Build #6

Build: #6 failed

Job: Clover and Tests failed

Stages & jobs

  1. Default Stage

Build log

The build generated 284 lines of output. Download or view full build log

11-Nov-2024 17:27:01 Build Jalview Builds - Gradle Develop Build - bug-JAL-4477_unmapped_filename_characters - Clover and Tests #6 (JB-GDB637-JOB1-6) started building on agent Default Agent
11-Nov-2024 17:27:01
11-Nov-2024 17:27:01 Build working directory is /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1
11-Nov-2024 17:27:01 Executing build Jalview Builds - Gradle Develop Build - bug-JAL-4477_unmapped_filename_characters - Clover and Tests #6 (JB-GDB637-JOB1-6)
11-Nov-2024 17:27:01 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout'
11-Nov-2024 17:27:01 Checking out into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1
11-Nov-2024 17:27:01 Updating source code to revision: a8875a08d16716161d51d26824b551ddc79fca9b
11-Nov-2024 17:27:01 Fetching 'refs/heads/bug/JAL-4477_unmapped_filename_characters' from 'http://source.jalview.org/git/jalview.git'.
11-Nov-2024 17:27:01 Checking out revision a8875a08d16716161d51d26824b551ddc79fca9b.
11-Nov-2024 17:27:02 From file:///srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache/2597b807d50ab756c763be1d374b09c84289a164
11-Nov-2024 17:27:02    d7c3dc7..a8875a0  bug/JAL-4477_unmapped_filename_characters -> origin/bug/JAL-4477_unmapped_filename_characters
11-Nov-2024 17:27:02    67eb1f5..416aad3  develop    -> origin/develop
11-Nov-2024 17:27:02 Your branch is behind 'origin/bug/JAL-4477_unmapped_filename_characters' by 1 commit, and can be fast-forwarded.
11-Nov-2024 17:27:02   (use "git pull" to update your local branch)
11-Nov-2024 17:27:02 Already on 'bug/JAL-4477_unmapped_filename_characters'
11-Nov-2024 17:27:02 HEAD is now at a8875a0 JAL-4477 missing import ?  not sure how I missed this !
11-Nov-2024 17:27:02 Updated source code to revision: a8875a08d16716161d51d26824b551ddc79fca9b
11-Nov-2024 17:27:02 Finished task 'Checkout Default Repository' with result: Success
11-Nov-2024 17:27:02 Running pre-build action: VCS Version Collector
11-Nov-2024 17:27:02 Running pre-build action: Artifactory Release Staging
11-Nov-2024 17:27:02 Starting task 'Run tests with openclover under gradle' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask'
11-Nov-2024 17:27:02 Bamboo Artifactory Plugin version: 2.6.2
11-Nov-2024 17:27:02
Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build - bug-JAL-4477_unmapped_filename_characters - Clover and Tests #6 (JB-GDB637-JOB1-6)'
... running command line:
/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test
... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1
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11-Nov-2024 17:27:02 444
11-Nov-2024 17:27:03
11-Nov-2024 17:27:03 > Configure project :
11-Nov-2024 17:27:03 Using properties from file './utils/channels/default/channel_gradle.properties'
11-Nov-2024 17:27:03 JALVIEW_VERSION is set to '2.11.4.2'
11-Nov-2024 17:27:03 HEADLESS BUILD
11-Nov-2024 17:27:03 J2S ENABLED
11-Nov-2024 17:27:03 Using a LOCAL profile.
11-Nov-2024 17:27:03 eclipseDir exists
11-Nov-2024 17:27:03
11-Nov-2024 17:27:03 > Task :clean
11-Nov-2024 17:27:03 > Task :cleanClover
11-Nov-2024 17:27:03 > Task :cleanTest UP-TO-DATE
11-Nov-2024 17:27:05
11-Nov-2024 17:27:05 > Task :cloverInstrJava
11-Nov-2024 17:27:05 Clover: About to instrument 1103 files
11-Nov-2024 17:27:05 OpenClover Version 4.4.1, built on October 11 2019 (build-1020)
11-Nov-2024 17:27:05 Creating new database at '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/clover/clover.db'.
