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package jalview.viewmodel; |
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import static org.testng.Assert.assertEquals; |
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import static org.testng.Assert.assertFalse; |
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import static org.testng.Assert.assertTrue; |
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import jalview.analysis.AlignmentGenerator; |
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import jalview.datamodel.Alignment; |
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import jalview.datamodel.AlignmentI; |
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import jalview.datamodel.ColumnSelection; |
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import jalview.datamodel.HiddenColumns; |
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import jalview.datamodel.Sequence; |
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import jalview.datamodel.SequenceCollectionI; |
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import jalview.datamodel.SequenceGroup; |
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import jalview.datamodel.SequenceI; |
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import java.util.Hashtable; |
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import org.testng.annotations.AfterClass; |
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import org.testng.annotations.BeforeClass; |
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import org.testng.annotations.BeforeMethod; |
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import org.testng.annotations.Test; |
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@Test(singleThreaded = true) |
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| 100% |
Uncovered Elements: 0 (526) |
Complexity: 28 |
Complexity Density: 0.06 |
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public class OverviewDimensionsHideHiddenTest |
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{ |
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AlignmentI al; |
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OverviewDimensionsHideHidden od; |
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int boxWidth; |
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int boxHeight; |
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int viewHeight; |
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int viewWidth; |
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int alheight; |
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int alwidth; |
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ViewportRanges vpranges; |
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Hashtable<SequenceI, SequenceCollectionI> hiddenRepSequences = new Hashtable<>(); |
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HiddenColumns hiddenCols = new HiddenColumns(); |
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| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
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1 |
@BeforeClass(alwaysRun = true)... |
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public void setUpAlignment() |
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{ |
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AlignmentGenerator gen = new AlignmentGenerator(false); |
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al = gen.generate(157, 525, 123, 5, 5); |
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} |
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| 100% |
Uncovered Elements: 0 (20) |
Complexity: 2 |
Complexity Density: 0.11 |
|
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@BeforeMethod(alwaysRun = true)... |
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public void setUp() |
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{ |
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if (!hiddenRepSequences.isEmpty()) |
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{ |
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al.getHiddenSequences().showAll(hiddenRepSequences); |
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} |
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ColumnSelection colsel = new ColumnSelection(); |
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hiddenCols.revealAllHiddenColumns(colsel); |
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vpranges = new ViewportRanges(al); |
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vpranges.setViewportStartAndHeight(0, 18); |
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vpranges.setViewportStartAndWidth(0, 63); |
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viewHeight = vpranges.getEndSeq() - vpranges.getStartSeq() + 1; |
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viewWidth = vpranges.getEndRes() - vpranges.getStartRes() + 1; |
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HiddenColumns hiddenCols = new HiddenColumns(); |
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od = new OverviewDimensionsHideHidden(vpranges, true); |
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od.setBoxPosition(al.getHiddenSequences(), hiddenCols); |
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mouseClick(od, 0, 0); |
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moveViewport(0, 0); |
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alheight = vpranges.getVisibleAlignmentHeight(); |
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alwidth = vpranges.getVisibleAlignmentWidth(); |
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boxWidth = Math.round( |
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(float) (vpranges.getEndRes() - vpranges.getStartRes() + 1) |
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* od.getWidth() / alwidth); |
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boxHeight = Math.round( |
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(float) (vpranges.getEndSeq() - vpranges.getStartSeq() + 1) |
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* od.getSequencesHeight() / alheight); |
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} |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
