Build: #6 failed
Job: Clover and Tests failed
Build log
The build generated 284 lines of output. Download or view full build log
11-Nov-2024 17:27:01 | Build Jalview Builds - Gradle Develop Build - bug-JAL-4477_unmapped_filename_characters - Clover and Tests #6 (JB-GDB637-JOB1-6) started building on agent Default Agent |
11-Nov-2024 17:27:01 | |
11-Nov-2024 17:27:01 | Build working directory is /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1 |
11-Nov-2024 17:27:01 | Executing build Jalview Builds - Gradle Develop Build - bug-JAL-4477_unmapped_filename_characters - Clover and Tests #6 (JB-GDB637-JOB1-6) |
11-Nov-2024 17:27:01 | Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' |
11-Nov-2024 17:27:01 | Checking out into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1 |
11-Nov-2024 17:27:01 | Updating source code to revision: a8875a08d16716161d51d26824b551ddc79fca9b |
11-Nov-2024 17:27:01 | Fetching 'refs/heads/bug/JAL-4477_unmapped_filename_characters' from 'http://source.jalview.org/git/jalview.git'. |
11-Nov-2024 17:27:01 | Checking out revision a8875a08d16716161d51d26824b551ddc79fca9b. |
11-Nov-2024 17:27:02 | From file:///srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache/2597b807d50ab756c763be1d374b09c84289a164 |
11-Nov-2024 17:27:02 | d7c3dc7..a8875a0 bug/JAL-4477_unmapped_filename_characters -> origin/bug/JAL-4477_unmapped_filename_characters |
11-Nov-2024 17:27:02 | 67eb1f5..416aad3 develop -> origin/develop |
11-Nov-2024 17:27:02 | Your branch is behind 'origin/bug/JAL-4477_unmapped_filename_characters' by 1 commit, and can be fast-forwarded. |
11-Nov-2024 17:27:02 | (use "git pull" to update your local branch) |
11-Nov-2024 17:27:02 | Already on 'bug/JAL-4477_unmapped_filename_characters' |
11-Nov-2024 17:27:02 | HEAD is now at a8875a0 JAL-4477 missing import ? not sure how I missed this ! |
11-Nov-2024 17:27:02 | Updated source code to revision: a8875a08d16716161d51d26824b551ddc79fca9b |
11-Nov-2024 17:27:02 | Finished task 'Checkout Default Repository' with result: Success |
11-Nov-2024 17:27:02 | Running pre-build action: VCS Version Collector |
11-Nov-2024 17:27:02 | Running pre-build action: Artifactory Release Staging |
11-Nov-2024 17:27:02 | Starting task 'Run tests with openclover under gradle' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask' |
11-Nov-2024 17:27:02 | Bamboo Artifactory Plugin version: 2.6.2 |
11-Nov-2024 17:27:02 | Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build - bug-JAL-4477_unmapped_filename_characters - Clover and Tests #6 (JB-GDB637-JOB1-6)' ... running command line: /home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=bug/JAL-4477_unmapped_filename_characters bamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr CATALINA_PID=/home/bamboo/latest/work/bamboo.pid bamboo_planRepository_1_branchDisplayName=bug/JAL-4477_unmapped_filename_characters bamboo_repository_revision_number=a8875a08d16716161d51d26824b551ddc79fca9b bamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDB637-JOB1-6 JAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048 bamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1 bamboo_planRepository_1_name=Jalview Git bamboo_buildKey=JB-GDB637-JOB1 bamboo_repository_46498157_git_repositoryUrl=http://source.jalview.org/git/jalview.git bamboo_shortPlanName=bug-JAL-4477_unmapped_filename_characters bamboo_repository_46498157_revision_number=a8875a08d16716161d51d26824b551ddc79fca9b bamboo_planRepository_name=Jalview Git LOGNAME=bamboo bamboo_buildNumber=6 PWD=/ bamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse bamboo_shortJobName=Clover and Tests bamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDB637-JOB1-6 bamboo_planRepository_repositoryUrl=http://source.jalview.org/git/jalview.git SHELL=/bin/bash bamboo_agentId=196609 bamboo_planName=Jalview Builds - Gradle Develop Build - bug-JAL-4477_unmapped_filename_characters bamboo_shortPlanKey=GDB637 bamboo_repository_46498157_git_branch=bug/JAL-4477_unmapped_filename_characters bamboo_shortJobKey=JOB1 