Coverage Report
File ContactRange.java
Coverage histogram
29% of files have more coverage
Classes
| Class | Line # | Actions | |||
|---|---|---|---|---|---|
| ContactRange | 29 | 21 | 15 |
Contributing tests
This file is covered by 10 tests.
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Source view
| 1 | /* | |
| 2 | * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) | |
| 3 | * Copyright (C) $$Year-Rel$$ The Jalview Authors | |
| 4 | * | |
| 5 | * This file is part of Jalview. | |
| 6 | * | |
| 7 | * Jalview is free software: you can redistribute it and/or | |
| 8 | * modify it under the terms of the GNU General Public License | |
| 9 | * as published by the Free Software Foundation, either version 3 | |
| 10 | * of the License, or (at your option) any later version. | |
| 11 | * | |
| 12 | * Jalview is distributed in the hope that it will be useful, but | |
| 13 | * WITHOUT ANY WARRANTY; without even the implied warranty | |
| 14 | * of MERCHANTABILITY or FITNESS FOR A PARTICULAR | |
| 15 | * PURPOSE. See the GNU General Public License for more details. | |
| 16 | * | |
| 17 | * You should have received a copy of the GNU General Public License | |
| 18 | * along with Jalview. If not, see <http://www.gnu.org/licenses/>. | |
| 19 | * The Jalview Authors are detailed in the 'AUTHORS' file. | |
| 20 | */ | |
| 21 | package jalview.datamodel; | |
| 22 | ||
| 23 | /** | |
| 24 | * bean for max/min positions for a given range | |
| 25 | * | |
| 26 | * @author jprocter | |
| 27 | * | |
| 28 | */ | |
| 29 | public class ContactRange | |
| 30 | { | |
| 31 | int minPos; | |
| 32 | ||
| 33 | double min; | |
| 34 | ||
| 35 | int maxPos; | |
| 36 | ||
| 37 | double max; | |
| 38 | ||
| 39 | int from_column, to_column; | |
| 40 | ||
| 41 | private double mean; | |
| 42 | ||
| 43 | /** | |
| 44 | * update the bean with given values | |
| 45 | * | |
| 46 | * @param from_column | |
| 47 | * @param to_column | |
| 48 | * @param minPos | |
| 49 | * @param min | |
| 50 | * @param maxPos | |
| 51 | * @param max | |
| 52 | */ | |
| 53 | 0 |  public void update(int from_column, int to_column, int minPos, double min, |
| 54 | int maxPos, double max, double mean) | |
| 55 | { | |
| 56 | 0 | this.from_column = from_column; |
| 57 | 0 | this.to_column = to_column; |
| 58 | 0 | this.minPos = minPos; |
| 59 | 0 | this.min = min; |
| 60 | 0 | this.maxPos = maxPos; |
| 61 | 0 | this.max = max; |
| 62 | 0 | this.mean = mean; |
| 63 | } | |
| 64 | ||
| 65 | /** | |
| 66 | * @return the minPos | |
| 67 | */ | |
| 68 | 0 | public int getMinPos() |
| 69 | { | |
| 70 | 0 | return minPos; |
| 71 | } | |
| 72 | ||
| 73 | /** | |
| 74 | * @param minPos | |
| 75 | * the minPos to set | |
| 76 | */ | |
| 77 | 209324 | public void setMinPos(int minPos) |
| 78 | { | |
| 79 | 209324 | this.minPos = minPos; |
| 80 | } | |
| 81 | ||
| 82 | /** | |
| 83 | * @return the min | |
| 84 | */ | |
| 85 | 289747 | public double getMin() |
| 86 | { | |
| 87 | 289747 | return min; |
| 88 | } | |
| 89 | ||
| 90 | /** | |
| 91 | * @param min | |
| 92 | * the min to set | |
| 93 | */ | |
| 94 | 209327 | public void setMin(double min) |
| 95 | { | |
| 96 | 209327 | this.min = min; |
| 97 | } | |
| 98 | ||
| 99 | /** | |
| 100 | * @return the maxPos | |
| 101 | */ | |
| 102 | 0 | public int getMaxPos() |
| 103 | { | |
| 104 | 0 | return maxPos; |
| 105 | } | |
| 106 | ||
| 107 | /** | |
| 108 | * @param maxPos | |
| 109 | * the maxPos to set | |
| 110 | */ | |
| 111 | 209318 | public void setMaxPos(int maxPos) |
| 112 | { | |
| 113 | 209320 | this.maxPos = maxPos; |
| 114 | } | |
| 115 | ||
| 116 | /** | |
| 117 | * @return the max | |
| 118 | */ | |
| 119 | 289761 | public double getMax() |
| 120 | { | |
| 121 | 289761 | return max; |
| 122 | } | |
| 123 | ||
| 124 | /** | |
| 125 | * @param max | |
| 126 | * the max to set | |
| 127 | */ | |
| 128 | 209318 | public void setMax(double max) |
| 129 | { | |
| 130 | 209319 | this.max = max; |
| 131 | } | |
| 132 | ||
| 133 | /** | |
| 134 | * @return the mean | |
| 135 | */ | |
| 136 | 142515 | public double getMean() |
| 137 | { | |
| 138 | 142515 | return mean; |
| 139 | } | |
| 140 | ||
| 141 | /** | |
| 142 | * @param mean | |
| 143 | * the mean to set | |
| 144 | */ | |
| 145 | 142515 | public void setMean(double mean) |
| 146 | { | |
| 147 | 142515 | this.mean = mean; |
| 148 | } | |
| 149 | ||
| 150 | /** | |
| 151 | * @return the from_column | |
| 152 | */ | |
| 153 | 160 | public int getFrom_column() |
| 154 | { | |
| 155 | 160 | return from_column; |
| 156 | } | |
| 157 | ||
| 158 | /** | |
| 159 | * @param from_column | |
| 160 | * the from_column to set | |
| 161 | */ | |
| 162 | 142515 | public void setFrom_column(int from_column) |
| 163 | { | |
| 164 | 142515 | this.from_column = from_column; |
| 165 | } | |
| 166 | ||
| 167 | /** | |
| 168 | * @return the to_column | |
| 169 | */ | |
| 170 | 80 | public int getTo_column() |
| 171 | { | |
| 172 | 80 | return to_column; |
| 173 | } | |
| 174 | ||
| 175 | /** | |
| 176 | * @param to_column | |
| 177 | * the to_column to set | |
| 178 | */ | |
| 179 | 142513 | public void setTo_column(int to_column) |
| 180 | { | |
| 181 | 142513 | this.to_column = to_column; |
| 182 | } | |
| 183 | } |