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@AfterClass(alwaysRun = true)... |
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public void cleanUp() |
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{ |
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al = null; |
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} |
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| 100% |
Uncovered Elements: 0 (51) |
Complexity: 1 |
Complexity Density: 0.02 |
1PASS
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@Test(groups = { "Functional" })... |
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public void testConstructor() |
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{ |
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SequenceI seqa = new Sequence("Seq1", "ABC"); |
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SequenceI seqb = new Sequence("Seq2", "ABC"); |
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SequenceI seqc = new Sequence("Seq3", "ABC"); |
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SequenceI seqd = new Sequence("Seq4", "ABC"); |
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SequenceI seqe = new Sequence("Seq5", |
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"ABCABCABCABCABCABCABCABCBACBACBACBAC"); |
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int defaultGraphHeight = 20; |
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int maxWidth = 400; |
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int minWidth = 120; |
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int maxSeqHeight = 300; |
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int minSeqHeight = 40; |
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SequenceI[] seqs1 = new SequenceI[] { seqa, seqb }; |
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Alignment al1 = new Alignment(seqs1); |
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ViewportRanges props = new ViewportRanges(al1); |
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OverviewDimensions od = new OverviewDimensionsHideHidden(props, true); |
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int scaledHeight = 267; |
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assertEquals(od.getGraphHeight(), defaultGraphHeight); |
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assertEquals(od.getSequencesHeight(), scaledHeight); |
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assertEquals(od.getWidth(), maxWidth); |
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assertEquals(od.getHeight(), scaledHeight + defaultGraphHeight); |
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SequenceI[] seqs2 = new SequenceI[] { seqa, seqb, seqc, seqd }; |
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Alignment al2 = new Alignment(seqs2); |
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props = new ViewportRanges(al2); |
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od = new OverviewDimensionsHideHidden(props, true); |
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int scaledWidth = 300; |
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assertEquals(od.getGraphHeight(), defaultGraphHeight); |
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assertEquals(od.getSequencesHeight(), maxSeqHeight); |
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assertEquals(od.getWidth(), scaledWidth); |
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assertEquals(od.getHeight(), scaledWidth + defaultGraphHeight); |
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SequenceI[] seqs3 = new SequenceI[] { seqe }; |
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Alignment al3 = new Alignment(seqs3); |
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props = new ViewportRanges(al3); |
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od = new OverviewDimensionsHideHidden(props, true); |
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assertEquals(od.getGraphHeight(), defaultGraphHeight); |
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assertEquals(od.getSequencesHeight(), minSeqHeight); |
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assertEquals(od.getWidth(), maxWidth); |
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assertEquals(od.getHeight(), minSeqHeight + defaultGraphHeight); |
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SequenceI[] seqs4 = new SequenceI[] { seqa, seqb, seqc, seqd, seqa, |
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seqb, seqc, seqd, seqa, seqb, seqc, seqd, seqa, seqb, seqc, seqd }; |
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Alignment al4 = new Alignment(seqs4); |
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props = new ViewportRanges(al4); |
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od = new OverviewDimensionsHideHidden(props, true); |
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assertEquals(od.getGraphHeight(), defaultGraphHeight); |
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assertEquals(od.getSequencesHeight(), maxSeqHeight); |
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assertEquals(od.getWidth(), minWidth); |
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assertEquals(od.getHeight(), maxSeqHeight + defaultGraphHeight); |
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Alignment al5 = new Alignment(seqs4); |
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props = new ViewportRanges(al5); |
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od = new OverviewDimensionsHideHidden(props, false); |
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assertEquals(od.getGraphHeight(), 0); |
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assertEquals(od.getSequencesHeight(), maxSeqHeight); |
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assertEquals(od.getWidth(), minWidth); |
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assertEquals(od.getHeight(), maxSeqHeight); |
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} |
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| 100% |
Uncovered Elements: 0 (55) |
Complexity: 1 |
Complexity Density: 0.02 |
1PASS
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1 |
@Test(groups = { "Functional" })... |
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public void testSetBoxFromMouseClick() |