bamboo_repository_46498157_previous_revision_number=d7c3dc79c05b6bcfb728e455ed8148650d00d551 bamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk bamboo_planRepository_revision=a8875a08d16716161d51d26824b551ddc79fca9b bamboo_buildTimeStamp=2024-11-11T17:27:01.674Z bamboo_repository_previous_revision_number=d7c3dc79c05b6bcfb728e455ed8148650d00d551 bamboo_planRepository_previousRevision=d7c3dc79c05b6bcfb728e455ed8148650d00d551 bamboo_repository_git_branch=bug/JAL-4477_unmapped_filename_characters bamboo_buildResultKey=JB-GDB637-JOB1-6 bamboo_repository_branch_name=bug/JAL-4477_unmapped_filename_characters bamboo_buildPlanName=Jalview Builds - Gradle Develop Build - bug-JAL-4477_unmapped_filename_characters - Clover and Tests bamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11 bamboo_repository_46498157_git_username= bamboo_planRepository_1_revision=a8875a08d16716161d51d26824b551ddc79fca9b SHLVL=1 bamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant bamboo_repository_name=Jalview Git JAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/ LANG=en_GB.UTF-8 bamboo_buildFailed=false bamboo_repository_46498157_name=Jalview Git bamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk bamboo_repository_46498157_branch_name=bug/JAL-4477_unmapped_filename_characters bamboo_planRepository_branch=bug/JAL-4477_unmapped_filename_characters bamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609 bamboo_capability_system_git_executable=/bin/git bamboo_repository_git_username= bamboo_planRepository_1_previousRevision=d7c3dc79c05b6bcfb728e455ed8148650d00d551 bamboo_planRepository_branchDisplayName=bug/JAL-4477_unmapped_filename_characters bamboo_planRepository_1_type=gitv2 bamboo_planRepository_branchName=bug/JAL-4477_unmapped_filename_characters _=/usr/bin/java bamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11 bamboo_capability_system_builderivy_Ivy=/usr bamboo_plan_storageTag=plan-46301913 bamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle bamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache bamboo_planRepository_1_username= bamboo_planRepository_type=gitv2 USER=bamboo bamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache bamboo_repository_git_repositoryUrl=http://source.jalview.org/git/jalview.git bamboo_capability_system_builder_ant_Ant=/usr/share/ant bamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven bamboo_tmp_directory=/srv/bamboo/bamboo-home/temp bamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1 bamboo_planKey=JB-GDB637 bamboo_planRepository_1_repositoryUrl=http://source.jalview.org/git/jalview.git bamboo_planRepository_username= HOME=/home/bamboo bamboo_planRepository_1_branchName=bug/JAL-4477_unmapped_filename_characters PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin |
11-Nov-2024 17:27:02 | 444 |
11-Nov-2024 17:27:03 | |
11-Nov-2024 17:27:03 | > Configure project : |
11-Nov-2024 17:27:03 | Using properties from file './utils/channels/default/channel_gradle.properties' |
11-Nov-2024 17:27:03 | JALVIEW_VERSION is set to '2.11.4.2' |
11-Nov-2024 17:27:03 | HEADLESS BUILD |
11-Nov-2024 17:27:03 | J2S ENABLED |
11-Nov-2024 17:27:03 | Using a LOCAL profile. |
11-Nov-2024 17:27:03 | eclipseDir exists |
11-Nov-2024 17:27:03 | |
11-Nov-2024 17:27:03 | > Task :clean |
11-Nov-2024 17:27:03 | > Task :cleanClover |
11-Nov-2024 17:27:03 | > Task :cleanTest UP-TO-DATE |
11-Nov-2024 17:27:05 | |
11-Nov-2024 17:27:05 | > Task :cloverInstrJava |
11-Nov-2024 17:27:05 | Clover: About to instrument 1103 files |
11-Nov-2024 17:27:05 | OpenClover Version 4.4.1, built on October 11 2019 (build-1020) |
11-Nov-2024 17:27:05 | Creating new database at '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/clover/clover.db'. |
11-Nov-2024 17:27:05 | Processing files at 1.9 source level. |
11-Nov-2024 17:27:08 | WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body? |
11-Nov-2024 17:27:08 | WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body? |
11-Nov-2024 17:27:08 | WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body? |
