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package jalview.gui; |
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import jalview.io.packed.DataProvider.JvDataType; |
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import jalview.jbgui.GRestServiceEditorPane; |
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import jalview.util.MessageManager; |
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import jalview.ws.rest.InputType; |
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import jalview.ws.rest.RestServiceDescription; |
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import java.awt.BorderLayout; |
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import java.awt.FlowLayout; |
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import java.awt.event.ActionEvent; |
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import java.awt.event.ActionListener; |
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import java.awt.event.ComponentEvent; |
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import java.awt.event.ComponentListener; |
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import java.awt.event.KeyEvent; |
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import java.awt.event.KeyListener; |
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import java.awt.event.MouseEvent; |
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import java.util.HashMap; |
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import java.util.List; |
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import java.util.Map; |
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import java.util.Vector; |
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import java.util.regex.Matcher; |
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import java.util.regex.Pattern; |
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import javax.swing.JFrame; |
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import javax.swing.JMenuItem; |
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import javax.swing.JPanel; |
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import javax.swing.JPopupMenu; |
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import javax.swing.event.ChangeEvent; |
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import javax.swing.event.ChangeListener; |
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| 0% |
Uncovered Elements: 262 (262) |
Complexity: 63 |
Complexity Density: 0.36 |
|
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public class RestServiceEditorPane extends GRestServiceEditorPane |
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{ |
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jalview.ws.rest.RestServiceDescription currentservice = null; |
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jalview.ws.rest.RestServiceDescription oldservice = null; |
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| 0% |
Uncovered Elements: 7 (7) |
Complexity: 1 |
Complexity Density: 0.14 |
|
65 |
0 |
public RestServiceEditorPane()... |
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{ |
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0 |
super(); |
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|
69 |
0 |
urldesc.addKeyListener(new KeyListener() |
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{ |
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| - |
Uncovered Elements: 0 (0) |
Complexity: 1 |
Complexity Density: - |
|
71 |
0 |
@Override... |
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public void keyTyped(KeyEvent e) |
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{ |
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} |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
76 |
0 |
@Override... |
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public void keyReleased(KeyEvent e) |
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{ |
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0 |
refreshCutnPaste(true); |
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} |
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| - |
Uncovered Elements: 0 (0) |
Complexity: 1 |
Complexity Density: - |
|
82 |
0 |
@Override... |
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public void keyPressed(KeyEvent e) |
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{ |
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} |
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}); |
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panels.addChangeListener(new ChangeListener() |
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{ |