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{ |
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od.updateViewportFromMouse(0, 0, al.getHiddenSequences(), hiddenCols); |
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assertEquals(od.getBoxX(), 0); |
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assertEquals(od.getBoxY(), 0); |
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assertEquals(od.getBoxWidth(), boxWidth); |
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assertEquals(vpranges.getStartRes(), 0); |
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assertEquals(vpranges.getStartSeq(), 0); |
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mouseClick(od, -5, 10); |
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assertEquals(od.getBoxX(), 0); |
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assertEquals(od.getBoxWidth(), boxWidth); |
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assertEquals(od.getBoxHeight(), boxHeight); |
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assertEquals(vpranges.getStartSeq() + vpranges.getViewportHeight() / 2, |
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Math.round((float) 10 * alheight / od.getSequencesHeight())); |
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assertEquals(vpranges.getStartRes(), 0); |
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mouseClick(od, 6, -2); |
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assertEquals(od.getBoxY(), 0); |
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assertEquals(od.getBoxWidth(), boxWidth); |
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assertEquals(od.getBoxHeight(), boxHeight); |
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assertEquals(vpranges.getStartRes(), 0); |
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assertEquals(vpranges.getStartSeq(), 0); |
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mouseClick(od, 101, 6); |
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assertEquals(od.getBoxX(), od.getWidth() - od.getBoxWidth()); |
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assertEquals(od.getBoxY(), 1); |
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assertEquals(od.getBoxWidth(), boxWidth); |
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assertEquals(od.getBoxHeight(), boxHeight); |
238 |
1 |
assertEquals(vpranges.getStartRes(), |
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Math.round((float) od.getBoxX() * alwidth / od.getWidth())); |
240 |
1 |
assertEquals(vpranges.getStartSeq(), Math.round( |
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(float) od.getBoxY() * alheight / od.getSequencesHeight())); |
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mouseClick(od, 10, 520); |
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assertEquals(od.getBoxX(), 0); |
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assertEquals(od.getBoxY(), od.getSequencesHeight() - od.getBoxHeight()); |
247 |
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assertEquals(od.getBoxWidth(), boxWidth); |
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assertEquals(od.getBoxHeight(), boxHeight); |
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assertEquals(vpranges.getStartRes(), |
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Math.round((float) od.getBoxX() * alwidth / od.getWidth())); |
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1 |
assertEquals(vpranges.getStartSeq(), Math.round( |
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(float) od.getBoxY() * alheight / od.getSequencesHeight()) - 1); |
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259 |
1 |
mouseClick(od, 3000, 5); |
260 |
1 |
assertEquals(od.getBoxX(), od.getWidth() - od.getBoxWidth()); |
261 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
262 |
1 |
assertEquals(od.getBoxHeight(), boxHeight); |
263 |
1 |
assertEquals(vpranges.getStartRes(), |
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Math.round((float) od.getBoxX() * alwidth / od.getWidth())); |
265 |
1 |
assertEquals(vpranges.getStartSeq(), Math.round( |
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(float) od.getBoxY() * alheight / od.getSequencesHeight())); |
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moveViewportH(20); |
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int oldboxx = od.getBoxX(); |
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int oldboxy = od.getBoxY(); |
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mouseClick(od, od.getBoxX() + od.getBoxWidth() / 2 + 6, |
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od.getBoxY() + od.getBoxHeight() / 2 + 3); |
276 |
1 |
assertEquals(od.getBoxX(), oldboxx + 6); |
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1 |
assertEquals(od.getBoxWidth(), boxWidth); |
278 |
1 |
assertEquals(od.getBoxHeight(), boxHeight); |
279 |
1 |
assertEquals(vpranges.getStartRes(), |
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Math.round((float) od.getBoxX() * alwidth / od.getWidth())); |
281 |
1 |
assertEquals(od.getBoxY(), oldboxy + 3); |
282 |
1 |
assertEquals(vpranges.getStartSeq(), Math.round( |
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(float) od.getBoxY() * alheight / od.getSequencesHeight())); |
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1 |
mouseClick(od, 0, 0); |
287 |
1 |
assertEquals(od.getBoxX(), 0); |
288 |
1 |
assertEquals(vpranges.getStartRes(), 0); |
289 |
1 |
assertEquals(od.getBoxY(), 0); |
290 |
1 |
assertEquals(vpranges.getStartSeq(), 0); |
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1 |
assertEquals(od.getBoxWidth(), boxWidth); |
292 |
1 |
assertEquals(od.getBoxHeight(), boxHeight); |
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} |
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296 |
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297 |
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298 |
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| 100% |
Uncovered Elements: 0 (20) |
Complexity: 1 |
Complexity Density: 0.05 |
1PASS
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|
299 |
1 |
@Test(groups = { "Functional" })... |
300 |
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public void testFromMouseWithHiddenColsAtStart() |