11-Nov-2024 17:27:05 Processing files at 1.9 source level.
11-Nov-2024 17:27:08 WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
11-Nov-2024 17:27:08 WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
11-Nov-2024 17:27:08 WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
11-Nov-2024 17:27:08 WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
11-Nov-2024 17:27:08 WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
11-Nov-2024 17:27:08 WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
11-Nov-2024 17:27:08 WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body?
11-Nov-2024 17:27:15 Clover all over. Instrumented 1103 files (112 packages).
11-Nov-2024 17:27:18
11-Nov-2024 17:27:18 > Task :cloverInstrTests
11-Nov-2024 17:27:18 Clover: About to instrument test files
11-Nov-2024 17:27:18 OpenClover Version 4.4.1, built on October 11 2019 (build-1020)
11-Nov-2024 17:27:18 Updating existing database at '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/clover/clover.db'.
11-Nov-2024 17:27:18 Processing files at 1.9 source level.
11-Nov-2024 17:27:20 Clover all over. Instrumented 291 files (52 packages).
11-Nov-2024 17:27:20 1595 test methods detected.
11-Nov-2024 17:27:20
11-Nov-2024 17:27:20 > Task :cloverInstr
11-Nov-2024 17:27:22
11-Nov-2024 17:27:22 > Task :compileCloverJava
11-Nov-2024 17:27:22 Execution optimizations have been disabled for task ':compileCloverJava' to ensure correctness due to the following reasons:
11-Nov-2024 17:27:22   - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/clover/clover-classes'. Reason: Task ':cloverInstrJava' uses this output of task ':compileCloverJava' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
11-Nov-2024 17:27:22   - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/clover/clover-classes'. Reason: Task ':cloverInstrTests' uses this output of task ':compileCloverJava' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
11-Nov-2024 17:27:22   - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/clover/clover-instr'. Reason: Task ':compileCloverJava' uses this output of task ':cloverInstrJava' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
11-Nov-2024 17:27:22 Setting target compatibility to 11
11-Nov-2024 17:27:36 Note: Some input files use or override a deprecated API.
11-Nov-2024 17:27:36 Note: Recompile with -Xlint:deprecation for details.
11-Nov-2024 17:27:36 Note: Some input files use unchecked or unsafe operations.
11-Nov-2024 17:27:36 Note: Recompile with -Xlint:unchecked for details.
11-Nov-2024 17:27:40
11-Nov-2024 17:27:40 > Task :processCloverResources NO-SOURCE
11-Nov-2024 17:27:40 > Task :cloverClasses
11-Nov-2024 17:27:40 > Task :copyHelp
11-Nov-2024 17:27:41 > Task :buildIndices
11-Nov-2024 17:27:41 > Task :copyResources
11-Nov-2024 17:27:41 > Task :copyChannelResources
11-Nov-2024 17:27:41
11-Nov-2024 17:27:41 > Task :createBuildProperties
11-Nov-2024 17:27:41 Execution optimizations have been disabled for task ':createBuildProperties' to ensure correctness due to the following reasons:
11-Nov-2024 17:27:41   - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/resources/resources_build'. Reason: Task ':createBuildProperties' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
11-Nov-2024 17:27:41
11-Nov-2024 17:27:41 > Task :buildResources
11-Nov-2024 17:27:41 > Task :copyDocs
11-Nov-2024 17:27:41
11-Nov-2024 17:27:41 > Task :convertMdFiles
11-Nov-2024 17:27:41 Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/resources/doc_build/doc/README-DMG_creation.html
11-Nov-2024 17:27:41 Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/resources/doc_build/doc/releaseprocess.html
11-Nov-2024 17:27:41 Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/resources/doc_build/doc/README-DMG_background_image_creation.html
11-Nov-2024 17:27:41 Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/resources/doc_build/doc/building.html
11-Nov-2024 17:27:41 Creating /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/resources/doc_build/doc/jalview-projects.html
11-Nov-2024 17:27:41
11-Nov-2024 17:27:41 > Task :releasesTemplates
11-Nov-2024 17:27:41 Execution optimizations have been disabled for task ':releasesTemplates' to ensure correctness due to the following reasons:
11-Nov-2024 17:27:41   - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/resources/help_build/help/html/releases.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
11-Nov-2024 17:27:41   - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/resources/help_build/help/html/whatsNew.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
11-Nov-2024 17:27:41 Stripping rc/test/etc for TEST
11-Nov-2024 17:27:41 Looking in /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/help/markdown/whatsnew/whatsnew-TEST.md
11-Nov-2024 17:27:41
11-Nov-2024 17:27:41 > Task :prepare
11-Nov-2024 17:27:43
11-Nov-2024 17:27:43 > Task :compileJava
11-Nov-2024 17:27:43 Setting target compatibility to 11
11-Nov-2024 17:27:49 Note: Some input files use or override a deprecated API.