11-Nov-2024 17:27:08 | WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body? |
11-Nov-2024 17:27:08 | WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body? |
11-Nov-2024 17:27:08 | WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body? |
11-Nov-2024 17:27:08 | WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body? |
11-Nov-2024 17:27:15 | Clover all over. Instrumented 1103 files (112 packages). |
11-Nov-2024 17:27:18 | |
11-Nov-2024 17:27:18 | > Task :cloverInstrTests |
11-Nov-2024 17:27:18 | Clover: About to instrument test files |
11-Nov-2024 17:27:18 | OpenClover Version 4.4.1, built on October 11 2019 (build-1020) |
11-Nov-2024 17:27:18 | Updating existing database at '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/clover/clover.db'. |
11-Nov-2024 17:27:18 | Processing files at 1.9 source level. |
11-Nov-2024 17:27:20 | Clover all over. Instrumented 291 files (52 packages). |
11-Nov-2024 17:27:20 | 1595 test methods detected. |
11-Nov-2024 17:27:20 | |
11-Nov-2024 17:27:20 | > Task :cloverInstr |
11-Nov-2024 17:27:22 | |
11-Nov-2024 17:27:22 | > Task :compileCloverJava |
11-Nov-2024 17:27:22 | Execution optimizations have been disabled for task ':compileCloverJava' to ensure correctness due to the following reasons: |
11-Nov-2024 17:27:22 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/clover/clover-classes'. Reason: Task ':cloverInstrJava' uses this output of task ':compileCloverJava' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
11-Nov-2024 17:27:22 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/clover/clover-classes'. Reason: Task ':cloverInstrTests' uses this output of task ':compileCloverJava' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
11-Nov-2024 17:27:22 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/clover/clover-instr'. Reason: Task ':compileCloverJava' uses this output of task ':cloverInstrJava' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
11-Nov-2024 17:27:22 | Setting target compatibility to 11 |
11-Nov-2024 17:27:36 | Note: Some input files use or override a deprecated API. |
11-Nov-2024 17:27:36 | Note: Recompile with -Xlint:deprecation for details. |
11-Nov-2024 17:27:36 | Note: Some input files use unchecked or unsafe operations. |
11-Nov-2024 17:27:36 | Note: Recompile with -Xlint:unchecked for details. |
11-Nov-2024 17:27:40 | |
11-Nov-2024 17:27:40 | > Task :processCloverResources NO-SOURCE |
11-Nov-2024 17:27:40 | > Task :cloverClasses |
11-Nov-2024 17:27:40 | > Task :copyHelp |
11-Nov-2024 17:27:41 | > Task :buildIndices |
11-Nov-2024 17:27:41 | > Task :copyResources |
11-Nov-2024 17:27:41 | > Task :copyChannelResources |
11-Nov-2024 17:27:41 | |
11-Nov-2024 17:27:41 | > Task :createBuildProperties |
11-Nov-2024 17:27:41 | Execution optimizations have been disabled for task ':createBuildProperties' to ensure correctness due to the following reasons: |
11-Nov-2024 17:27:41 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/resources/resources_build'. Reason: Task ':createBuildProperties' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
11-Nov-2024 17:27:41 | |
11-Nov-2024 17:27:41 | > Task :buildResources |
11-Nov-2024 17:27:41 | > Task :copyDocs |
11-Nov-2024 17:27:41 | |
11-Nov-2024 17:27:41 | > Task :convertMdFiles |
11-Nov-2024 17:27:41 | Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/resources/doc_build/doc/README-DMG_creation.html |
11-Nov-2024 17:27:41 | Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/resources/doc_build/doc/releaseprocess.html |
11-Nov-2024 17:27:41 | Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/resources/doc_build/doc/README-DMG_background_image_creation.html |
11-Nov-2024 17:27:41 | Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/resources/doc_build/doc/building.html |
11-Nov-2024 17:27:41 | Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/resources/doc_build/doc/jalview-projects.html |
11-Nov-2024 17:27:41 | |
11-Nov-2024 17:27:41 | > Task :releasesTemplates |
