Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
TrimRegionCommandTest	41	43	8	1.0100%	Show methods

Class TrimRegionCommandTest

Class TrimRegionCommandTest	Line # 41	Total Statements 43	Complexity 8	TOTAL Coverage 1.0100%
setUpJvOptionPane() : void   setUpJvOptionPane() : void	4444	2.02	1.01	1.0 1.0100%
setUp() : void   setUp() : void	5353	5.05	1.01	1.0 1.0100%
testTrimLeft_withUndoAndRedo() : void   testTrimLeft_withUndoAndRedo() : void	6666	10.010	1.01	1.0 1.0100%
testTrimLeft_noColumns() : void   testTrimLeft_noColumns() : void	9494	4.04	1.01	1.0 1.0100%
testTrimLeft_oneColumn() : void   testTrimLeft_oneColumn() : void	107107	4.04	1.01	1.0 1.0100%
testTrimRight_noColumns() : void   testTrimRight_noColumns() : void	121121	4.04	1.01	1.0 1.0100%
testTrimRight_oneColumn() : void   testTrimRight_oneColumn() : void	134134	4.04	1.01	1.0 1.0100%
testTrimRight_withUndoAndRedo() : void   testTrimRight_withUndoAndRedo() : void	147147	10.010	1.01	1.0 1.0100%

 

Contributing tests

Contributing tests

Select all

	Test contribution	Test	Result	Actions
	0.21568628	jalview.commands.TrimRegionCommandTest.testTrimRight_withUndoAndRedojalview.commands.TrimRegionCommandTest.testTrimRight_withUndoAndRedo	1PASS
	0.21568628	jalview.commands.TrimRegionCommandTest.testTrimLeft_withUndoAndRedojalview.commands.TrimRegionCommandTest.testTrimLeft_withUndoAndRedo	1PASS
	0.09803922	jalview.commands.TrimRegionCommandTest.testTrimLeft_noColumnsjalview.commands.TrimRegionCommandTest.testTrimLeft_noColumns	1PASS
	0.09803922	jalview.commands.TrimRegionCommandTest.testTrimRight_noColumnsjalview.commands.TrimRegionCommandTest.testTrimRight_noColumns	1PASS
	0.09803922	jalview.commands.TrimRegionCommandTest.testTrimLeft_oneColumnjalview.commands.TrimRegionCommandTest.testTrimLeft_oneColumn	1PASS
	0.09803922	jalview.commands.TrimRegionCommandTest.testTrimRight_oneColumnjalview.commands.TrimRegionCommandTest.testTrimRight_oneColumn	1PASS

 