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Object lastComp; |
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| 0% |
Uncovered Elements: 7 (7) |
Complexity: 2 |
Complexity Density: 0.4 |
|
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0 |
@Override... |
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public void stateChanged(ChangeEvent e) |
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{ |
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0 |
if (lastComp != paste) |
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{ |
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updateServiceFromGui(); |
103 |
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refreshCutnPaste(false); |
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} |
105 |
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else |
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{ |
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refreshCutnPaste(true); |
108 |
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} |
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0 |
lastComp = panels.getSelectedComponent(); |
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} |
112 |
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}); |
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currentservice = new RestServiceDescription("Analysis", |
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"service description", "service name", "http://localhost/", "", |
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null, false, false, '-'); |
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initGuiWith(currentservice); |
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refreshCutnPaste(false); |
118 |
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updateButtons(); |
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} |
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| 0% |
Uncovered Elements: 10 (10) |
Complexity: 2 |
Complexity Density: 0.25 |
|
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public RestServiceEditorPane(RestServiceDescription toedit)... |
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{ |
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0 |
this(); |
124 |
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oldservice = toedit; |
125 |
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if (oldservice != null) |
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{ |
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currentservice = new RestServiceDescription(toedit); |
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} |
129 |
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else |
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{ |
131 |
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currentservice = new RestServiceDescription("Analysis", |
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"service description", "service name", "http://localhost/", |
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"", null, false, false, '-'); |
134 |
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} |
135 |
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initGuiWith(currentservice); |
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refreshCutnPaste(false); |
137 |
0 |
updateButtons(); |
138 |
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} |
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140 |
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142 |
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| 0% |
Uncovered Elements: 2 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
143 |
0 |
public void updateButtons()... |
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{ |
145 |
0 |
cancelButton.setEnabled(true); |
146 |
0 |
okButton.setEnabled(currentservice != null && currentservice.isValid()); |
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|
148 |
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} |
149 |
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150 |
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Vector<String> _iparam = new Vector<>(); |
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Vector<String> _rparam = new Vector<>(); |
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155 |
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156 |
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157 |
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@param |
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| 0% |
Uncovered Elements: 31 (31) |
Complexity: 2 |