11-Nov-2024 17:27:41 | Execution optimizations have been disabled for task ':releasesTemplates' to ensure correctness due to the following reasons: |
11-Nov-2024 17:27:41 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/resources/help_build/help/html/releases.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
11-Nov-2024 17:27:41 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/resources/help_build/help/html/whatsNew.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
11-Nov-2024 17:27:41 | Stripping rc/test/etc for TEST |
11-Nov-2024 17:27:41 | Looking in /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/help/markdown/whatsnew/whatsnew-TEST.md |
11-Nov-2024 17:27:41 | |
11-Nov-2024 17:27:41 | > Task :prepare |
11-Nov-2024 17:27:43 | |
11-Nov-2024 17:27:43 | > Task :compileJava |
11-Nov-2024 17:27:43 | Setting target compatibility to 11 |
11-Nov-2024 17:27:49 | Note: Some input files use or override a deprecated API. |
11-Nov-2024 17:27:49 | Note: Recompile with -Xlint:deprecation for details. |
11-Nov-2024 17:27:49 | Note: Some input files use unchecked or unsafe operations. |
11-Nov-2024 17:27:49 | Note: Recompile with -Xlint:unchecked for details. |
11-Nov-2024 17:27:51 | |
11-Nov-2024 17:27:51 | > Task :compileTestJava |
11-Nov-2024 17:27:51 | Execution optimizations have been disabled for task ':compileTestJava' to ensure correctness due to the following reasons: |
11-Nov-2024 17:27:51 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/clover/clover-classes'. Reason: Task ':compileTestJava' uses this output of task ':compileCloverJava' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
11-Nov-2024 17:27:51 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/clover/clover-test-instr'. Reason: Task ':compileTestJava' uses this output of task ':cloverInstrTests' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
11-Nov-2024 17:27:51 | Setting target compatibility to 11 |
11-Nov-2024 17:27:56 | Note: Some input files use or override a deprecated API. |
11-Nov-2024 17:27:56 | Note: Recompile with -Xlint:deprecation for details. |
11-Nov-2024 17:27:56 | Note: Some input files use unchecked or unsafe operations. |
11-Nov-2024 17:27:56 | Note: Recompile with -Xlint:unchecked for details. |
11-Nov-2024 17:27:57 | |
11-Nov-2024 17:27:57 | > Task :processTestResources |
11-Nov-2024 17:27:57 | Execution optimizations have been disabled for task ':processTestResources' to ensure correctness due to the following reasons: |
11-Nov-2024 17:27:57 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/resources/doc_build'. Reason: Task ':processTestResources' uses this output of task ':copyDocs' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
11-Nov-2024 17:27:57 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/resources/help_build'. Reason: Task ':processTestResources' uses this output of task ':buildIndices' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
11-Nov-2024 17:27:57 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/resources/help_build'. Reason: Task ':processTestResources' uses this output of task ':copyHelp' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
11-Nov-2024 17:27:57 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/resources/help_build'. Reason: Task ':processTestResources' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
11-Nov-2024 17:27:57 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/resources/resources_build'. Reason: Task ':processTestResources' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
11-Nov-2024 17:27:57 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/resources/resources_build'. Reason: Task ':processTestResources' uses this output of task ':copyResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
11-Nov-2024 17:27:57 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/resources/resources_build'. Reason: Task ':processTestResources' uses this output of task ':createBuildProperties' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
11-Nov-2024 17:27:57 | |