Source view

1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.commands;
22
23		import static org.testng.AssertJUnit.assertEquals;
24
25		import jalview.datamodel.Alignment;
26		import jalview.datamodel.AlignmentI;
27		import jalview.datamodel.Sequence;
28		import jalview.datamodel.SequenceI;
29		import jalview.gui.JvOptionPane;
30
31		import org.testng.annotations.BeforeClass;
32		import org.testng.annotations.BeforeMethod;
33		import org.testng.annotations.Test;
34
35		/**
36		* Unit tests for TrimRegionCommand
37		*
38		* @author gmcarstairs
39		*
40		*/
		100% Uncovered Elements: 0 (51) Complexity: 8 Complexity Density: 0.19
41		public class TrimRegionCommandTest
42		{
43
		100% Uncovered Elements: 0 (2) Complexity: 1 Complexity Density: 0.5
44	1	@BeforeClass(alwaysRun = true)...
45		public void setUpJvOptionPane()
46		{
47	1	JvOptionPane.setInteractiveMode(false);
48	1	JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
49		}
50
51		private AlignmentI al;
52
		100% Uncovered Elements: 0 (5) Complexity: 1 Complexity Density: 0.2
53	6	@BeforeMethod(alwaysRun = true)...
54		public void setUp()
55		{
56	6	SequenceI[] seqs = new SequenceI[2];
57	6	seqs[0] = new Sequence("seq0", "abcde-");
58	6	seqs[1] = new Sequence("seq1", "-ghjkl");
59	6	al = new Alignment(seqs);
60	6	al.setDataset(null);
61		}
62
63		/**
64		* Test performing, undoing and redoing a 'trim left'
65		*/
		100% Uncovered Elements: 0 (10) Complexity: 1 Complexity Density: 0.1 1PASS
66	1	@Test(groups = { "Functional" })...
67		public void testTrimLeft_withUndoAndRedo()
68		{
69	1	TrimRegionCommand cmd = new TrimRegionCommand("Remove Left", true,
70		al.getSequencesArray(), 2, al);
71	1	assertEquals(2, cmd.getSize());
72	1	assertEquals("cde-", al.getSequenceAt(0).getSequenceAsString());
73	1	assertEquals("hjkl", al.getSequenceAt(1).getSequenceAsString());
74
75		/*
76		* undo and verify
77		*/
78	1	cmd.undoCommand(new AlignmentI[] { al });
79	1	assertEquals("abcde-", al.getSequenceAt(0).getSequenceAsString());
80	1	assertEquals("-ghjkl", al.getSequenceAt(1).getSequenceAsString());
81
82		/*
83		* redo and verify
84		*/
85	1	cmd.doCommand(new AlignmentI[] { al });
86	1	assertEquals("cde-", al.getSequenceAt(0).getSequenceAsString());
87	1	assertEquals("hjkl", al.getSequenceAt(1).getSequenceAsString());
88		}
89
90		/**
91		* Trim left of no columns - should do nothing. This is the case where the
92		* first column is selected and 'Remove Left' is selected.
93		*/
		100% Uncovered Elements: 0 (4) Complexity: 1 Complexity Density: 0.25 1PASS
94	1	@Test(groups = { "Functional" })...
95		public void testTrimLeft_noColumns()
96		{
97	1	TrimRegionCommand cmd = new TrimRegionCommand("Remove Left", true,
98		al.getSequencesArray(), 0, al);
99	1	assertEquals(0, cmd.getSize());
100	1	assertEquals("abcde-", al.getSequenceAt(0).getSequenceAsString());
101	1	assertEquals("-ghjkl", al.getSequenceAt(1).getSequenceAsString());
102		}
103
104		/**
105		* Trim left of a single column
106		*/
		100% Uncovered Elements: 0 (4) Complexity: 1 Complexity Density: 0.25 1PASS
107	1	@Test(groups = { "Functional" })...
108		public void testTrimLeft_oneColumn()
109		{
110	1	TrimRegionCommand cmd = new TrimRegionCommand("Remove Left", true,
111		al.getSequencesArray(), 1, al);
112	1	assertEquals(1, cmd.getSize());
113	1	assertEquals("bcde-", al.getSequenceAt(0).getSequenceAsString());
114	1	assertEquals("ghjkl", al.getSequenceAt(1).getSequenceAsString());
115		}
116
117		/**
118		* Trim right of no columns - should do nothing. This is the case where the
119		* last column is selected and 'Remove Right' is selected.
120		*/
		100% Uncovered Elements: 0 (4) Complexity: 1 Complexity Density: 0.25 1PASS
121	1	@Test(groups = { "Functional" })...
122		public void testTrimRight_noColumns()
123		{
124	1	TrimRegionCommand cmd = new TrimRegionCommand("Remove Right", false,
125		al.getSequencesArray(), 5, al);
126	1	assertEquals(0, cmd.getSize());
127	1	assertEquals("abcde-", al.getSequenceAt(0).getSequenceAsString());
128	1	assertEquals("-ghjkl", al.getSequenceAt(1).getSequenceAsString());
129		}
130
131		/**
132		* Trim right of a single column
133		*/
		100% Uncovered Elements: 0 (4) Complexity: 1 Complexity Density: 0.25 1PASS
134	1	@Test(groups = { "Functional" })...
135		public void testTrimRight_oneColumn()
136		{
137	1	TrimRegionCommand cmd = new TrimRegionCommand("Remove Right", false,
138		al.getSequencesArray(), 4, al);
139	1	assertEquals(1, cmd.getSize());
140	1	assertEquals("abcde", al.getSequenceAt(0).getSequenceAsString());
141	1	assertEquals("-ghjk", al.getSequenceAt(1).getSequenceAsString());
142		}
143
144		/**
145		* Test performing, undoing and redoing a 'trim right'
146		*/
		100% Uncovered Elements: 0 (10) Complexity: 1 Complexity Density: 0.1 1PASS
147	1	@Test(groups = { "Functional" })...
148		public void testTrimRight_withUndoAndRedo()
149		{
150	1	TrimRegionCommand cmd = new TrimRegionCommand("Remove Right", false,
151		al.getSequencesArray(), 2, al);
152	1	assertEquals(3, cmd.getSize());
153	1	assertEquals("abc", al.getSequenceAt(0).getSequenceAsString());
154	1	assertEquals("-gh", al.getSequenceAt(1).getSequenceAsString());
155
156		/*
157		* undo and verify
158		*/
159	1	cmd.undoCommand(new AlignmentI[] { al });
160	1	assertEquals("abcde-", al.getSequenceAt(0).getSequenceAsString());
161	1	assertEquals("-ghjkl", al.getSequenceAt(1).getSequenceAsString());
162
163		/*
164		* redo and verify
165		*/
166	1	cmd.doCommand(new AlignmentI[] { al });
167	1	assertEquals("abc", al.getSequenceAt(0).getSequenceAsString());
168	1	assertEquals("-gh", al.getSequenceAt(1).getSequenceAsString());
169		}
170		}