11-Nov-2024 17:27:49 Note: Recompile with -Xlint:deprecation for details.
11-Nov-2024 17:27:49 Note: Some input files use unchecked or unsafe operations.
11-Nov-2024 17:27:49 Note: Recompile with -Xlint:unchecked for details.
11-Nov-2024 17:27:51
11-Nov-2024 17:27:51 > Task :compileTestJava
11-Nov-2024 17:27:51 Execution optimizations have been disabled for task ':compileTestJava' to ensure correctness due to the following reasons:
11-Nov-2024 17:27:51   - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/clover/clover-classes'. Reason: Task ':compileTestJava' uses this output of task ':compileCloverJava' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
11-Nov-2024 17:27:51   - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/clover/clover-test-instr'. Reason: Task ':compileTestJava' uses this output of task ':cloverInstrTests' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
11-Nov-2024 17:27:51 Setting target compatibility to 11
11-Nov-2024 17:27:56 Note: Some input files use or override a deprecated API.
11-Nov-2024 17:27:56 Note: Recompile with -Xlint:deprecation for details.
11-Nov-2024 17:27:56 Note: Some input files use unchecked or unsafe operations.
11-Nov-2024 17:27:56 Note: Recompile with -Xlint:unchecked for details.
11-Nov-2024 17:27:57
11-Nov-2024 17:27:57 > Task :processTestResources
11-Nov-2024 17:27:57 Execution optimizations have been disabled for task ':processTestResources' to ensure correctness due to the following reasons:
11-Nov-2024 17:27:57   - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/resources/doc_build'. Reason: Task ':processTestResources' uses this output of task ':copyDocs' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
11-Nov-2024 17:27:57   - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/resources/help_build'. Reason: Task ':processTestResources' uses this output of task ':buildIndices' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
11-Nov-2024 17:27:57   - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/resources/help_build'. Reason: Task ':processTestResources' uses this output of task ':copyHelp' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
11-Nov-2024 17:27:57   - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/resources/help_build'. Reason: Task ':processTestResources' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
11-Nov-2024 17:27:57   - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/resources/resources_build'. Reason: Task ':processTestResources' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
11-Nov-2024 17:27:57   - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/resources/resources_build'. Reason: Task ':processTestResources' uses this output of task ':copyResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
11-Nov-2024 17:27:57   - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/resources/resources_build'. Reason: Task ':processTestResources' uses this output of task ':createBuildProperties' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem.
