabel4 = new JLabel();
65   
66    JLabel jLabel5 = new JLabel();
67   
68    JLabel jLabel6 = new JLabel();
69   
70    JPanel jPanel1 = new JPanel();
71   
72    GridBagLayout gridBagLayout1 = new GridBagLayout();
73   
 
74  0 toggle public GSequenceLink()
75    {
76  0 try
77    {
78  0 jbInit();
79    } catch (Exception ex)
80    {
81  0 ex.printStackTrace();
82    }
83    }
84   
 
85  0 toggle private void jbInit() throws Exception
86    {
87  0 this.setLayout(gridBagLayout1);
88  0 nameTB.setFont(JvSwingUtils.getLabelFont());
89  0 nameTB.setBounds(new Rectangle(77, 10, 310, 23));
90  0 nameTB.addKeyListener(new KeyAdapter()
91    {
 
92  0 toggle @Override
93    public void keyTyped(KeyEvent e)
94    {
95  0 nameTB_keyTyped(e);
96    }
97    });
98  0 urlTB.setFont(JvSwingUtils.getLabelFont());
99  0 urlTB.setText("http://");
100  0 urlTB.setBounds(new Rectangle(78, 40, 309, 23));
101  0 urlTB.addKeyListener(new KeyAdapter()
102    {
 
103  0 toggle @Override
104    public void keyTyped(KeyEvent e)
105    {
106  0 urlTB_keyTyped(e);
107    }
108    });
109   
110  0 insertSeq.setLocation(77, 75);
111  0 insertSeq.setSize(141, 24);
112  0 insertSeq.setText(MessageManager.getString("action.seq_id"));
113  0 insertSeq.addActionListener(new ActionListener()
114    {
 
115  0 toggle @Override
116    public void actionPerformed(ActionEvent e)
117    {
118  0 insertSeq_action(e);
119    }
120    });
121   
122  0 insertDBAcc.setLocation(210, 75);
123  0 insertDBAcc.setSize(141, 24);
124  0 insertDBAcc.setText(MessageManager.getString("action.db_acc"));
125  0 insertDBAcc.addActionListener(new ActionListener()
126    {
 
127  0 toggle @Override
128    public void actionPerformed(ActionEvent e)
129    {
130  0 insertDBAcc_action(e);
131    }
132    });
133   
134  0 insert.setText(MessageManager.getString("label.insert"));
135  0 insert.setFont(JvSwingUtils.getLabelFont());
136  0 insert.setHorizontalAlignment(SwingConstants.RIGHT);
137  0 insert.setBounds(17, 78, 58, 16);
138   
139  0 jLabel1.setFont(JvSwingUtils.getLabelFont());
140  0 jLabel1.setHorizontalAlignment(SwingConstants.TRAILING);
141  0 jLabel1.setText(MessageManager.getString("label.link_name"));
142  0 jLabel1.setBounds(new Rectangle(4, 10, 71, 24));
143  0 jLabel2.setFont(JvSwingUtils.getLabelFont());
144  0 jLabel2.setHorizontalAlignment(SwingConstants.TRAILING);
145  0 jLabel2.setText(MessageManager.getString("label.url:"));
146  0 jLabel2.setBounds(new Rectangle(17, 37, 54, 27));
147  0 jLabel3.setFont(new java.awt.Font("Verdana", Font.ITALIC, 11));
148  0 jLabel3.setText(MessageManager.getString("label.use_sequence_id_1"));
149  0 jLabel3.setBounds(new Rectangle(21, 102, 351, 15));
150  0 jLabel4.setFont(new java.awt.Font("Verdana", Font.ITALIC, 11));
151  0 jLabel4.setText(MessageManager.getString("label.use_sequence_id_2"));
152  0 jLabel4.setBounds(new Rectangle(21, 118, 351, 15));
153  0 jLabel5.setFont(new java.awt.Font("Verdana", Font.ITALIC, 11));
154  0 jLabel5.setText(MessageManager.getString("label.use_sequence_id_3"));
155  0 jLabel5.setBounds(new Rectangle(21, 136, 351, 15));
156   
157  0 String lastLabel = MessageManager.getString("label.use_sequence_id_4");
158  0 if (lastLabel.length() > 0)
159    {
160    // e.g. Spanish version has longer text
161  0 jLabel6.setFont(new java.awt.Font("Verdana", Font.ITALIC, 11));
162  0 jLabel6.setText(lastLabel);
163  0 jLabel6.setBounds(new Rectangle(21, 152, 351, 15));
164    }
165   
166  0 jPanel1.setBorder(BorderFactory.createEtchedBorder());
167  0 jPanel1.setLayout(null);
168  0 jPanel1.add(jLabel1);
169  0 jPanel1.add(nameTB);
170  0 jPanel1.add(urlTB);
171  0 jPanel1.add(insertSeq);
172  0 jPanel1.add(insertDBAcc);
173  0 jPanel1.add(insert);
174  0 jPanel1.add(jLabel2);
175  0 jPanel1.add(jLabel3);
176  0 jPanel1.add(jLabel4);
177  0 jPanel1.add(jLabel5);
178   
179  0 int height = 160;
180  0 if (lastLabel.length() > 0)
181    {
182  0 jPanel1.add(jLabel6);
183  0 height = 176;
184    }
185   
186  0 this.add(jPanel1,
187    new GridBagConstraints(0, 0, 1, 1, 1.0, 1.0,
188    GridBagConstraints.CENTER, GridBagConstraints.BOTH,
189    new Insets(5, 4, 6, 5), 390, height));
190    }
191   
 
