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Coverage Report

  1. Project Clover database Mon Nov 11 2024 17:27:16 GMT
  2. Package jalview.ws.dbsources

File RfamFull.java

 

Coverage histogram

../../../img/srcFileCovDistChart3.png
52% of files have more coverage

Code metrics

0
7
7
1
79
38
7
1
1
7
1

Classes

Class Line # Actions
RfamFull 29 7 7
0.285714328.6%
 

Contributing tests

This file is covered by 1 test. .

Source view

1    /*
2    * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3    * Copyright (C) $$Year-Rel$$ The Jalview Authors
4    *
5    * This file is part of Jalview.
6    *
7    * Jalview is free software: you can redistribute it and/or
8    * modify it under the terms of the GNU General Public License
9    * as published by the Free Software Foundation, either version 3
10    * of the License, or (at your option) any later version.
11    *
12    * Jalview is distributed in the hope that it will be useful, but
13    * WITHOUT ANY WARRANTY; without even the implied warranty
14    * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15    * PURPOSE. See the GNU General Public License for more details.
16    *
17    * You should have received a copy of the GNU General Public License
18    * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19    * The Jalview Authors are detailed in the 'AUTHORS' file.
20    */
21    package jalview.ws.dbsources;
22   
23    /**
24    * Flyweight class specifying retrieval of Full family alignments from RFAM
25    *
26    * @author Lauren Michelle Lui
27    *
28    */
 
29    public class RfamFull extends Rfam
30    {
 
31  2 toggle public RfamFull()
32    {
33  2 super();
34    }
35   
 
36  2 toggle @Override
37    public String getURLSuffix()
38    {
39  2 return "/alignment/full" + GZIPPED;
40    }
41   
42    /*
43    * (non-Javadoc)
44    *
45    * @see jalview.ws.seqfetcher.DbSourceProxy#getDbName()
46    */
 
47  0 toggle @Override
48    public String getDbName()
49    {
50  0 return "RFAM (Full)";
51    }
52   
 
53  0 toggle @Override
54    public String getDbSource()
55    {
56  0 return getDbName(); // so we have unique DbSource string.
57    }
58   
 
59  0 toggle @Override
60    public String getTestQuery()
61    {
62    // Can be retrieved from http://rfam.janelia.org/cgi-bin/getdesc?acc=RF00014
63    // or
64    // http://rfam.sanger.ac.uk/family/alignment/download/format?alnType=full&nseLabels=0&format=stockholm&acc=RF00014
65  0 return "RF00014";
66    }
67   
 
68  0 toggle @Override
69    public String getDbVersion()
70    {
71  0 return null;
72    }
73   
 
74  0 toggle @Override
75    public int getTier()
76    {
77  0 return 0;
78    }
79    }