Complexity Density: 0.07 |
|
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0 |
private void initGuiWith(RestServiceDescription currentservice)... |
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{ |
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_iparam.clear(); |
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_rparam.clear(); |
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action.removeAllItems(); |
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action.addItem("Alignment"); |
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action.addItem("Analysis"); |
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gapChar.removeAllItems(); |
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gapChar.addItem("."); |
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gapChar.addItem(" "); |
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gapChar.addItem("-"); |
171 |
0 |
if (currentservice == null) |
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{ |
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name.setText(""); |
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descr.setText(""); |
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url.setText(""); |
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urlsuff.setText(""); |
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action.setSelectedItem("Analysis"); |
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gapChar.setSelectedItem("-"); |
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} |
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else |
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{ |
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name.setText(currentservice.getName()); |
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descr.setText(currentservice.getDescription()); |
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url.setText(currentservice.getPostUrl()); |
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urlsuff.setText(currentservice.getUrlSuffix()); |
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for (Map.Entry<String, InputType> inparam : currentservice |
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.getInputParams().entrySet()) |
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{ |
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_iparam.add(inparam.getKey() + " " |
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+ inparam.getValue().getURLtokenPrefix() + ":" |
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+ inparam.getValue().getURLEncodedParameter().toString()); |
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} |
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194 |
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for (JvDataType oparam : currentservice.getResultDataTypes()) |
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{ |
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0 |
_rparam.add(oparam.name()); |
197 |
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} |
198 |
0 |
iprms.setListData(_iparam); |
199 |
0 |
rdata.setListData(_rparam); |
200 |
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0 |
action.setSelectedItem(currentservice.getAction()); |
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203 |
0 |
gapChar.setSelectedItem("" + currentservice.getGapCharacter()); |
204 |
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} |
205 |
0 |
revalidate(); |
206 |
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} |
207 |
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| 0% |
Uncovered Elements: 7 (7) |
Complexity: 2 |
Complexity Density: 0.4 |
|
208 |
0 |
private String getSelectedInputToken()... |
209 |
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{ |
210 |
0 |
if (iprms.getSelectedIndex() > -1) |
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{ |
212 |
0 |
String toktoedit = (String) iprms.getSelectedValue(); |
213 |
0 |
toktoedit = toktoedit.substring(0, toktoedit.indexOf(" ")); |
214 |
0 |
return toktoedit; |
215 |
|
} |
216 |
0 |
return null; |
217 |
|
} |
218 |
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| 0% |
Uncovered Elements: 13 (13) |
Complexity: 3 |
Complexity Density: 0.33 |
|
219 |
0 |
@Override... |
220 |
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protected void iprmListSelection_doubleClicked() |
221 |
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{ |
222 |
0 |
String toktoedit = getSelectedInputToken(); |
223 |
0 |
if (toktoedit != null) |
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{ |
225 |
0 |
InputType toedit = currentservice.getInputParams().get(toktoedit); |