11-Nov-2024 17:27:57 | > Task :testClasses |
11-Nov-2024 17:27:59 | |
11-Nov-2024 17:27:59 | > Task :testTask0 |
11-Nov-2024 17:27:59 | Running tests WITH clover |
11-Nov-2024 17:28:02 | WARNING: An illegal reflective access operation has occurred |
11-Nov-2024 17:28:02 | WARNING: Illegal reflective access by jalview.gui.Desktop (file:/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/clover/clover-classes/) to field sun.awt.X11.XToolkit.awtAppClassName |
11-Nov-2024 17:28:02 | WARNING: Please consider reporting this to the maintainers of jalview.gui.Desktop |
11-Nov-2024 17:28:02 | WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations |
11-Nov-2024 17:28:02 | WARNING: All illegal access operations will be denied in a future release |
11-Nov-2024 17:28:12 | |
11-Nov-2024 17:28:12 | jalview.bin.HiDPISettingTest1.setUp FAILED |
11-Nov-2024 17:28:12 | java.lang.NullPointerException: Null action |
11-Nov-2024 17:28:12 | at java.base/java.security.AccessController.doPrivileged(Native Method) |
11-Nov-2024 17:28:12 | at java.desktop/javax.swing.plaf.basic.BasicLookAndFeel.uninitialize(BasicLookAndFeel.java:203) |
11-Nov-2024 17:28:12 | at com.formdev.flatlaf.FlatLaf.uninitialize(FlatLaf.java:371) |
11-Nov-2024 17:28:12 | at java.desktop/javax.swing.UIManager.setLookAndFeel(UIManager.java:580) |
11-Nov-2024 17:28:12 | at java.desktop/javax.swing.UIManager.setLookAndFeel(UIManager.java:633) |
11-Nov-2024 17:28:12 | at jalview.bin.Jalview.setFlatLookAndFeel(Jalview.java:1507) |
11-Nov-2024 17:28:12 | at jalview.bin.Jalview.setLinuxLookAndFeel(Jalview.java:1601) |
11-Nov-2024 17:28:12 | at jalview.bin.Jalview.setLookAndFeel(Jalview.java:1376) |
11-Nov-2024 17:28:12 | at jalview.bin.Jalview.doMain(Jalview.java:652) |
11-Nov-2024 17:28:12 | at jalview.bin.Jalview.main(Jalview.java:259) |
11-Nov-2024 17:28:12 | at jalview.bin.HiDPISettingTest1.setUp(HiDPISettingTest1.java:63) |
11-Nov-2024 17:31:48 | |
11-Nov-2024 17:31:48 | 1736 tests completed, 1 failed, 1 skipped |
11-Nov-2024 17:31:48 | There were failing tests. See the report at: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/reports/tests/testTask0/index.html |
11-Nov-2024 17:31:50 | |
11-Nov-2024 17:31:50 | > Task :testTask1 |
11-Nov-2024 17:31:50 | Running tests WITH clover |
11-Nov-2024 17:31:51 | WARNING: An illegal reflective access operation has occurred |
11-Nov-2024 17:31:51 | WARNING: Illegal reflective access by jalview.gui.Desktop (file:/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/clover/clover-classes/) to field sun.awt.X11.XToolkit.awtAppClassName |
11-Nov-2024 17:31:51 | WARNING: Please consider reporting this to the maintainers of jalview.gui.Desktop |
11-Nov-2024 17:31:51 | WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations |
11-Nov-2024 17:31:51 | WARNING: All illegal access operations will be denied in a future release |
11-Nov-2024 17:33:26 | |
11-Nov-2024 17:33:26 | > Task :testTask2 |
11-Nov-2024 17:33:26 | Running tests WITH clover |
11-Nov-2024 17:33:29 | |
11-Nov-2024 17:33:29 | > Task :testTask3 |
11-Nov-2024 17:33:29 | Running tests WITH clover |
11-Nov-2024 17:33:31 | WARNING: An illegal reflective access operation has occurred |
11-Nov-2024 17:33:31 | WARNING: Illegal reflective access by jalview.gui.Desktop (file:/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/clover/clover-classes/) to field sun.awt.X11.XToolkit.awtAppClassName |
11-Nov-2024 17:33:31 | WARNING: Please consider reporting this to the maintainers of jalview.gui.Desktop |
11-Nov-2024 17:33:31 | WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations |
11-Nov-2024 17:33:31 | WARNING: All illegal access operations will be denied in a future release |
11-Nov-2024 17:34:16 | |
11-Nov-2024 17:34:16 | > Task :test NO-SOURCE |
11-Nov-2024 17:34:16 | ┌──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┐ |
11-Nov-2024 17:34:16 | │jalview:testTask0 results: FAILURE (1736 tests, 1734 successes, 1 failures, 1 skipped) in 3 minutes, 50.479 seconds │ |