301 |
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{ |
302 |
1 |
od.updateViewportFromMouse(0, 0, al.getHiddenSequences(), hiddenCols); |
303 |
1 |
assertEquals(od.getBoxX(), 0); |
304 |
1 |
assertEquals(od.getBoxY(), 0); |
305 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
306 |
1 |
assertEquals(vpranges.getStartRes(), 0); |
307 |
1 |
assertEquals(vpranges.getStartSeq(), 0); |
308 |
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309 |
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310 |
1 |
int lastHiddenCol = 30; |
311 |
1 |
hiddenCols.hideColumns(0, lastHiddenCol); |
312 |
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313 |
1 |
testBoxIsAtClickPoint(boxWidth / 2, boxHeight / 2); |
314 |
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315 |
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316 |
1 |
testBoxIsAtClickPoint(41 + boxWidth / 2, boxHeight / 2); |
317 |
1 |
assertEquals(vpranges.getStartSeq(), 0); |
318 |
1 |
assertEquals(vpranges.getStartRes(), |
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Math.round((float) 41 * alwidth / od.getWidth())); |
320 |
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321 |
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322 |
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325 |
1 |
int xpos = 100 + boxWidth / 2; |
326 |
1 |
mouseClick(od, xpos, boxHeight / 2); |
327 |
1 |
assertEquals(od.getBoxX(), Math.round(od.getWidth()) - boxWidth); |
328 |
1 |
assertEquals(od.getBoxY(), 0); |
329 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
330 |
1 |
assertEquals(od.getBoxHeight(), boxHeight); |
331 |
1 |
assertEquals(vpranges.getStartRes(), |
332 |
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Math.round((float) od.getBoxX() * alwidth / od.getWidth())); |
333 |
1 |
assertEquals(vpranges.getStartSeq(), 0); |
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} |
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336 |
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337 |
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338 |
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|
339 |
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| 100% |
Uncovered Elements: 0 (51) |
Complexity: 1 |
Complexity Density: 0.02 |
1PASS
|
|
340 |
1 |
@Test(groups = { "Functional" })... |
341 |
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public void testFromMouseWithHiddenColsInMiddle() |
342 |
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{ |
343 |
1 |
od.updateViewportFromMouse(0, 0, al.getHiddenSequences(), hiddenCols); |
344 |
1 |
testBoxIsAtClickPoint(boxWidth / 2, boxHeight / 2); |
345 |
1 |
assertEquals(od.getBoxX(), 0); |
346 |
1 |
assertEquals(od.getBoxY(), 0); |
347 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
348 |
1 |
assertEquals(vpranges.getStartRes(), 0); |
349 |
1 |
assertEquals(vpranges.getStartSeq(), 0); |
350 |
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|
351 |
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|
352 |
1 |
int firstHidden = 63; |
353 |
1 |
int lastHidden = 73; |
354 |
1 |
hiddenCols.hideColumns(firstHidden, lastHidden); |
355 |
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|
356 |
1 |
od.setBoxPosition(al.getHiddenSequences(), hiddenCols); |
357 |
1 |
testBoxIsAtClickPoint(boxWidth / 2, boxHeight / 2); |
358 |
1 |
assertEquals(od.getBoxX(), 0); |
359 |
1 |
assertEquals(od.getBoxY(), 0); |
360 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
361 |
1 |
assertEquals(vpranges.getStartRes(), 0); |
362 |
1 |
assertEquals(vpranges.getStartSeq(), 0); |
363 |
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|
364 |
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|
365 |
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|
366 |
1 |
int xpos = 54 - boxWidth / 2; |
367 |
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|
368 |
1 |
mouseClick(od, xpos, boxHeight / 2); |
369 |
1 |
testBoxIsAtClickPoint(xpos, boxHeight / 2); |
370 |
1 |
assertEquals(vpranges.getStartRes(), 1 + |
371 |
|
Math.round((xpos - boxWidth / 2) * alwidth / od.getWidth())); |
372 |
1 |
assertEquals(vpranges.getStartSeq(), 0); |
373 |
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|
374 |
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|
375 |
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|
376 |
1 |
xpos = 33; |
377 |
1 |
mouseClick(od, xpos, boxHeight / 2); |
378 |
1 |
testBoxIsAtClickPoint(xpos, boxHeight / 2); |
379 |
1 |
assertEquals(vpranges.getStartRes(), Math.round( |
380 |
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(float) (xpos - boxWidth / 2) * alwidth / od.getWidth())); |
381 |
1 |
assertEquals(vpranges.getStartSeq(), 0); |
382 |
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|
383 |
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|
384 |
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|
385 |
1 |
xpos = Math.round((float) 50 * od.getWidth() / alwidth) + boxWidth / 2; |
386 |
1 |
mouseClick(od, xpos, boxHeight / 2); |
387 |
1 |
assertEquals(od.getBoxX() + od.getBoxWidth() / 2, xpos); |
388 |
1 |
assertEquals(od.getBoxY(), 0); |
389 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
390 |
1 |
assertEquals(od.getBoxHeight(), boxHeight); |
391 |
1 |
assertEquals(vpranges.getStartRes(), 50); |
392 |
1 |
assertEquals(vpranges.getStartSeq(), 0); |
393 |
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|
394 |
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|
395 |
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|
396 |
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|
397 |
1 |
xpos = Math.round((float) 75 * od.getWidth() / alwidth) + boxWidth / 2; |
398 |
1 |
mouseClick(od, xpos, boxHeight / 2); |
399 |
1 |
assertEquals(od.getBoxX() + od.getBoxWidth() / 2, xpos); |
400 |
1 |
assertEquals(od.getBoxY(), 0); |
401 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
402 |
1 |
assertEquals(od.getBoxHeight(), boxHeight); |
403 |
1 |
assertEquals(vpranges.getStartSeq(), 0); |
404 |
1 |
assertEquals(vpranges.getStartRes(), 75); |
405 |
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|
406 |
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|
407 |
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|
408 |
1 |
xpos = 3000; |
409 |
1 |
mouseClick(od, xpos, boxHeight / 2); |
410 |
1 |
