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mc_view.Residue
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mc_view.PDBChain
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com.stevesoft.pat.OrMark
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com.stevesoft.pat.oneChar
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jalview.io.StructureFile
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org.json.simple.parser.Yylex
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jalview.datamodel.SearchResults
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jalview.gui.AppJmol
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jalview.util.Format
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jalview.datamodel.SequenceFeature
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jalview.io.AlignFile
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jalview.gui.IdwidthAdjuster
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jalview.ws.jws1.Discoverer
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jalview.renderer.seqfeatures.FeatureColourFinder
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com.stevesoft.pat.Pattern
com.stevesoft.pat.Pattern
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org.json.simple.parser.JSONParser
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ext.vamsas.ServiceHandle
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jalview.schemes.JalviewColourScheme
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jalview.io.IdentifyFile
jalview.io.IdentifyFile
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mc_view.Atom
mc_view.Atom
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com.stevesoft.pat.Or
com.stevesoft.pat.Or
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jalview.schemes.IdColourScheme
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jalview.gui.JvSwingUtils
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jalview.datamodel.features.FeatureStore
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jalview.io.JalviewFileChooser
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jalview.util.HttpUtils
jalview.util.HttpUtils
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0.2514619825.1%
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com.stevesoft.pat.Regex
com.stevesoft.pat.Regex
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0.250909125.1%
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jalview.renderer.AnnotationRendererFactory
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0.2525%
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jalview.ws.uimodel.AlignAnalysisUIText
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jalview.ws.rest.params.Alignment
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jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
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jalview.datamodel.SequenceCursor
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jalview.structure.StructureCommandsBase
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jalview.ext.jmol.JmolCommands
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com.stevesoft.pat.Range
com.stevesoft.pat.Range
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com.stevesoft.pat.Bracket
com.stevesoft.pat.Bracket
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jalview.ws.jws2.Jws2Client
jalview.ws.jws2.Jws2Client
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0.2228915722.3%
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jalview.gui.ScalePanel
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0.2226562522.3%
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jalview.viewmodel.seqfeatures.FeaturesDisplayed
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jalview.gui.PromptUserConfig
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0.215909121.6%
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jalview.io.PDBFeatureSettings
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jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
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0.2140391321.4%
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jalview.util.QuickSort
jalview.util.QuickSort
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0.2135922321.4%
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jalview.datamodel.features.FeatureAttributes.AttributeData
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0.2127659621.3%
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jalview.analysis.scoremodels.ScoreModels
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0.2115384621.2%
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jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
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0.2109704621.1%
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jalview.ws.rest.InputType
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0.2056074720.6%
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jalview.io.FileParse
jalview.io.FileParse
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0.2033426220.3%
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jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
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0.1970443319.7%
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jalview.datamodel.Alignment
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jalview.gui.StructureViewer
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jalview.schemes.Blosum62ColourScheme
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com.stevesoft.pat.patInt
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jalview.ws.jws2.JabaParamStore
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jalview.workers.AlignCalcWorker
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jalview.log.JLogger
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jalview.util.Platform
jalview.util.Platform
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jalview.schemes.PIDColourScheme
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jalview.bin.Console
jalview.bin.Console
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jalview.structure.AtomSpec
jalview.structure.AtomSpec
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
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jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
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jalview.io.FormatAdapter
jalview.io.FormatAdapter
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0.1212%
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jalview.structure.StructureCommand
jalview.structure.StructureCommand
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0.1212%
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jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
|
0.11538461611.5%
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jalview.gui.BlogReader
jalview.gui.BlogReader
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0.11325966611.3%
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jalview.gui.Desktop.MyDesktopManager
jalview.gui.Desktop.MyDesktopManager
|
0.1111111111.1%
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jalview.util.ShortcutKeyMaskExWrapper
jalview.util.ShortcutKeyMaskExWrapper
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0.1111111111.1%
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jalview.ws.sifts.SiftsSettings
jalview.ws.sifts.SiftsSettings
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0.1111111111.1%
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jalview.schemes.ColourSchemeProperty
jalview.schemes.ColourSchemeProperty
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0.1111111111.1%