11-Nov-2024 17:34:16 | │Report file: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/reports/tests/testTask0/index.html│ |
11-Nov-2024 17:34:16 | ├──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┤ |
11-Nov-2024 17:34:16 | │jalview:testTask1 results: SUCCESS (49 tests, 49 successes, 0 failures, 0 skipped) in 1 minutes, 35.830 seconds │ |
11-Nov-2024 17:34:16 | │Report file: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/reports/tests/testTask1/index.html│ |
11-Nov-2024 17:34:16 | |
11-Nov-2024 17:34:16 | FAILURE: Build failed with an exception. |
11-Nov-2024 17:34:16 | |
11-Nov-2024 17:34:16 | * Where: |
11-Nov-2024 17:34:16 | Build file '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build.gradle' line: 1966 |
11-Nov-2024 17:34:16 | |
11-Nov-2024 17:34:16 | * What went wrong: |
11-Nov-2024 17:34:16 | Failed tests! |
11-Nov-2024 17:34:16 | |
11-Nov-2024 17:34:16 | * Try: |
11-Nov-2024 17:34:16 | > Run with --stacktrace option to get the stack trace. |
11-Nov-2024 17:34:16 | > Run with --info or --debug option to get more log output. |
11-Nov-2024 17:34:16 | > Run with --scan to get full insights. |
11-Nov-2024 17:34:16 | |
11-Nov-2024 17:34:16 | * Get more help at https://help.gradle.org |
11-Nov-2024 17:34:16 | |
11-Nov-2024 17:34:16 | BUILD FAILED in 7m 14s |
11-Nov-2024 17:34:16 | ├──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┤ |
11-Nov-2024 17:34:16 | │jalview:testTask2 results: SUCCESS (1 tests, 1 successes, 0 failures, 0 skipped) in 3.341 seconds │ |
11-Nov-2024 17:34:16 | │Report file: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/reports/tests/testTask2/index.html│ |
11-Nov-2024 17:34:16 | ├──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┤ |
11-Nov-2024 17:34:16 | │jalview:testTask3 results: SUCCESS (25 tests, 25 successes, 0 failures, 0 skipped) in 48.991 seconds │ |
11-Nov-2024 17:34:16 | │Report file: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/reports/tests/testTask3/index.html│ |
11-Nov-2024 17:34:16 | ├──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┤ |
11-Nov-2024 17:34:16 | │OVERALL: results: FAILURE (1811 tests, 1809 successes, 1 failures, 1 skipped) in 4 minutes, 138.641 seconds │ |
11-Nov-2024 17:34:16 | └──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┘ |
11-Nov-2024 17:34:16 | |
11-Nov-2024 17:34:16 | Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0. |
11-Nov-2024 17:34:16 | |
11-Nov-2024 17:34:16 | You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins. |
11-Nov-2024 17:34:16 | |
11-Nov-2024 17:34:16 | See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings |
11-Nov-2024 17:34:16 | |
11-Nov-2024 17:34:16 | Execution optimizations have been disabled for 5 invalid unit(s) of work during this build to ensure correctness. |
11-Nov-2024 17:34:16 | Please consult deprecation warnings for more details. |
11-Nov-2024 17:34:16 | 21 actionable tasks: 20 executed, 1 up-to-date |
11-Nov-2024 17:34:17 | |
11-Nov-2024 17:34:17 | Failing task since return code of [/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test] was 1 while expected 0 |
11-Nov-2024 17:34:17 | Finished task 'Run tests with openclover under gradle' with result: Failed |
11-Nov-2024 17:34:17 | Starting task 'Clover Report' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask' |
11-Nov-2024 17:34:17 | Bamboo Artifactory Plugin version: 2.6.2 |
11-Nov-2024 17:34:17 | Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build - bug-JAL-4477_unmapped_filename_characters - Clover and Tests #6 (JB-GDB637-JOB1-6)' ... running command line: /home/bamboo/buildtools/x11-gradle/bin/gradle --no-daemon -Pclover=true -PJAVA_VERSION=11 cloverReport ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=bug/JAL-4477_unmapped_filename_characters bamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr CATALINA_PID=/home/bamboo/latest/work/bamboo.pid bamboo_planRepository_1_branchDisplayName=bug/JAL-4477_unmapped_filename_characters bamboo_repository_revision_number=a8875a08d16716161d51d26824b551ddc79fca9b bamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDB637-JOB1-6 JAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048 bamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1 bamboo_planRepository_1_name=Jalview Git bamboo_buildKey=JB-GDB637-JOB1 bamboo_repository_46498157_git_repositoryUrl=http://source.jalview.org/git/jalview.git bamboo_shortPlanName=bug-JAL-4477_unmapped_filename_characters bamboo_repository_46498157_revision_number=a8875a08d16716161d51d26824b551ddc79fca9b bamboo_planRepository_name=Jalview Git LOGNAME=bamboo bamboo_buildNumber=6 PWD=/ bamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse bamboo_shortJobName=Clover and Tests bamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDB637-JOB1-6 bamboo_planRepository_repositoryUrl=http://source.jalview.org/git/jalview.git SHELL=/bin/bash bamboo_agentId=196609 bamboo_planName=Jalview Builds - Gradle Develop Build - bug-JAL-4477_unmapped_filename_characters bamboo_shortPlanKey=GDB637 bamboo_repository_46498157_git_branch=bug/JAL-4477_unmapped_filename_characters bamboo_shortJobKey=JOB1 bamboo_repository_46498157_previous_revision_number=d7c3dc79c05b6bcfb728e455ed8148650d00d551 bamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk bamboo_planRepository_revision=a8875a08d16716161d51d26824b551ddc79fca9b bamboo_buildTimeStamp=2024-11-11T17:27:01.674Z bamboo_repository_previous_revision_number=d7c3dc79c05b6bcfb728e455ed8148650d00d551 bamboo_planRepository_previousRevision=d7c3dc79c05b6bcfb728e455ed8148650d00d551 bamboo_repository_git_branch=bug/JAL-4477_unmapped_filename_characters bamboo_buildResultKey=JB-GDB637-JOB1-6 bamboo_repository_branch_name=bug/JAL-4477_unmapped_filename_characters bamboo_buildPlanName=Jalview Builds - Gradle Develop Build - bug-JAL-4477_unmapped_filename_characters - Clover and Tests bamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11 bamboo_repository_46498157_git_username= bamboo_planRepository_1_revision=a8875a08d16716161d51d26824b551ddc79fca9b SHLVL=1 bamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant bamboo_repository_name=Jalview Git bamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_2=/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test JAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/ LANG=en_GB.UTF-8 bamboo_buildFailed=true bamboo_repository_46498157_name=Jalview Git bamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk bamboo_repository_46498157_branch_name=bug/JAL-4477_unmapped_filename_characters bamboo_planRepository_branch=bug/JAL-4477_unmapped_filename_characters bamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609 bamboo_jobFailed=true bamboo_capability_system_git_executable=/bin/git bamboo_repository_git_username= bamboo_planRepository_1_previousRevision=d7c3dc79c05b6bcfb728e455ed8148650d00d551 bamboo_planRepository_branchDisplayName=bug/JAL-4477_unmapped_filename_characters bamboo_planRepository_1_type=gitv2 bamboo_planRepository_branchName=bug/JAL-4477_unmapped_filename_characters _=/usr/bin/java bamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11 bamboo_capability_system_builderivy_Ivy=/usr bamboo_plan_storageTag=plan-46301913 bamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle bamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache bamboo_planRepository_1_username= bamboo_planRepository_type=gitv2 USER=bamboo bamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache bamboo_repository_git_repositoryUrl=http://source.jalview.org/git/jalview.git bamboo_capability_system_builder_ant_Ant=/usr/share/ant bamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven bamboo_tmp_directory=/srv/bamboo/bamboo-home/temp bamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1 bamboo_planKey=JB-GDB637 bamboo_planRepository_1_repositoryUrl=http://source.jalview.org/git/jalview.git bamboo_planRepository_username= HOME=/home/bamboo bamboo_planRepository_1_branchName=bug/JAL-4477_unmapped_filename_characters PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin |
11-Nov-2024 17:34:17 | 444 |
11-Nov-2024 17:34:29 | |