11-Nov-2024 17:27:57
11-Nov-2024 17:27:57 > Task :testClasses
11-Nov-2024 17:27:59
11-Nov-2024 17:27:59 > Task :testTask0
11-Nov-2024 17:27:59 Running tests WITH clover
11-Nov-2024 17:28:02 WARNING: An illegal reflective access operation has occurred
11-Nov-2024 17:28:02 WARNING: Illegal reflective access by jalview.gui.Desktop (file:/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/clover/clover-classes/) to field sun.awt.X11.XToolkit.awtAppClassName
11-Nov-2024 17:28:02 WARNING: Please consider reporting this to the maintainers of jalview.gui.Desktop
11-Nov-2024 17:28:02 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
11-Nov-2024 17:28:02 WARNING: All illegal access operations will be denied in a future release
11-Nov-2024 17:28:12
11-Nov-2024 17:28:12 jalview.bin.HiDPISettingTest1.setUp FAILED
11-Nov-2024 17:28:12     java.lang.NullPointerException: Null action
11-Nov-2024 17:28:12         at java.base/java.security.AccessController.doPrivileged(Native Method)
11-Nov-2024 17:28:12         at java.desktop/javax.swing.plaf.basic.BasicLookAndFeel.uninitialize(BasicLookAndFeel.java:203)
11-Nov-2024 17:28:12         at com.formdev.flatlaf.FlatLaf.uninitialize(FlatLaf.java:371)
11-Nov-2024 17:28:12         at java.desktop/javax.swing.UIManager.setLookAndFeel(UIManager.java:580)
11-Nov-2024 17:28:12         at java.desktop/javax.swing.UIManager.setLookAndFeel(UIManager.java:633)
11-Nov-2024 17:28:12         at jalview.bin.Jalview.setFlatLookAndFeel(Jalview.java:1507)
11-Nov-2024 17:28:12         at jalview.bin.Jalview.setLinuxLookAndFeel(Jalview.java:1601)
11-Nov-2024 17:28:12         at jalview.bin.Jalview.setLookAndFeel(Jalview.java:1376)
11-Nov-2024 17:28:12         at jalview.bin.Jalview.doMain(Jalview.java:652)
11-Nov-2024 17:28:12         at jalview.bin.Jalview.main(Jalview.java:259)
11-Nov-2024 17:28:12         at jalview.bin.HiDPISettingTest1.setUp(HiDPISettingTest1.java:63)
11-Nov-2024 17:31:48
11-Nov-2024 17:31:48 1736 tests completed, 1 failed, 1 skipped
11-Nov-2024 17:31:48 There were failing tests. See the report at: file:///srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/reports/tests/testTask0/index.html
11-Nov-2024 17:31:50
11-Nov-2024 17:31:50 > Task :testTask1
11-Nov-2024 17:31:50 Running tests WITH clover
11-Nov-2024 17:31:51 WARNING: An illegal reflective access operation has occurred
11-Nov-2024 17:31:51 WARNING: Illegal reflective access by jalview.gui.Desktop (file:/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/clover/clover-classes/) to field sun.awt.X11.XToolkit.awtAppClassName
11-Nov-2024 17:31:51 WARNING: Please consider reporting this to the maintainers of jalview.gui.Desktop
11-Nov-2024 17:31:51 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
11-Nov-2024 17:31:51 WARNING: All illegal access operations will be denied in a future release
11-Nov-2024 17:33:26
11-Nov-2024 17:33:26 > Task :testTask2
11-Nov-2024 17:33:26 Running tests WITH clover
11-Nov-2024 17:33:29
11-Nov-2024 17:33:29 > Task :testTask3
11-Nov-2024 17:33:29 Running tests WITH clover
11-Nov-2024 17:33:31 WARNING: An illegal reflective access operation has occurred
11-Nov-2024 17:33:31 WARNING: Illegal reflective access by jalview.gui.Desktop (file:/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/clover/clover-classes/) to field sun.awt.X11.XToolkit.awtAppClassName
11-Nov-2024 17:33:31 WARNING: Please consider reporting this to the maintainers of jalview.gui.Desktop
11-Nov-2024 17:33:31 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
11-Nov-2024 17:33:31 WARNING: All illegal access operations will be denied in a future release
11-Nov-2024 17:34:16
11-Nov-2024 17:34:16 > Task :test NO-SOURCE
11-Nov-2024 17:34:16 ┌──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┐
11-Nov-2024 17:34:16 │jalview:testTask0 results: FAILURE (1736 tests, 1734 successes, 1 failures, 1 skipped) in 3 minutes, 50.479 seconds   │
11-Nov-2024 17:34:16 │Report file: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/reports/tests/testTask0/index.html│
11-Nov-2024 17:34:16 ├──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┤
11-Nov-2024 17:34:16 │jalview:testTask1 results: SUCCESS (49 tests, 49 successes, 0 failures, 0 skipped) in 1 minutes, 35.830 seconds       │
11-Nov-2024 17:34:16 │Report file: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/reports/tests/testTask1/index.html│
11-Nov-2024 17:34:16
11-Nov-2024 17:34:16 FAILURE: Build failed with an exception.