assertEquals(od.getBoxX(), Math.round(od.getWidth()) - boxWidth); |
411 |
1 |
assertEquals(od.getBoxY(), 0); |
412 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
413 |
1 |
assertEquals(od.getBoxHeight(), boxHeight); |
414 |
1 |
assertEquals(vpranges.getStartRes(), |
415 |
|
Math.round((float) od.getBoxX() * alwidth / od.getWidth())); |
416 |
1 |
assertEquals(vpranges.getStartSeq(), 0); |
417 |
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|
418 |
|
} |
419 |
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|
420 |
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|
421 |
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|
422 |
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|
423 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (33) |
Complexity: 1 |
Complexity Density: 0.03 |
1PASS
|
|
424 |
1 |
@Test(groups = { "Functional" })... |
425 |
|
public void testFromMouseWithHiddenColsAtEnd() |
426 |
|
{ |
427 |
1 |
od.updateViewportFromMouse(0, 0, al.getHiddenSequences(), hiddenCols); |
428 |
1 |
assertEquals(od.getBoxX(), 0); |
429 |
1 |
assertEquals(od.getBoxY(), 0); |
430 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
431 |
1 |
assertEquals(vpranges.getStartRes(), 0); |
432 |
1 |
assertEquals(vpranges.getStartSeq(), 0); |
433 |
|
|
434 |
|
|
435 |
1 |
int firstHidden = 140; |
436 |
1 |
int lastHidden = 164; |
437 |
1 |
hiddenCols.hideColumns(firstHidden, lastHidden); |
438 |
1 |
od.setBoxPosition(al.getHiddenSequences(), hiddenCols); |
439 |
1 |
assertEquals(od.getBoxX(), 0); |
440 |
1 |
assertEquals(od.getBoxY(), 0); |
441 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
442 |
1 |
assertEquals(vpranges.getStartRes(), 0); |
443 |
1 |
assertEquals(vpranges.getStartSeq(), 0); |
444 |
|
|
445 |
|
|
446 |
|
|
447 |
1 |
int xpos = 30; |
448 |
1 |
int ypos = 6; |
449 |
1 |
testBoxIsAtClickPoint(xpos, ypos); |
450 |
1 |
assertEquals(vpranges.getStartSeq(), Math.round( |
451 |
|
(float) (ypos - boxHeight / 2) * alheight / od.getHeight())); |
452 |
1 |
assertEquals(vpranges.getStartRes(), Math.round( |
453 |
|
(float) (xpos - boxWidth / 2) * alwidth / od.getWidth())); |
454 |
|
|
455 |
|
|
456 |
|
|
457 |
1 |
xpos = Math.round((float) 144 * od.getWidth() / alwidth) - boxWidth; |
458 |
1 |
mouseClick(od, xpos, boxHeight / 2); |
459 |
1 |
testBoxIsAtClickPoint(xpos, boxHeight / 2); |
460 |
1 |
assertEquals(vpranges.getStartRes(), Math.round( |
461 |
|
(float) (xpos - boxWidth / 2) * alwidth / od.getWidth())); |
462 |
1 |
assertEquals(vpranges.getStartSeq(), 0); |
463 |
|
|
464 |
|
|
465 |
|
|
466 |
1 |
xpos = 3000; |
467 |
1 |
mouseClick(od, xpos, 0); |
468 |
1 |
assertEquals(od.getBoxX(), Math.round(od.getWidth()) - boxWidth); |
469 |
1 |
assertEquals(od.getBoxY(), 0); |
470 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
471 |
1 |
assertEquals(od.getBoxHeight(), boxHeight); |
472 |
1 |
assertEquals(vpranges.getStartRes(), |
473 |
|
Math.round((float) od.getBoxX() * alwidth / od.getWidth())); |
474 |
1 |
assertEquals(vpranges.getStartSeq(), 0); |
475 |
|
} |
476 |
|
|
477 |
|
|
478 |
|
|
479 |
|
|
480 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (20) |
Complexity: 1 |
Complexity Density: 0.05 |
1PASS
|
|
481 |
1 |
@Test(groups = { "Functional" })... |
482 |
|
public void testSetBoxFromViewport() |
483 |
|
{ |
484 |
|
|
485 |
1 |
moveViewport(0, 0); |
486 |
1 |
assertEquals(od.getBoxX(), 0); |
487 |
1 |
assertEquals(od.getBoxY(), 0); |
488 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
489 |
1 |
assertEquals(od.getBoxHeight(), boxHeight); |
490 |
|
|
491 |
|
|
492 |
1 |
moveViewportH(70); |
493 |
1 |
assertEquals(od.getBoxX(), |
494 |
|
Math.round((float) 70 * od.getWidth() / alwidth)); |
495 |
1 |
assertEquals(od.getBoxY(), 0); |
496 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
497 |
1 |
assertEquals(od.getBoxHeight(), boxHeight); |
498 |
|
|
499 |
|
|
500 |
1 |
moveViewportV(100); |
501 |
1 |
assertEquals(od.getBoxX(), |
502 |
|
Math.round((float) 70 * od.getWidth() / alwidth)); |
503 |
1 |
assertEquals(od.getBoxY(), |
504 |
|
Math.round(100 * od.getSequencesHeight() / alheight)); |
505 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
506 |
1 |
assertEquals(od.getBoxHeight(), boxHeight); |
507 |
|
|
508 |
|
|
509 |
1 |
moveViewport(98, 508); |
510 |
1 |
assertEquals(od.getBoxX(), |
511 |
|
Math.round((float) 98 * od.getWidth() / alwidth)); |
512 |
1 |
assertEquals(od.getBoxY(), |
513 |
|
Math.round((float) 508 * od.getSequencesHeight() / alheight)); |
514 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
515 |
1 |
assertEquals(od.getBoxHeight(), boxHeight); |
516 |
|
} |
517 |
|
|
518 |
|
|
519 |
|
|
520 |
|
|
521 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (13) |
Complexity: 1 |
Complexity Density: 0.08 |
1PASS
|
|
522 |
1 |
@Test(groups = { "Functional" })... |
523 |
|
public void testSetBoxFromViewportHiddenColsAtStart() |
524 |
|
{ |
525 |
1 |
int firstHidden = 0; |
526 |
1 |
int lastHidden = 20; |
527 |
1 |
hiddenCols.hideColumns(firstHidden, lastHidden); |
528 |
|
|
529 |
|
|
530 |
1 |
moveViewport(0, 0); |
531 |
1 |
assertEquals(od.getBoxX(), 0); |
532 |
1 |
assertEquals(od.getBoxY(), 0); |
533 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
534 |
1 |
assertEquals(od.getBoxHeight(), boxHeight); |
535 |
|
|
536 |
|
|
537 |
|
|
538 |
1 |
moveViewport(98 - lastHidden - 1, 0); |
539 |
1 |
assertEquals(od.getBoxX(), Math.round( |
540 |
|
(float) (98 - lastHidden - 1) * od.getWidth() / alwidth)); |
541 |
1 |
assertEquals(od.getBoxY(), 0); |
542 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
543 |
1 |
assertEquals(od.getBoxHeight(), boxHeight); |
544 |
|
} |
545 |
|
|
546 |
|
|
547 |
|
|
548 |
|
|
549 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (23) |
Complexity: 1 |
Complexity Density: 0.04 |
1PASS
|
|
550 |
1 |
@Test(groups = { "Functional" })... |
551 |
|
public void testSetBoxFromViewportHiddenColsInMiddle() |
552 |
|
{ |
553 |
1 |
int firstHidden = 68; |
554 |
1 |
int lastHidden = 78; |
555 |
1 |
hiddenCols.hideColumns(firstHidden, lastHidden); |
556 |
|
|
557 |
|
|
558 |
1 |
moveViewport(3, 0); |
559 |
|
|
560 |
1 |
assertEquals(od.getBoxX(), |
561 |
|
Math.round((float) 3 * od.getWidth() / alwidth)); |
562 |
1 |
assertEquals(od.getBoxY(), 0); |
563 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
564 |
1 |