11-Nov-2024 17:34:29 | > Configure project : |
11-Nov-2024 17:34:29 | Using properties from file './utils/channels/default/channel_gradle.properties' |
11-Nov-2024 17:34:29 | JALVIEW_VERSION is set to '2.11.4.2' |
11-Nov-2024 17:34:29 | HEADLESS BUILD |
11-Nov-2024 17:34:29 | J2S ENABLED |
11-Nov-2024 17:34:30 | Using a LOCAL profile. |
11-Nov-2024 17:34:31 | eclipseDir exists |
11-Nov-2024 17:34:33 | |
11-Nov-2024 17:34:33 | > Task :cloverHtmlReport |
11-Nov-2024 17:34:33 | OpenClover Version 4.4.1, built on October 11 2019 (build-1020) |
11-Nov-2024 17:34:35 | Writing HTML report to '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/reports/clover' |
11-Nov-2024 17:35:14 | Done. Processed 116 packages in 39041ms (336ms per package). |
11-Nov-2024 17:35:20 | |
11-Nov-2024 17:35:20 | > Task :cloverXmlReport |
11-Nov-2024 17:35:20 | OpenClover Version 4.4.1, built on October 11 2019 (build-1020) |
11-Nov-2024 17:35:21 | Writing report to '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/reports/clover/clover.xml' |
11-Nov-2024 17:35:21 | |
11-Nov-2024 17:35:21 | > Task :cloverReport |
11-Nov-2024 17:35:21 | |
11-Nov-2024 17:35:21 | Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0. |
11-Nov-2024 17:35:21 | |
11-Nov-2024 17:35:21 | You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins. |
11-Nov-2024 17:35:21 | |
11-Nov-2024 17:35:21 | See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings |
11-Nov-2024 17:35:21 | |
11-Nov-2024 17:35:21 | BUILD SUCCESSFUL in 1m 4s |
11-Nov-2024 17:35:21 | 2 actionable tasks: 2 executed |
11-Nov-2024 17:35:21 | Finished task 'Clover Report' with result: Success |
11-Nov-2024 17:35:21 | Starting task 'TestNG Parser' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.testng' |
11-Nov-2024 17:35:21 | Parsing test results under /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1... |
11-Nov-2024 17:35:21 | Failing task since 1 failing test cases were found. |
11-Nov-2024 17:35:21 | Finished task 'TestNG Parser' with result: Failed |
11-Nov-2024 17:35:21 | Running post build plugin 'NCover Results Collector' |
11-Nov-2024 17:35:21 | Running post build plugin 'Artifact Copier' |
11-Nov-2024 17:35:21 | Publishing an artifact: Clover Report (System) |
11-Nov-2024 17:35:23 | Finished publishing of artifact Job artifact: [Clover Report (System)], pattern: [**/*.*] anchored at: [build/reports/clover] in 1.426 s |
11-Nov-2024 17:35:23 | Publishing an artifact: TestNG report |
11-Nov-2024 17:35:23 | Unable to publish artifact [TestNG report]: the source directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/reports/tests/test does not exist. |
11-Nov-2024 17:35:23 | The artifact hasn't been successfully published after 1.284 ms |
11-Nov-2024 17:35:23 | Running post build plugin 'Artifactory Release Management Staging' |
11-Nov-2024 17:35:23 | Running post build plugin 'Artifactory Build Info Copier' |
11-Nov-2024 17:35:23 | Running post build plugin 'Artifactory Gradle Properties Info Copier' |
11-Nov-2024 17:35:23 | Running post build plugin 'npm Cache Cleanup' |
11-Nov-2024 17:35:23 | Running post build plugin 'Clover Results Collector' |
11-Nov-2024 17:35:23 | Running post build plugin 'Docker Container Cleanup' |
11-Nov-2024 17:35:23 | Finalising the build... |
11-Nov-2024 17:35:23 | Stopping timer. |
11-Nov-2024 17:35:23 | Build JB-GDB637-JOB1-6 completed. |
11-Nov-2024 17:35:23 | Running on server: post build plugin 'NCover Results Collector' |
11-Nov-2024 17:35:23 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
11-Nov-2024 17:35:23 | Running on server: post build plugin 'Clover Delta Calculator' |
11-Nov-2024 17:35:23 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
11-Nov-2024 17:35:23 | All post build plugins have finished |
11-Nov-2024 17:35:23 | Generating build results summary... |
11-Nov-2024 17:35:23 | Saving build results to disk... |
11-Nov-2024 17:35:23 | Logging substituted variables... |
11-Nov-2024 17:35:23 | Indexing build results... |
11-Nov-2024 17:35:23 | Finished building JB-GDB637-JOB1-6. |