226 |
0 |
String oldParam = toktoedit; |
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0 |
RestInputParamEditDialog dialog = new RestInputParamEditDialog(this, |
228 |
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currentservice, toedit); |
229 |
0 |
if (dialog.wasUpdated()) |
230 |
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{ |
231 |
0 |
currentservice.getInputParams().remove(oldParam); |
232 |
0 |
currentservice.getInputParams().put(dialog.current.token, |
233 |
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dialog.current); |
234 |
0 |
initGuiWith(currentservice); |
235 |
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} |
236 |
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|
237 |
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} |
238 |
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} |
239 |
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|
|
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| 0% |
Uncovered Elements: 6 (6) |
Complexity: 2 |
Complexity Density: 0.5 |
|
240 |
0 |
@Override... |
241 |
|
protected void iprmsAdd_actionPerformed(ActionEvent e) |
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{ |
243 |
0 |
RestInputParamEditDialog dialog = new RestInputParamEditDialog(this, |
244 |
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currentservice, |
245 |
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"param" + (1 + currentservice.getInputParams().size())); |
246 |
0 |
if (dialog.wasUpdated()) |
247 |
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{ |
248 |
0 |
currentservice.getInputParams().put(dialog.current.token, |
249 |
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dialog.current); |
250 |
0 |
initGuiWith(currentservice); |
251 |
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} |
252 |
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|
253 |
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} |
254 |
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|
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| 0% |
Uncovered Elements: 6 (6) |
Complexity: 2 |
Complexity Density: 0.5 |
|
255 |
0 |
@Override... |
256 |
|
protected void iprmsRem_actionPerformed(ActionEvent e) |
257 |
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{ |
258 |
0 |
String toktoedit = getSelectedInputToken(); |
259 |
0 |
if (toktoedit != null) |
260 |
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{ |
261 |
0 |
currentservice.getInputParams().remove(toktoedit); |
262 |
0 |
initGuiWith(currentservice); |
263 |
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|
264 |
|
} |
265 |
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} |
266 |
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| 0% |
Uncovered Elements: 8 (8) |
Complexity: 2 |
Complexity Density: 0.33 |
|
267 |
0 |
@Override... |
268 |
|
protected void rdata_rightClicked(MouseEvent mouse) |
269 |
|
{ |
270 |
0 |
final int rdatasel = rdata.getSelectedIndex(); |
271 |
0 |
if (rdatasel > -1) |
272 |
|
{ |
273 |
0 |
JPopupMenu popup = new JPopupMenu( |
274 |
|
MessageManager.getString("label.select_return_type")); |
275 |
0 |
for (final JvDataType type : JvDataType.values()) |
276 |
|
{ |
277 |
0 |
popup.add(new JMenuItem(type.name())) |
278 |
|
.addActionListener(new ActionListener() |
279 |
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{ |
280 |
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|
|
|
| 0% |
Uncovered Elements: 3 (3) |
Complexity: 1 |
Complexity Density: 0.33 |
|
281 |
0 |
@Override... |
282 |
|
public void actionPerformed(ActionEvent e) |
283 |
|
{ |
284 |
0 |
currentservice.getResultDataTypes().set(rdatasel, type); |
285 |
0 |
initGuiWith(currentservice); |
286 |
0 |
rdata.setSelectedIndex(rdatasel); |
287 |
|
} |
288 |
|
}); |
289 |
|
} |
290 |
0 |
popup.show(rdata, mouse.getX(), mouse.getY()); |
291 |
|
} |
292 |
|
} |
293 |
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|
|
|
| 0% |
Uncovered Elements: 10 (10) |
Complexity: 3 |
Complexity Density: 0.5 |
|
294 |
0 |
@Override... |
295 |
|
protected void rdataAdd_actionPerformed(ActionEvent e) |
296 |
|
{ |
297 |
0 |
int p; |
298 |
0 |
if ((p = rdata.getSelectedIndex()) > -1) |
299 |
|
{ |
300 |
0 |
currentservice.getResultDataTypes().add(p + 1, JvDataType.ANNOTATION); |
301 |
|
} |
302 |
|
else |
303 |
|
{ |
304 |
0 |
currentservice.addResultDatatype(JvDataType.ANNOTATION); |
305 |
|
} |
306 |
0 |
initGuiWith(currentservice); |
307 |
0 |
rdata.setSelectedIndex( |
308 |
0 |
p == -1 ? currentservice.getResultDataTypes().size() - 1 |
309 |
|
: p + 1); |
310 |
|
} |
311 |
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|
