Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
AtomSpecTest	29	62	10	0.00%	Show methods

Class AtomSpecTest

Class AtomSpecTest	Line # 29	Total Statements 62	Complexity 10	TOTAL Coverage 0.00%
testFromChimeraAtomSpec() : void   testFromChimeraAtomSpec() : void	3131	31.031	5.05	0.0 0.00%
testFromChimeraXAtomSpec() : void   testFromChimeraXAtomSpec() : void	9595	31.031	5.05	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.structure;
22
23		import static org.testng.Assert.assertEquals;
24		import static org.testng.Assert.assertNull;
25		import static org.testng.Assert.fail;
26
27		import org.testng.annotations.Test;
28
		0% Uncovered Elements: 64 (64) Complexity: 10 Complexity Density: 0.16
29		public class AtomSpecTest
30		{
		0% Uncovered Elements: 31 (31) Complexity: 5 Complexity Density: 0.16 4-
31	0	@Test...
32		public void testFromChimeraAtomSpec()
33		{
34	0	AtomSpec as = AtomSpec.fromChimeraAtomspec("#1:12.B");
35	0	assertEquals(as.getModelNumber(), 1);
36	0	assertEquals(as.getPdbResNum(), 12);
37	0	assertEquals(as.getChain(), "B");
38	0	assertNull(as.getPdbFile());
39
40		// no model - default to zero
41	0	as = AtomSpec.fromChimeraAtomspec(":13.C");
42	0	assertEquals(as.getModelNumber(), 0);
43	0	assertEquals(as.getPdbResNum(), 13);
44	0	assertEquals(as.getChain(), "C");
45	0	assertNull(as.getPdbFile());
46
47		// model.submodel
48	0	as = AtomSpec.fromChimeraAtomspec("#3.2:15");
49	0	assertEquals(as.getModelNumber(), 3);
50	0	assertEquals(as.getPdbResNum(), 15);
51	0	assertEquals(as.getChain(), "");
52	0	assertNull(as.getPdbFile());
53
54	0	String spec = "3:12.B";
55	0	try
56		{
57	0	as = AtomSpec.fromChimeraAtomspec(spec);
58	0	fail("Expected exception for " + spec);
59		} catch (IllegalArgumentException e)
60		{
61		// ok
62		}
63
64	0	spec = "#3:12-14.B";
65	0	try
66		{
67	0	as = AtomSpec.fromChimeraAtomspec(spec);
68	0	fail("Expected exception for " + spec);
69		} catch (IllegalArgumentException e)
70		{
71		// ok
72		}
73
74	0	spec = "";
75	0	try
76		{
77	0	as = AtomSpec.fromChimeraAtomspec(spec);
78	0	fail("Expected exception for " + spec);
79		} catch (IllegalArgumentException e)
80		{
81		// ok
82		}
83
84	0	spec = null;
85	0	try
86		{
87	0	as = AtomSpec.fromChimeraAtomspec(spec);
88	0	fail("Expected exception for " + spec);
89		} catch (NullPointerException e)
90		{
91		// ok
92		}
93		}
94
		0% Uncovered Elements: 31 (31) Complexity: 5 Complexity Density: 0.16 4-
95	0	@Test...
96		public void testFromChimeraXAtomSpec()
97		{
98	0	AtomSpec as = AtomSpec.fromChimeraXAtomspec("#1/B:12");
99	0	assertEquals(as.getModelNumber(), 1);
100	0	assertEquals(as.getPdbResNum(), 12);
101	0	assertEquals(as.getChain(), "B");
102	0	assertNull(as.getPdbFile());
103
104		// no model - default to zero
105	0	as = AtomSpec.fromChimeraXAtomspec("/C:13");
106	0	assertEquals(as.getModelNumber(), 0);
107	0	assertEquals(as.getPdbResNum(), 13);
108	0	assertEquals(as.getChain(), "C");
109	0	assertNull(as.getPdbFile());
110
111		// model.submodel
112	0	as = AtomSpec.fromChimeraXAtomspec("#3.2/:15");
113	0	assertEquals(as.getModelNumber(), 3);
114	0	assertEquals(as.getPdbResNum(), 15);
115	0	assertEquals(as.getChain(), "");
116	0	assertNull(as.getPdbFile());
117
118	0	String spec = "3:12.B";
119	0	try
120		{
121	0	as = AtomSpec.fromChimeraXAtomspec(spec);
122	0	fail("Expected exception for " + spec);
123		} catch (IllegalArgumentException e)
124		{
125		// ok
126		}
127
128	0	spec = "#3:12-14.B";
129	0	try
130		{
131	0	as = AtomSpec.fromChimeraXAtomspec(spec);
132	0	fail("Expected exception for " + spec);
133		} catch (IllegalArgumentException e)
134		{
135		// ok
136		}
137
138	0	spec = "";
139	0	try
140		{
141	0	as = AtomSpec.fromChimeraXAtomspec(spec);
142	0	fail("Expected exception for " + spec);
143		} catch (IllegalArgumentException e)
144		{
145		// ok
146		}
147
148	0	spec = null;
149	0	try
150		{
151	0	as = AtomSpec.fromChimeraXAtomspec(spec);
152	0	fail("Expected exception for " + spec);
153		} catch (NullPointerException e)
154		{
155		// ok
156		}
157		}
158		}