11-Nov-2024 17:34:16
11-Nov-2024 17:34:16 * Where:
11-Nov-2024 17:34:16 Build file '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build.gradle' line: 1966
11-Nov-2024 17:34:16
11-Nov-2024 17:34:16 * What went wrong:
11-Nov-2024 17:34:16 Failed tests!
11-Nov-2024 17:34:16
11-Nov-2024 17:34:16 * Try:
11-Nov-2024 17:34:16 > Run with --stacktrace option to get the stack trace.
11-Nov-2024 17:34:16 > Run with --info or --debug option to get more log output.
11-Nov-2024 17:34:16 > Run with --scan to get full insights.
11-Nov-2024 17:34:16
11-Nov-2024 17:34:16 * Get more help at https://help.gradle.org
11-Nov-2024 17:34:16
11-Nov-2024 17:34:16 BUILD FAILED in 7m 14s
11-Nov-2024 17:34:16 ├──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┤
11-Nov-2024 17:34:16 │jalview:testTask2 results: SUCCESS (1 tests, 1 successes, 0 failures, 0 skipped) in 3.341 seconds                     │
11-Nov-2024 17:34:16 │Report file: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/reports/tests/testTask2/index.html│
11-Nov-2024 17:34:16 ├──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┤
11-Nov-2024 17:34:16 │jalview:testTask3 results: SUCCESS (25 tests, 25 successes, 0 failures, 0 skipped) in 48.991 seconds                  │
11-Nov-2024 17:34:16 │Report file: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/reports/tests/testTask3/index.html│
11-Nov-2024 17:34:16 ├──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┤
11-Nov-2024 17:34:16 │OVERALL: results: FAILURE (1811 tests, 1809 successes, 1 failures, 1 skipped) in 4 minutes, 138.641 seconds           │
11-Nov-2024 17:34:16 └──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┘
11-Nov-2024 17:34:16
11-Nov-2024 17:34:16 Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0.
11-Nov-2024 17:34:16
11-Nov-2024 17:34:16 You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins.
11-Nov-2024 17:34:16
11-Nov-2024 17:34:16 See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings
11-Nov-2024 17:34:16
11-Nov-2024 17:34:16 Execution optimizations have been disabled for 5 invalid unit(s) of work during this build to ensure correctness.
11-Nov-2024 17:34:16 Please consult deprecation warnings for more details.
11-Nov-2024 17:34:16 21 actionable tasks: 20 executed, 1 up-to-date
11-Nov-2024 17:34:17
11-Nov-2024 17:34:17 Failing task since return code of [/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test] was 1 while expected 0
11-Nov-2024 17:34:17 Finished task 'Run tests with openclover under gradle' with result: Failed
11-Nov-2024 17:34:17 Starting task 'Clover Report' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask'
11-Nov-2024 17:34:17 Bamboo Artifactory Plugin version: 2.6.2
11-Nov-2024 17:34:17
Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build - bug-JAL-4477_unmapped_filename_characters - Clover and Tests #6 (JB-GDB637-JOB1-6)'
... running command line:
/home/bamboo/buildtools/x11-gradle/bin/gradle --no-daemon -Pclover=true -PJAVA_VERSION=11 cloverReport
... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1
... using extra environment variables:
bamboo_planRepository_1_branch=bug/JAL-4477_unmapped_filename_characters
bamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr
CATALINA_PID=/home/bamboo/latest/work/bamboo.pid
bamboo_planRepository_1_branchDisplayName=bug/JAL-4477_unmapped_filename_characters
bamboo_repository_revision_number=a8875a08d16716161d51d26824b551ddc79fca9b
bamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDB637-JOB1-6
JAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048
bamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1
bamboo_planRepository_1_name=Jalview Git
bamboo_buildKey=JB-GDB637-JOB1
bamboo_repository_46498157_git_repositoryUrl=http://source.jalview.org/git/jalview.git
bamboo_shortPlanName=bug-JAL-4477_unmapped_filename_characters
bamboo_repository_46498157_revision_number=a8875a08d16716161d51d26824b551ddc79fca9b