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|
| 0% |
Uncovered Elements: 10 (10) |
Complexity: 3 |
Complexity Density: 0.38 |
|
312 |
0 |
@Override... |
313 |
|
protected void rdataNdown_actionPerformed(ActionEvent e) |
314 |
|
{ |
315 |
0 |
int p; |
316 |
0 |
if ((p = rdata.getSelectedIndex()) > -1 && p < _rparam.size() - 1) |
317 |
|
{ |
318 |
0 |
List<JvDataType> rtypes = currentservice.getResultDataTypes(); |
319 |
0 |
JvDataType below = rtypes.get(p + 1); |
320 |
0 |
rtypes.set(p + 1, rtypes.get(p)); |
321 |
0 |
rtypes.set(p, below); |
322 |
0 |
initGuiWith(currentservice); |
323 |
0 |
rdata.setSelectedIndex(p + 1); |
324 |
|
} |
325 |
|
} |
326 |
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|
|
|
| 0% |
Uncovered Elements: 10 (10) |
Complexity: 2 |
Complexity Density: 0.25 |
|
327 |
0 |
@Override... |
328 |
|
protected void rdataNup_actionPerformed(ActionEvent e) |
329 |
|
{ |
330 |
0 |
int p; |
331 |
0 |
if ((p = rdata.getSelectedIndex()) > 0) |
332 |
|
{ |
333 |
0 |
List<JvDataType> rtypes = currentservice.getResultDataTypes(); |
334 |
0 |
JvDataType above = rtypes.get(p - 1); |
335 |
0 |
rtypes.set(p - 1, rtypes.get(p)); |
336 |
0 |
rtypes.set(p, above); |
337 |
0 |
initGuiWith(currentservice); |
338 |
0 |
rdata.setSelectedIndex(p - 1); |
339 |
|
} |
340 |
|
} |
341 |
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|
|
|
| 0% |
Uncovered Elements: 5 (5) |
Complexity: 2 |
Complexity Density: 0.67 |
|
342 |
0 |
@Override... |
343 |
|
protected void rdataRem_actionPerformed(ActionEvent e) |
344 |
|
{ |
345 |
0 |
if (rdata.getSelectedIndex() > -1) |
346 |
|
{ |
347 |
0 |
currentservice.getResultDataTypes().remove(rdata.getSelectedIndex()); |
348 |
0 |
initGuiWith(currentservice); |
349 |
|
} |
350 |
|
} |
351 |
|
|
|
|
| 0% |
Uncovered Elements: 28 (28) |
Complexity: 6 |
Complexity Density: 0.3 |
|
352 |
0 |
private boolean updateServiceFromGui()... |
353 |
|
{ |
354 |
0 |
Map<String, InputType> inputTypes = new HashMap<>(); |
355 |
0 |
StringBuffer warnings = new StringBuffer(); |
356 |
0 |
for (String its : _iparam) |
357 |
|
{ |
358 |
0 |
Matcher mtch = Pattern.compile("(\\S+)\\s(\\S+):\\[(.+)]") |
359 |
|
.matcher(its); |
360 |
0 |
if (mtch.find()) |
361 |
|
{ |
362 |
0 |
if (!RestServiceDescription.parseTypeString( |
363 |
|
mtch.group(2) + ":" + mtch.group(3), mtch.group(1), |
364 |
|
mtch.group(2), mtch.group(3), inputTypes, warnings)) |
365 |
|
{ |
366 |
0 |
jalview.bin.Console.errPrintln( |
367 |
|
"IMPLEMENTATION PROBLEM: Cannot parse RestService input parameter string '" |
368 |
|
+ its + "'" + "\n" + warnings); |
369 |
|
} |
370 |
|
} |
371 |
|
} |
372 |
0 |
char gc = gapChar.getSelectedItem() == null ? ' ' |
373 |
|
: ((String) gapChar.getSelectedItem()).charAt(0); |
374 |
0 |
RestServiceDescription newService = new RestServiceDescription( |
375 |
|
(String) action.getSelectedItem(), descr.getText().trim(), |
376 |
|
name.getText().trim(), url.getText().trim(), |
377 |
|
urlsuff.getText().trim(), inputTypes, hSeparable.isSelected(), |
378 |
|
vSeparable.isSelected(), gc); |
379 |
|
|
380 |
0 |
if (newService.isValid()) |
381 |
|
{ |
382 |
0 |
for (String its : _rparam) |
383 |
|
{ |
384 |
0 |
JvDataType dtype; |
385 |
0 |
try |
386 |
|
{ |
387 |
0 |
dtype = JvDataType.valueOf(its); |
388 |
0 |
newService.addResultDatatype(dtype); |
389 |
|
} catch (Throwable x) |
390 |
|
{ |
391 |
|
|
392 |
0 |
jalview.bin.Console.errPrintln( |
393 |
|
"IMPLEMENTATION PROBLEM: Cannot parse RestService output parameter string '" |
394 |
|
+ its + "'" + "\n" + warnings); |
395 |
|
} |
396 |
|
} |
397 |
0 |
currentservice = newService; |
398 |
0 |
return true; |
399 |
|
} |
400 |
|
else |
401 |
|
{ |
402 |
0 |
jalview.bin.Console.errPrintln( |
403 |
|
"IMPLEMENTATION PROBLEM: Restservice generated from GUI is invalid\n" |
404 |
|
+ warnings); |
405 |
|
|
406 |
|
} |
407 |
0 |
return false; |
408 |
|
} |
409 |
|
|
|
|
| 0% |
Uncovered Elements: 27 (27) |
Complexity: 7 |
Complexity Density: 0.37 |
|
410 |
0 |
protected void refreshCutnPaste(boolean reparse)... |
411 |
|
{ |
412 |
0 |
if (!reparse && currentservice.isValid()) |
413 |
|
{ |
414 |
0 |
urldesc.setText(currentservice.toString()); |
415 |
0 |
parseWarnings.setVisible(false); |
416 |
|
} |
417 |
|
else |
418 |
|
{ |
419 |
0 |
if (reparse) |
420 |
|
{ |
421 |
0 |
String txt = urldesc.getText().trim(); |
422 |
0 |
if (txt.length() > 0) |
423 |
|
{ |
424 |
0 |
RestServiceDescription rsd = null; |
425 |
0 |
try |
426 |
|
{ |
427 |
0 |
rsd = new RestServiceDescription(txt); |
428 |
0 |
if (rsd.isValid()) |
429 |
|
{ |
430 |
0 |
parseWarnings.setVisible(false); |
431 |
0 |
parseRes.setText(""); |