assertEquals(od.getBoxHeight(), boxHeight); |
565 |
|
|
566 |
|
|
567 |
1 |
moveViewport(10, 0); |
568 |
1 |
assertEquals(od.getBoxX(), |
569 |
|
Math.round((float) 10 * od.getWidth() / alwidth)); |
570 |
1 |
assertEquals(od.getBoxY(), 0); |
571 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
572 |
1 |
assertEquals(od.getBoxHeight(), boxHeight); |
573 |
|
|
574 |
|
|
575 |
1 |
moveViewport(63, 0); |
576 |
1 |
assertEquals(od.getBoxX(), |
577 |
|
Math.round((float) 63 * od.getWidth() / alwidth)); |
578 |
1 |
assertEquals(od.getBoxY(), 0); |
579 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
580 |
1 |
assertEquals(od.getBoxHeight(), boxHeight); |
581 |
|
|
582 |
|
|
583 |
1 |
moveViewport(80 - (lastHidden - firstHidden + 1), 0); |
584 |
1 |
assertEquals(od.getBoxX(), |
585 |
|
Math.round((float) (80 - (lastHidden - firstHidden + 1)) |
586 |
|
* od.getWidth() / alwidth)); |
587 |
1 |
assertEquals(od.getBoxY(), 0); |
588 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
589 |
1 |
assertEquals(od.getBoxHeight(), boxHeight); |
590 |
|
|
591 |
|
} |
592 |
|
|
593 |
|
|
594 |
|
|
595 |
|
|
596 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (13) |
Complexity: 1 |
Complexity Density: 0.08 |
1PASS
|
|
597 |
1 |
@Test(groups = { "Functional" })... |
598 |
|
public void testSetBoxFromViewportHiddenColsAtEnd() |
599 |
|
{ |
600 |
1 |
int firstHidden = 152; |
601 |
1 |
int lastHidden = 164; |
602 |
1 |
hiddenCols.hideColumns(firstHidden, lastHidden); |
603 |
|
|
604 |
|
|
605 |
1 |
moveViewport(3, 0); |
606 |
1 |
assertEquals(od.getBoxX(), |
607 |
|
Math.round((float) 3 * od.getWidth() / alwidth)); |
608 |
1 |
assertEquals(od.getBoxY(), 0); |
609 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
610 |
1 |
assertEquals(od.getBoxHeight(), boxHeight); |
611 |
|
|
612 |
|
|
613 |
|
|
614 |
|
|
615 |
1 |
moveViewport(firstHidden - viewWidth, 0); |
616 |
1 |
assertEquals(od.getBoxX(), Math.round( |
617 |
|
(float) (firstHidden - viewWidth) * od.getWidth() / alwidth)); |
618 |
1 |
assertEquals(od.getBoxY(), 0); |
619 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
620 |
1 |
assertEquals(od.getBoxHeight(), boxHeight); |
621 |
|
} |
622 |
|
|
623 |
|
|
624 |
|
|
625 |
|
|
626 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (17) |
Complexity: 1 |
Complexity Density: 0.06 |
1PASS
|
|
627 |
1 |
@Test(groups = { "Functional" })... |
628 |
|
public void testSetBoxFromViewportHiddenRowsAtStart() |
629 |
|
{ |
630 |
1 |
int firstHidden = 0; |
631 |
1 |
int lastHidden = 20; |
632 |
1 |
hideSequences(firstHidden, lastHidden); |
633 |
|
|
634 |
|
|
635 |
1 |
alheight = vpranges.getVisibleAlignmentHeight(); |
636 |
1 |
alwidth = vpranges.getVisibleAlignmentWidth(); |
637 |
|
|
638 |
1 |
boxWidth = Math.round( |
639 |
|
(float) (vpranges.getEndRes() - vpranges.getStartRes() + 1) |
640 |
|
* od.getWidth() / alwidth); |
641 |
1 |
boxHeight = Math.round( |
642 |
|
(float) (vpranges.getEndSeq() - vpranges.getStartSeq() + 1) |
643 |
|
* od.getSequencesHeight() / alheight); |
644 |
|
|
645 |
|
|
646 |
|
|
647 |
1 |
moveViewport(0, 0); |
648 |
1 |
assertEquals(od.getBoxX(), 0); |
649 |
1 |
assertEquals(od.getBoxY(), 0); |
650 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
651 |
1 |
assertEquals(od.getBoxHeight(), boxHeight); |
652 |
|
|
653 |
|
|
654 |
1 |
moveViewport(0, 525 - viewHeight - lastHidden - 1); |
655 |
1 |
assertEquals(od.getBoxX(), 0); |
656 |
1 |
assertEquals(od.getBoxY(), |
657 |
|
Math.round((float) (525 - viewHeight - lastHidden - 1) |
658 |
|
* od.getSequencesHeight() / alheight)); |
659 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
660 |
1 |
assertEquals(od.getBoxHeight(), boxHeight); |
661 |
|
} |
662 |
|
|
663 |
|
|
664 |
|
|
665 |
|
|
666 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (17) |
Complexity: 1 |
Complexity Density: 0.06 |
1PASS
|
|
667 |
1 |
@Test(groups = { "Functional" })... |
668 |
|
public void testSetBoxFromViewportHiddenRowsInMiddle() |
669 |
|
{ |
670 |
1 |
int firstHidden = 200; |
671 |
1 |
int lastHidden = 210; |
672 |
1 |
hideSequences(firstHidden, lastHidden); |
673 |
|
|
674 |
|
|
675 |
1 |
alheight = vpranges.getVisibleAlignmentHeight(); |
676 |
1 |
alwidth = vpranges.getVisibleAlignmentWidth(); |
677 |
|
|
678 |
1 |
boxWidth = Math.round( |
679 |
|
(float) (vpranges.getEndRes() - vpranges.getStartRes() + 1) |
680 |
|
* od.getWidth() / alwidth); |
681 |
1 |
boxHeight = Math.round( |
682 |
|
(float) (vpranges.getEndSeq() - vpranges.getStartSeq() + 1) |
683 |
|
* od.getSequencesHeight() / alheight); |
684 |
|
|
685 |
|
|
686 |
|
|
687 |
1 |
moveViewport(0, 0); |
688 |
1 |
assertEquals(od.getBoxX(), 0); |
689 |
1 |
assertEquals(od.getBoxY(), 0); |
690 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
691 |
1 |
assertEquals(od.getBoxHeight(), boxHeight); |
692 |
|
|
693 |
|
|
694 |
1 |
moveViewport(0, 198); |
695 |
1 |
assertEquals(od.getBoxX(), 0); |
696 |
1 |
assertEquals(od.getBoxY(), |
697 |
|
Math.round((float) 198 * od.getSequencesHeight() / alheight)); |
698 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
699 |
1 |
assertEquals(od.getBoxHeight(), boxHeight); |
700 |
|
} |
701 |
|
|
702 |
|
|
703 |
|
|
704 |
|
|
705 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (17) |
Complexity: 1 |
Complexity Density: 0.06 |
1PASS
|
|
706 |
1 |
@Test(groups = { "Functional" })... |
707 |
|
public void testSetBoxFromViewportHiddenRowsAtEnd() |
708 |
|
{ |
709 |
1 |
int firstHidden = 500; |
710 |
1 |
int lastHidden = 524; |
711 |
1 |
hideSequences(firstHidden, lastHidden); |
712 |
|
|
713 |
|
|
714 |
1 |
alheight = vpranges.getVisibleAlignmentHeight(); |
715 |
1 |
alwidth = vpranges.getVisibleAlignmentWidth(); |
716 |
|
|
717 |
1 |
boxWidth = Math.round( |
718 |
|
(float) (vpranges.getEndRes() - vpranges.getStartRes() + 1) |
719 |
|
* od.getWidth() / alwidth); |
720 |
1 |
boxHeight = Math.round( |
721 |
|
(float) (vpranges.getEndSeq() - vpranges.getStartSeq() + 1) |
722 |
|
* od.getSequencesHeight() / alheight); |
723 |
|
|
724 |
|
|
725 |
|
|
726 |
1 |
moveViewport(0, 0); |
727 |
1 |
assertEquals(od.getBoxX(), 0); |
728 |
1 |
assertEquals(od.getBoxY(), 0); |
729 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
730 |
1 |
assertEquals(od.getBoxHeight(), boxHeight); |
731 |
|
|
732 |
|
|
733 |
|
|
734 |
1 |
moveViewport(0, firstHidden - viewHeight - 1); |
735 |
1 |
assertEquals(od.getBoxX(), 0); |