bamboo_planRepository_name=Jalview Git
LOGNAME=bamboo
bamboo_buildNumber=6
PWD=/
bamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse
bamboo_shortJobName=Clover and Tests
bamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDB637-JOB1-6
bamboo_planRepository_repositoryUrl=http://source.jalview.org/git/jalview.git
SHELL=/bin/bash
bamboo_agentId=196609
bamboo_planName=Jalview Builds - Gradle Develop Build - bug-JAL-4477_unmapped_filename_characters
bamboo_shortPlanKey=GDB637
bamboo_repository_46498157_git_branch=bug/JAL-4477_unmapped_filename_characters
bamboo_shortJobKey=JOB1
bamboo_repository_46498157_previous_revision_number=d7c3dc79c05b6bcfb728e455ed8148650d00d551
bamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk
bamboo_planRepository_revision=a8875a08d16716161d51d26824b551ddc79fca9b
bamboo_buildTimeStamp=2024-11-11T17:27:01.674Z
bamboo_repository_previous_revision_number=d7c3dc79c05b6bcfb728e455ed8148650d00d551
bamboo_planRepository_previousRevision=d7c3dc79c05b6bcfb728e455ed8148650d00d551
bamboo_repository_git_branch=bug/JAL-4477_unmapped_filename_characters
bamboo_buildResultKey=JB-GDB637-JOB1-6
bamboo_repository_branch_name=bug/JAL-4477_unmapped_filename_characters
bamboo_buildPlanName=Jalview Builds - Gradle Develop Build - bug-JAL-4477_unmapped_filename_characters - Clover and Tests
bamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11
bamboo_repository_46498157_git_username=
bamboo_planRepository_1_revision=a8875a08d16716161d51d26824b551ddc79fca9b
SHLVL=1
bamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant
bamboo_repository_name=Jalview Git
bamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_2=/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test
JAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/
LANG=en_GB.UTF-8
bamboo_buildFailed=true
bamboo_repository_46498157_name=Jalview Git
bamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk
bamboo_repository_46498157_branch_name=bug/JAL-4477_unmapped_filename_characters
bamboo_planRepository_branch=bug/JAL-4477_unmapped_filename_characters
bamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609
bamboo_jobFailed=true
bamboo_capability_system_git_executable=/bin/git
bamboo_repository_git_username=
bamboo_planRepository_1_previousRevision=d7c3dc79c05b6bcfb728e455ed8148650d00d551
bamboo_planRepository_branchDisplayName=bug/JAL-4477_unmapped_filename_characters
bamboo_planRepository_1_type=gitv2
bamboo_planRepository_branchName=bug/JAL-4477_unmapped_filename_characters
_=/usr/bin/java
bamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11
bamboo_capability_system_builderivy_Ivy=/usr
bamboo_plan_storageTag=plan-46301913
bamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle
bamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache
bamboo_planRepository_1_username=
bamboo_planRepository_type=gitv2
USER=bamboo
bamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache
bamboo_repository_git_repositoryUrl=http://source.jalview.org/git/jalview.git
bamboo_capability_system_builder_ant_Ant=/usr/share/ant
bamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven
bamboo_tmp_directory=/srv/bamboo/bamboo-home/temp
bamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1
bamboo_planKey=JB-GDB637
bamboo_planRepository_1_repositoryUrl=http://source.jalview.org/git/jalview.git
bamboo_planRepository_username=
HOME=/home/bamboo
bamboo_planRepository_1_branchName=bug/JAL-4477_unmapped_filename_characters
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin
11-Nov-2024 17:34:17 444
11-Nov-2024 17:34:29
11-Nov-2024 17:34:29 > Configure project :
11-Nov-2024 17:34:29 Using properties from file './utils/channels/default/channel_gradle.properties'
11-Nov-2024 17:34:29 JALVIEW_VERSION is set to '2.11.4.2'
11-Nov-2024 17:34:29 HEADLESS BUILD
11-Nov-2024 17:34:29 J2S ENABLED
11-Nov-2024 17:34:30 Using a LOCAL profile.