432 |
0 |
initGuiWith(currentservice = rsd); |
433 |
|
} |
434 |
|
else |
435 |
|
{ |
436 |
0 |
parseRes.setText(MessageManager.formatMessage( |
437 |
|
"label.parsing_failed_syntax_errors_shown_below_param", |
438 |
|
new String[] |
439 |
|
{ rsd.getInvalidMessage() })); |
440 |
0 |
parseWarnings.setVisible(true); |
441 |
|
} |
442 |
|
} catch (Throwable e) |
443 |
|
{ |
444 |
0 |
e.printStackTrace(); |
445 |
0 |
parseRes.setText(MessageManager.formatMessage( |
446 |
|
"label.parsing_failed_unrecoverable_exception_thrown_param", |
447 |
|
new String[] |
448 |
|
{ e.toString() })); |
449 |
0 |
parseWarnings.setVisible(true); |
450 |
|
} |
451 |
|
} |
452 |
0 |
paste.revalidate(); |
453 |
|
} |
454 |
|
} |
455 |
|
|
456 |
|
} |
457 |
|
|
458 |
|
|
459 |
|
|
460 |
|
@param |
461 |
|
|
|
|
| 0% |
Uncovered Elements: 4 (4) |
Complexity: 2 |
Complexity Density: 1 |
|
462 |
0 |
public static void main(String[] args)... |
463 |
|
{ |
464 |
0 |
if (args.length == 0) |
465 |
|
{ |
466 |
0 |
new Thread(new Runnable() |
467 |
|
{ |
468 |
|
boolean visible = true; |
469 |
|
|
|
|
| 0% |
Uncovered Elements: 19 (19) |
Complexity: 5 |
Complexity Density: 0.38 |
|
470 |
0 |
@Override... |
471 |
|
public void run() |
472 |
|
{ |
473 |
0 |
boolean nulserv = true; |
474 |
0 |
while (visible) |
475 |
|
{ |
476 |
0 |
final Thread runner = Thread.currentThread(); |
477 |
0 |
JFrame df = new JFrame(); |
478 |
0 |
df.getContentPane().setLayout(new BorderLayout()); |
479 |
0 |
df.getContentPane().add((nulserv = !nulserv) |
480 |
|
? new RestServiceEditorPane(jalview.ws.rest.RestClient |
481 |
|
.makeShmmrRestClient().getRestDescription()) |
482 |
|
: new RestServiceEditorPane(), BorderLayout.CENTER); |
483 |
0 |
df.setBounds(100, 100, 600, 400); |
484 |
0 |
df.addComponentListener(new ComponentListener() |
485 |
|
{ |
486 |
|
|
|
|
| - |
Uncovered Elements: 0 (0) |
Complexity: 1 |
Complexity Density: - |
|
487 |
0 |
@Override... |
488 |
|
public void componentShown(ComponentEvent e) |
489 |
|
{ |
490 |
|
|
491 |
|
} |
492 |
|
|
|
|
| - |
Uncovered Elements: 0 (0) |
Complexity: 1 |
Complexity Density: - |
|
493 |
0 |
@Override... |
494 |
|
public void componentResized(ComponentEvent e) |
495 |
|
{ |
496 |
|
|
497 |
|
} |
498 |
|
|
|
|
| - |
Uncovered Elements: 0 (0) |
Complexity: 1 |
Complexity Density: - |
|
499 |
0 |
@Override... |
500 |
|
public void componentMoved(ComponentEvent e) |
501 |
|
{ |
502 |
|
|
503 |
|
} |
504 |
|
|
|
|
| 0% |
Uncovered Elements: 2 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
505 |
0 |
@Override... |
506 |
|
public void componentHidden(ComponentEvent e) |
507 |
|
{ |
508 |
0 |
visible = false; |
509 |
0 |
runner.interrupt(); |
510 |
|
|
511 |
|
} |
512 |
|
}); |
513 |
0 |
df.setVisible(true); |
514 |
0 |
while (visible) |
515 |
|
{ |
516 |
0 |
try |
517 |
|
{ |
518 |
0 |
Thread.sleep(10000); |
519 |
|
} catch (Exception x) |
520 |
|
{ |
521 |
|
} |
522 |
|
} |
523 |
0 |
visible = true; |
524 |
|
} |
525 |
|
} |
526 |
|
}).start(); |
527 |
|
|
528 |
|
} |
529 |
|
} |
530 |
|
|
531 |
|
String finalService = null; |
532 |
|
|
|
|
| 0% |
Uncovered Elements: 12 (12) |
Complexity: 2 |
Complexity Density: 0.2 |
|
533 |
0 |
public void showDialog(String title)... |
534 |
|
{ |
535 |
0 |
if (oldservice != null) |
536 |
|
{ |
537 |
0 |
finalService = oldservice.toString(); |
538 |
|
} |
539 |
0 |
JalviewDialog jvd = new JalviewDialog() |
540 |
|
{ |
541 |
|
|
|
|
| - |
Uncovered Elements: 0 (0) |
Complexity: 1 |
Complexity Density: - |
|
542 |
0 |
@Override... |
543 |
|
protected void raiseClosed() |
544 |
|
{ |
545 |
|
|
546 |
|
|
547 |
|
} |
548 |
|
|
|
|
| 0% |
Uncovered Elements: 2 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
549 |
0 |
@Override... |
550 |
|
protected void okPressed() |
551 |
|
{ |
552 |
0 |
updateServiceFromGui(); |
553 |
0 |
finalService = currentservice.toString(); |
554 |
|
} |
555 |
|
|
|
|
| - |
Uncovered Elements: 0 (0) |
Complexity: 1 |
Complexity Density: - |
|
556 |
0 |
@Override... |
557 |
|
protected void cancelPressed() |
558 |
|
{ |
559 |
|
|
560 |
|
} |
561 |
|
}; |
562 |
0 |
JPanel pane = new JPanel(new BorderLayout()), |
563 |
|
okcancel = new JPanel(new FlowLayout()); |
564 |
0 |
pane.add(this, BorderLayout.CENTER); |
565 |
0 |
okcancel.add(jvd.ok); |
566 |
0 |
okcancel.add(jvd.cancel); |
567 |
0 |
pane.add(okcancel, BorderLayout.SOUTH); |
568 |
0 |
jvd.initDialogFrame(pane, true, true, title, 600, 350); |
569 |
0 |
jvd.waitForInput(); |
570 |
|
} |
571 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
572 |
0 |
public String getEditedRestService()... |
573 |
|
{ |
574 |
0 |
return finalService; |
575 |
|
} |
576 |
|
} |