192  0 toggle @Override
193    public void setName(String name)
194    {
195  0 nameTB.setText(name);
196    }
197   
 
198  0 toggle public void setURL(String url)
199    {
200  0 urlTB.setText(url);
201    }
202   
 
203  0 toggle @Override
204    public String getName()
205    {
206  0 return nameTB.getText();
207    }
208   
 
209  0 toggle public String getURL()
210    {
211  0 return urlTB.getText();
212    }
213   
 
214  0 toggle public boolean checkValid()
215    {
216  0 UrlLink ul = new UrlLink("foo|" + urlTB.getText().trim());
217  0 if (ul.isValid() && ul.isDynamic())
218    {
219  0 return true;
220    }
221   
222  0 JvOptionPane.showInternalMessageDialog(jalview.gui.Desktop.desktop,
223    MessageManager.getString("warn.url_must_contain"),
224    MessageManager.getString("label.invalid_url"),
225    JvOptionPane.WARNING_MESSAGE);
226  0 return false;
227    }
228   
 
229  0 toggle public void notifyDuplicate()
230    {
231  0 JvOptionPane.showInternalMessageDialog(jalview.gui.Desktop.desktop,
232    MessageManager.getString("warn.name_cannot_be_duplicate"),
233    MessageManager.getString("label.invalid_name"),
234    JvOptionPane.WARNING_MESSAGE);
235    }
236   
 
237  0 toggle public void nameTB_keyTyped(KeyEvent e)
238    {
239  0 if (e.getKeyChar() == '|')
240    {
241  0 e.consume();
242    }
243    }
244   
 
245  0 toggle public void urlTB_keyTyped(KeyEvent e)
246    {
247    // URLLink object validation takes care of incorrect regexes.
248    // if (e.getKeyChar() == '|' || e.getKeyChar() == ' ')
249    // {
250    // e.consume();
251    // }
252   
253    }
254   
 
255  0 toggle public void insertSeq_action(ActionEvent e)
256    {
257  0 insertIntoUrl(insertSeq.getText());
258    }
259   
 
260  0 toggle public void insertDBAcc_action(ActionEvent e)
261    {
262  0 insertIntoUrl(insertDBAcc.getText());
263    }
264   
 
265  0 toggle private void insertIntoUrl(String insertion)
266    {
267  0 int pos = urlTB.getCaretPosition();
268  0 String text = urlTB.getText();
269  0 String newText = text.substring(0, pos) + insertion
270    + text.substring(pos);
271  0 urlTB.setText(newText);
272    }
273    }