11-Nov-2024 17:34:31 eclipseDir exists
11-Nov-2024 17:34:33
11-Nov-2024 17:34:33 > Task :cloverHtmlReport
11-Nov-2024 17:34:33 OpenClover Version 4.4.1, built on October 11 2019 (build-1020)
11-Nov-2024 17:34:35 Writing HTML report to '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/reports/clover'
11-Nov-2024 17:35:14 Done. Processed 116 packages in 39041ms (336ms per package).
11-Nov-2024 17:35:20
11-Nov-2024 17:35:20 > Task :cloverXmlReport
11-Nov-2024 17:35:20 OpenClover Version 4.4.1, built on October 11 2019 (build-1020)
11-Nov-2024 17:35:21 Writing report to '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/reports/clover/clover.xml'
11-Nov-2024 17:35:21
11-Nov-2024 17:35:21 > Task :cloverReport
11-Nov-2024 17:35:21
11-Nov-2024 17:35:21 Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0.
11-Nov-2024 17:35:21
11-Nov-2024 17:35:21 You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins.
11-Nov-2024 17:35:21
11-Nov-2024 17:35:21 See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings
11-Nov-2024 17:35:21
11-Nov-2024 17:35:21 BUILD SUCCESSFUL in 1m 4s
11-Nov-2024 17:35:21 2 actionable tasks: 2 executed
11-Nov-2024 17:35:21 Finished task 'Clover Report' with result: Success
11-Nov-2024 17:35:21 Starting task 'TestNG Parser' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.testng'
11-Nov-2024 17:35:21 Parsing test results under /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1...
11-Nov-2024 17:35:21 Failing task since 1 failing test cases were found.
11-Nov-2024 17:35:21 Finished task 'TestNG Parser' with result: Failed
11-Nov-2024 17:35:21 Running post build plugin 'NCover Results Collector'
11-Nov-2024 17:35:21 Running post build plugin 'Artifact Copier'
11-Nov-2024 17:35:21 Publishing an artifact: Clover Report (System)
11-Nov-2024 17:35:23 Finished publishing of artifact Job artifact: [Clover Report (System)], pattern: [**/*.*] anchored at: [build/reports/clover] in 1.426 s
11-Nov-2024 17:35:23 Publishing an artifact: TestNG report
11-Nov-2024 17:35:23 Unable to publish artifact [TestNG report]: the source directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB637-JOB1/build/reports/tests/test does not exist.
11-Nov-2024 17:35:23 The artifact hasn't been successfully published after 1.284 ms
11-Nov-2024 17:35:23 Running post build plugin 'Artifactory Release Management Staging'
11-Nov-2024 17:35:23 Running post build plugin 'Artifactory Build Info Copier'
11-Nov-2024 17:35:23 Running post build plugin 'Artifactory Gradle Properties Info Copier'
11-Nov-2024 17:35:23 Running post build plugin 'npm Cache Cleanup'
11-Nov-2024 17:35:23 Running post build plugin 'Clover Results Collector'
11-Nov-2024 17:35:23 Running post build plugin 'Docker Container Cleanup'
11-Nov-2024 17:35:23 Finalising the build...
11-Nov-2024 17:35:23 Stopping timer.
11-Nov-2024 17:35:23 Build JB-GDB637-JOB1-6 completed.
11-Nov-2024 17:35:23 Running on server: post build plugin 'NCover Results Collector'
11-Nov-2024 17:35:23 Running on server: post build plugin 'Build Hanging Detection Configuration'
11-Nov-2024 17:35:23 Running on server: post build plugin 'Clover Delta Calculator'
11-Nov-2024 17:35:23 Running on server: post build plugin 'Maven Dependencies Postprocessor'
11-Nov-2024 17:35:23 All post build plugins have finished
11-Nov-2024 17:35:23 Generating build results summary...
11-Nov-2024 17:35:23 Saving build results to disk...
11-Nov-2024 17:35:23 Logging substituted variables...
11-Nov-2024 17:35:23 Indexing build results...
11-Nov-2024 17:35:23 Finished building JB-GDB637-JOB1-6.