736 |
1 |
assertEquals(od.getBoxY(), |
737 |
|
Math.round((float) (firstHidden - viewHeight - 1) |
738 |
|
* od.getSequencesHeight() / alheight)); |
739 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
740 |
1 |
assertEquals(od.getBoxHeight(), boxHeight); |
741 |
|
|
742 |
|
} |
743 |
|
|
744 |
|
|
745 |
|
|
746 |
|
|
747 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (23) |
Complexity: 1 |
Complexity Density: 0.04 |
1PASS
|
|
748 |
1 |
@Test(groups = { "Functional" })... |
749 |
|
public void testFromMouseWithHiddenRowsAtStart() |
750 |
|
{ |
751 |
1 |
od.updateViewportFromMouse(0, 0, al.getHiddenSequences(), hiddenCols); |
752 |
1 |
assertEquals(od.getBoxX(), 0); |
753 |
1 |
assertEquals(od.getBoxY(), 0); |
754 |
1 |
assertEquals(od.getBoxHeight(), boxHeight); |
755 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
756 |
1 |
assertEquals(vpranges.getStartRes(), 0); |
757 |
1 |
assertEquals(vpranges.getStartSeq(), 0); |
758 |
|
|
759 |
|
|
760 |
1 |
int lastHiddenRow = 30; |
761 |
1 |
hideSequences(0, lastHiddenRow); |
762 |
|
|
763 |
|
|
764 |
1 |
alheight = vpranges.getVisibleAlignmentHeight(); |
765 |
1 |
alwidth = vpranges.getVisibleAlignmentWidth(); |
766 |
|
|
767 |
1 |
boxWidth = Math.round( |
768 |
|
(float) (vpranges.getEndRes() - vpranges.getStartRes() + 1) |
769 |
|
* od.getWidth() / alwidth); |
770 |
1 |
boxHeight = Math.round( |
771 |
|
(float) (vpranges.getEndSeq() - vpranges.getStartSeq() + 1) |
772 |
|
* od.getSequencesHeight() / alheight); |
773 |
|
|
774 |
1 |
od.setBoxPosition(al.getHiddenSequences(), hiddenCols); |
775 |
1 |
assertEquals(od.getBoxX(), 0); |
776 |
1 |
assertEquals(od.getBoxY(), 0); |
777 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
778 |
1 |
assertEquals(od.getBoxHeight(), boxHeight); |
779 |
|
|
780 |
|
|
781 |
1 |
mouseClick(od, 0, 151 + boxHeight / 2); |
782 |
1 |
assertEquals(od.getBoxX(), 0); |
783 |
1 |
assertEquals(od.getBoxY(), 151); |
784 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
785 |
1 |
assertEquals(od.getBoxHeight(), boxHeight); |
786 |
|
} |
787 |
|
|
788 |
|
|
789 |
|
|
790 |
|
|
791 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (31) |
Complexity: 1 |
Complexity Density: 0.03 |
1PASS
|
|
792 |
1 |
@Test(groups = { "Functional" })... |
793 |
|
public void testFromMouseWithHiddenRowsInMiddle() |
794 |
|
{ |
795 |
1 |
od.updateViewportFromMouse(0, 0, al.getHiddenSequences(), hiddenCols); |
796 |
|
|
797 |
1 |
assertEquals(od.getBoxX(), 0); |
798 |
1 |
assertEquals(od.getBoxY(), 0); |
799 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
800 |
1 |
assertEquals(od.getBoxHeight(), boxHeight); |
801 |
1 |
assertEquals(vpranges.getStartRes(), 0); |
802 |
1 |
assertEquals(vpranges.getStartSeq(), 0); |
803 |
|
|
804 |
|
|
805 |
|
|
806 |
1 |
int firstHiddenRow = 50; |
807 |
1 |
int lastHiddenRow = 54; |
808 |
1 |
hideSequences(firstHiddenRow, lastHiddenRow); |
809 |
|
|
810 |
|
|
811 |
1 |
alheight = vpranges.getVisibleAlignmentHeight(); |
812 |
1 |
alwidth = vpranges.getVisibleAlignmentWidth(); |
813 |
|
|
814 |
1 |
boxWidth = Math.round( |
815 |
|
(float) (vpranges.getEndRes() - vpranges.getStartRes() + 1) |
816 |
|
* od.getWidth() / alwidth); |
817 |
1 |
boxHeight = Math.round( |
818 |
|
(float) (vpranges.getEndSeq() - vpranges.getStartSeq() + 1) |
819 |
|
* od.getSequencesHeight() / alheight); |
820 |
|
|
821 |
1 |
od.setBoxPosition(al.getHiddenSequences(), hiddenCols); |
822 |
|
|
823 |
1 |
assertEquals(od.getBoxX(), 0); |
824 |
1 |
assertEquals(od.getBoxY(), 0); |
825 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
826 |
1 |
assertEquals(od.getBoxHeight(), boxHeight); |
827 |
|
|
828 |
|
|
829 |
1 |
int ypos = 35 + viewHeight / 2; |
830 |
1 |
mouseClick(od, 0, |
831 |
|
Math.round((float) ypos * od.getSequencesHeight() / alheight)); |
832 |
1 |
assertEquals(od.getBoxX(), 0); |
833 |
1 |
assertEquals(od.getBoxY(), |
834 |
|
Math.round((float) 35 * od.getSequencesHeight() / alheight)); |
835 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
836 |
1 |
assertEquals(od.getBoxHeight(), boxHeight); |
837 |
|
|
838 |
|
|
839 |
1 |
ypos = 45 + viewHeight / 2; |
840 |
1 |
mouseClick(od, 0, |
841 |
|
Math.round((float) ypos * od.getSequencesHeight() / alheight)); |
842 |
1 |
assertEquals(od.getBoxX(), 0); |
843 |
1 |
assertEquals(od.getBoxY(), |
844 |
|
Math.round((float) 45 * od.getSequencesHeight() / alheight)); |
845 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
846 |
1 |
assertEquals(od.getBoxHeight(), boxHeight); |
847 |
|
} |
848 |
|
|
849 |
|
|
850 |
|
|
851 |
|
|
852 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (31) |
Complexity: 1 |
Complexity Density: 0.03 |
1PASS
|
|
853 |
1 |
@Test(groups = { "Functional" })... |
854 |
|
public void testFromMouseWithHiddenRowsAtEnd() |
855 |
|
{ |
856 |
1 |
od.updateViewportFromMouse(0, 0, al.getHiddenSequences(), hiddenCols); |
857 |
1 |
assertEquals(od.getBoxX(), 0); |
858 |
1 |
assertEquals(od.getBoxY(), 0); |
859 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
860 |
1 |
assertEquals(od.getBoxHeight(), boxHeight); |
861 |
1 |
assertEquals(vpranges.getStartRes(), 0); |
862 |
1 |
assertEquals(vpranges.getStartSeq(), 0); |
863 |
|
|
864 |
|
|
865 |
|
|
866 |
1 |
int firstHidden = 500; |
867 |
1 |
int lastHidden = 524; |
868 |
1 |
hideSequences(firstHidden, lastHidden); |
869 |
|
|
870 |
|
|
871 |
1 |
alheight = vpranges.getVisibleAlignmentHeight(); |
872 |
1 |
alwidth = vpranges.getVisibleAlignmentWidth(); |
873 |
|
|
874 |
1 |
boxWidth = Math.round( |
875 |
|
(float) (vpranges.getEndRes() - vpranges.getStartRes() + 1) |
876 |
|
* od.getWidth() / alwidth); |
877 |
1 |
boxHeight = Math.round( |
878 |
|
(float) (vpranges.getEndSeq() - vpranges.getStartSeq() + 1) |
879 |
|
* od.getSequencesHeight() / alheight); |
880 |
|
|
881 |
1 |
od.setBoxPosition(al.getHiddenSequences(), hiddenCols); |
882 |
1 |
assertEquals(od.getBoxX(), 0); |
883 |
1 |
assertEquals(od.getBoxY(), 0); |
884 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
885 |
1 |
assertEquals(od.getBoxHeight(), boxHeight); |
886 |
|
|
887 |
|
|
888 |
1 |
int ypos = 41 + viewHeight / 2; |
889 |
1 |
mouseClick(od, 0, |
890 |
|
Math.round((float) ypos * od.getSequencesHeight() / alheight)); |
891 |
1 |
assertEquals(od.getBoxX(), 0); |
892 |
1 |
assertEquals(od.getBoxY(), |
893 |
|