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jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
|
0.1095890411%
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jalview.io.FileFormat
jalview.io.FileFormat
|
0.1085271310.9%
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jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
|
0.10679611610.7%
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jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
|
0.1028806610.3%
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jalview.datamodel.DBRefEntry
jalview.datamodel.DBRefEntry
|
0.1027397310.3%
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jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
|
0.10256410410.3%
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jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
|
0.110%
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com.stevesoft.pat.parsePerl
com.stevesoft.pat.parsePerl
|
0.098639469.9%
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jalview.gui.Desktop
jalview.gui.Desktop
|
0.097380419.7%
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org.json.simple.parser.Yytoken
org.json.simple.parser.Yytoken
|
0.096774199.7%
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jalview.util.ChannelProperties
jalview.util.ChannelProperties
|
0.0965517249.7%
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jalview.util.StringUtils
jalview.util.StringUtils
|
0.092219029.2%
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jalview.util.JSONUtils
jalview.util.JSONUtils
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0.090909099.1%
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jalview.schemes.FeatureColour
jalview.schemes.FeatureColour
|
0.090526319.1%
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
|
0.087613298.8%
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jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
|
0.086956528.7%
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jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
|
0.085106388.5%
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jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
|
0.0833333368.3%
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jalview.gui.Console
jalview.gui.Console
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0.081081088.1%
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jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
|
0.081081088.1%
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jalview.urls.UrlProvider
jalview.urls.UrlProvider
|
0.079207927.9%
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jalview.datamodel.ContactMapHolder
jalview.datamodel.ContactMapHolder
|
0.076923087.7%
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jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
|
0.074766357.5%
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com.stevesoft.pat.FastMulti
com.stevesoft.pat.FastMulti
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0.0740740757.4%
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jalview.schemes.ColourSchemes
jalview.schemes.ColourSchemes
|
0.070175447%
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jalview.util.ColorUtils
jalview.util.ColorUtils
|
0.067278296.7%
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jalview.gui.IdPanel
jalview.gui.IdPanel
|
0.067264576.7%
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com.stevesoft.pat.RegOpt
com.stevesoft.pat.RegOpt
|
0.06474826.5%
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jalview.analysis.CrossRef
jalview.analysis.CrossRef
|
0.063524596.4%
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jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
|
0.059405945.9%
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jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
|
0.0577777775.8%
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jalview.urls.CustomUrlProvider
jalview.urls.CustomUrlProvider
|
0.0569620245.7%
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jalview.bin.Cache
jalview.bin.Cache
|
0.056318685.6%
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jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.0542452825.4%
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jalview.gui.SeqPanel
jalview.gui.SeqPanel
|
0.0541254135.4%
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jalview.analysis.GeneticCodes
jalview.analysis.GeneticCodes
|
0.0496894425%
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jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.04566214.6%
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jalview.gui.WsParamSetManager
jalview.gui.WsParamSetManager
|
0.0429447854.3%
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org.json.simple.JSONObject
org.json.simple.JSONObject
|
0.037735853.8%
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jalview.urls.IdentifiersUrlProvider
jalview.urls.IdentifiersUrlProvider
|
0.0366972463.7%
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jalview.util.MapList
jalview.util.MapList
|
0.0358255473.6%
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jalview.util.UrlLink
jalview.util.UrlLink
|
0.034090913.4%
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jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
|
0.0310559013.1%
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com.stevesoft.pat.RegRes
com.stevesoft.pat.RegRes
|
0.0289855082.9%
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jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
|
0.0254237282.5%
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jalview.datamodel.Mapping
jalview.datamodel.Mapping
|
0.0216450232.2%
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jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
0.017182131.7%
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jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
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jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
|
0.0155642021.6%
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mc_view.PDBfile
mc_view.PDBfile
|
0.0150375941.5%
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jalview.controller.AlignViewController
jalview.controller.AlignViewController
|
0.0136518771.4%
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jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
|
0.0124269011.2%
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jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
|
0.0122699381.2%
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jalview.bin.Jalview
jalview.bin.Jalview
|
0.0117328521.2%
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jalview.gui.SequenceFetcher
jalview.gui.SequenceFetcher
|
0.0089285720.9%
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jalview.bin.argparser.BootstrapArgs
jalview.bin.argparser.BootstrapArgs
|
0.0082644620.8%
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jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
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org.json.simple.JSONArray
org.json.simple.JSONArray
|
0.0080645160.8%
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jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
|
0.007547170.8%
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jalview.gui.QuitHandler
jalview.gui.QuitHandler
|
0.00722021660.7%
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com.stevesoft.pat.CaseMgr
com.stevesoft.pat.CaseMgr
|
0.00278551530.3%
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jalview.schemes.ResidueProperties
jalview.schemes.ResidueProperties
|
0.00105042020.1%
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