Math.round((float) 41 * od.getSequencesHeight() / alheight)); |
894 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
895 |
1 |
assertEquals(od.getBoxHeight(), boxHeight); |
896 |
|
|
897 |
|
|
898 |
|
|
899 |
1 |
ypos = 497 + viewHeight / 2; |
900 |
1 |
mouseClick(od, 0, |
901 |
|
Math.round((float) ypos * od.getSequencesHeight() / alheight)); |
902 |
1 |
assertEquals(od.getBoxX(), 0); |
903 |
1 |
assertEquals(od.getBoxY(), Math |
904 |
|
.round((float) firstHidden * od.getSequencesHeight() / alheight) |
905 |
|
- boxHeight); |
906 |
1 |
assertEquals(od.getBoxWidth(), boxWidth); |
907 |
1 |
assertEquals(od.getBoxHeight(), boxHeight); |
908 |
|
} |
909 |
|
|
910 |
|
|
911 |
|
|
912 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (20) |
Complexity: 1 |
Complexity Density: 0.05 |
1PASS
|
|
913 |
1 |
@Test(groups = { "Functional" })... |
914 |
|
public void testPositionInBox() |
915 |
|
{ |
916 |
1 |
od.updateViewportFromMouse(0, 0, al.getHiddenSequences(), hiddenCols); |
917 |
|
|
918 |
1 |
assertFalse(od.isPositionInBox(0, 0)); |
919 |
1 |
assertTrue(od.isPositionInBox(10, 9)); |
920 |
1 |
assertFalse(od.isPositionInBox(0, 9)); |
921 |
1 |
assertFalse(od.isPositionInBox(9, 0)); |
922 |
1 |
assertFalse(od.isPositionInBox(75, 20)); |
923 |
|
|
924 |
|
|
925 |
|
|
926 |
1 |
hiddenCols.hideColumns(1, 4); |
927 |
1 |
od.setBoxPosition(al.getHiddenSequences(), hiddenCols); |
928 |
1 |
assertFalse(od.isPositionInBox(0, 0)); |
929 |
1 |
assertTrue(od.isPositionInBox(10, 9)); |
930 |
1 |
assertFalse(od.isPositionInBox(0, 9)); |
931 |
1 |
assertFalse(od.isPositionInBox(9, 0)); |
932 |
1 |
assertFalse(od.isPositionInBox(75, 20)); |
933 |
|
|
934 |
|
|
935 |
|
|
936 |
1 |
hideSequences(1, 3); |
937 |
1 |
od.setBoxPosition(al.getHiddenSequences(), hiddenCols); |
938 |
1 |
assertFalse(od.isPositionInBox(0, 0)); |
939 |
1 |
assertTrue(od.isPositionInBox(10, 9)); |
940 |
1 |
assertFalse(od.isPositionInBox(0, 9)); |
941 |
1 |
assertFalse(od.isPositionInBox(9, 0)); |
942 |
1 |
assertFalse(od.isPositionInBox(75, 20)); |
943 |
|
} |
944 |
|
|
945 |
|
|
946 |
|
|
947 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (20) |
Complexity: 1 |
Complexity Density: 0.05 |
1PASS
|
|
948 |
1 |
@Test(groups = { "Functional" })... |
949 |
|
public void testDragging() |
950 |
|
{ |
951 |
1 |
od.updateViewportFromMouse(0, 0, al.getHiddenSequences(), hiddenCols); |
952 |
1 |
od.setDragPoint(4, 16, al.getHiddenSequences(), hiddenCols); |
953 |
1 |
od.adjustViewportFromMouse(20, 22, al.getHiddenSequences(), hiddenCols); |
954 |
|
|
955 |
|
|
956 |
|
|
957 |
|
|
958 |
1 |
od.setBoxPosition(al.getHiddenSequences(), hiddenCols); |
959 |
|
|
960 |
|
|
961 |
1 |
assertEquals(od.getBoxX(), 16); |
962 |
1 |
assertEquals(od.getBoxY(), 6); |
963 |
|
|
964 |
|
|
965 |
1 |
hiddenCols.hideColumns(1, 4); |
966 |
1 |
od.updateViewportFromMouse(0, 0, al.getHiddenSequences(), hiddenCols); |
967 |
1 |
od.setDragPoint(4, 16, al.getHiddenSequences(), hiddenCols); |
968 |
1 |
od.adjustViewportFromMouse(20, 22, al.getHiddenSequences(), hiddenCols); |
969 |
1 |
od.setBoxPosition(al.getHiddenSequences(), hiddenCols); |
970 |
|
|
971 |
|
|
972 |
1 |
assertEquals(od.getBoxX(), 16); |
973 |
1 |
assertEquals(od.getBoxY(), 6); |
974 |
|
|
975 |
|
|
976 |
|
|
977 |
1 |
hideSequences(1, 3); |
978 |
1 |
od.updateViewportFromMouse(0, 0, al.getHiddenSequences(), hiddenCols); |
979 |
1 |
od.setDragPoint(4, 16, al.getHiddenSequences(), hiddenCols); |
980 |
1 |
od.adjustViewportFromMouse(20, 22, al.getHiddenSequences(), hiddenCols); |
981 |
1 |
od.setBoxPosition(al.getHiddenSequences(), hiddenCols); |
982 |
|
|
983 |
|
|
984 |
1 |
assertEquals(od.getBoxX(), 16); |
985 |
1 |
assertEquals(od.getBoxY(), 6); |
986 |
|
} |
987 |
|
|
988 |
|
|
989 |
|
|
990 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
991 |
2 |
private void moveViewportH(int startRes)... |
992 |
|
{ |
993 |
2 |
vpranges.setViewportStartAndWidth(startRes, viewWidth); |
994 |
2 |
od.setBoxPosition(al.getHiddenSequences(), hiddenCols); |
995 |
|
} |
996 |
|
|
997 |
|
|
998 |
|
|
999 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
1000 |
1 |
private void moveViewportV(int startSeq)... |
1001 |
|
{ |
1002 |
1 |
vpranges.setViewportStartAndHeight(startSeq, viewHeight); |
1003 |
1 |
od.setBoxPosition(al.getHiddenSequences(), hiddenCols); |
1004 |
|
} |
1005 |
|
|
1006 |
|
|
1007 |
|
|
1008 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (3) |
Complexity: 1 |
Complexity Density: 0.33 |
|
1009 |
33 |
private void moveViewport(int startRes, int startSeq)... |
1010 |
|
{ |
1011 |
33 |
vpranges.setViewportStartAndWidth(startRes, viewWidth); |
1012 |
33 |
vpranges.setViewportStartAndHeight(startSeq, viewHeight); |
1013 |
33 |
od.setBoxPosition(al.getHiddenSequences(), hiddenCols); |
1014 |
|
} |
1015 |
|
|
1016 |
|
|
1017 |
|
|
1018 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
1019 |
45 |
private void mouseClick(OverviewDimensions od, int x, int y)... |
1020 |
|
{ |
1021 |
45 |
od.updateViewportFromMouse(x, y, al.getHiddenSequences(), hiddenCols); |
1022 |
|
|
1023 |
|
|
1024 |
|
|
1025 |
|
|
1026 |
45 |
od.setBoxPosition(al.getHiddenSequences(), hiddenCols); |
1027 |
|
} |
1028 |
|
|
1029 |
|
|
1030 |
|
|
1031 |
|
|
1032 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (5) |
Complexity: 1 |
Complexity Density: 0.2 |
|
1033 |
8 |
private void testBoxIsAtClickPoint(int xpos, int ypos)... |
1034 |
|
{ |
1035 |
8 |
mouseClick(od, xpos, ypos); |
1036 |
8 |
assertEquals(od.getBoxX() + od.getBoxWidth() / 2, xpos); |
1037 |
8 |
assertEquals(od.getBoxY() + od.getBoxHeight() / 2, ypos); |
1038 |
8 |
assertEquals(od.getBoxWidth(), boxWidth); |
1039 |
8 |
assertEquals(od.getBoxHeight(), boxHeight); |
1040 |
|
|
1041 |
|
} |
1042 |
|
|
1043 |
|
|
1044 |
|
|
1045 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (8) |
Complexity: 2 |
Complexity Density: 0.33 |
|
1046 |
8 |
private void hideSequences(int start, int end)... |
1047 |
|
{ |
1048 |
8 |
SequenceI[] allseqs = al.getSequencesArray(); |
1049 |
8 |
SequenceGroup theseSeqs = new SequenceGroup(); |
1050 |
|
|
1051 |
132 |
for (int i = start; i <= end; i++) |
1052 |
|
{ |
1053 |
124 |
theseSeqs.addSequence(allseqs[i], false); |
1054 |
124 |
al.getHiddenSequences().hideSequence(allseqs[i]); |
1055 |
|
} |
1056 |
|
|
1057 |
8 |
hiddenRepSequences.put(allseqs[start], theseSeqs); |
1058 |
|
} |
1059 |
|
} |