Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
SeqSearchResult	23	40	21	0.00%	Show methods

Class SeqSearchResult

Class SeqSearchResult	Line # 23	Total Statements 40	Complexity 21	TOTAL Coverage 0.00%
SeqSearchResult()   SeqSearchResult()	3434	0.00	1.01	-1.0 -1.0 -
SeqSearchResult(vamsas.objects.simple.Alignment,java.lang.String,java.lang.String,java.lang.String)   SeqSearchResult(vamsas.objects.simple.Alignment,java.lang.String,java.lang.String,java.lang.String)	3838	4.04	1.01	0.0 0.00%
getAlignment() : vamsas.objects.simple.Alignment   getAlignment() : vamsas.objects.simple.Alignment	5353	1.01	1.01	0.0 0.00%
setAlignment(vamsas.objects.simple.Alignment) : void   setAlignment(vamsas.objects.simple.Alignment) : void	6363	1.01	1.01	0.0 0.00%
getAnnotation() : java.lang.String   getAnnotation() : java.lang.String	7373	1.01	1.01	0.0 0.00%
setAnnotation(java.lang.String) : void   setAnnotation(java.lang.String) : void	8383	1.01	1.01	0.0 0.00%
getFeatures() : java.lang.String   getFeatures() : java.lang.String	9393	1.01	1.01	0.0 0.00%
setFeatures(java.lang.String) : void   setFeatures(java.lang.String) : void	103103	1.01	1.01	0.0 0.00%
getNewickTree() : java.lang.String   getNewickTree() : java.lang.String	113113	1.01	1.01	0.0 0.00%
setNewickTree(java.lang.String) : void   setNewickTree(java.lang.String) : void	123123	1.01	1.01	0.0 0.00%
equals(java.lang.Object) : boolean   equals(java.lang.Object) : boolean	130130	14.014	5.05	0.0 0.00%
hashCode() : int   hashCode() : int	171171	14.014	6.06	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package vamsas.objects.simple;
22
		0% Uncovered Elements: 70 (70) Complexity: 21 Complexity Density: 0.52
23		public class SeqSearchResult extends vamsas.objects.simple.Result
24		implements java.io.Serializable
25		{
26		private vamsas.objects.simple.Alignment alignment;
27
28		private java.lang.String annotation;
29
30		private java.lang.String features;
31
32		private java.lang.String newickTree;
33
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
34	0	public SeqSearchResult()...
35		{
36		}
37
		0% Uncovered Elements: 4 (4) Complexity: 1 Complexity Density: 0.25
38	0	public SeqSearchResult(vamsas.objects.simple.Alignment alignment,...
39		java.lang.String annotation, java.lang.String features,
40		java.lang.String newickTree)
41		{
42	0	this.alignment = alignment;
43	0	this.annotation = annotation;
44	0	this.features = features;
45	0	this.newickTree = newickTree;
46		}
47
48		/**
49		* Gets the alignment value for this SeqSearchResult.
50		*
51		* @return alignment
52		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
53	0	public vamsas.objects.simple.Alignment getAlignment()...
54		{
55	0	return alignment;
56		}
57
58		/**
59		* Sets the alignment value for this SeqSearchResult.
60		*
61		* @param alignment
62		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
63	0	public void setAlignment(vamsas.objects.simple.Alignment alignment)...
64		{
65	0	this.alignment = alignment;
66		}
67
68		/**
69		* Gets the annotation value for this SeqSearchResult.
70		*
71		* @return annotation
72		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
73	0	public java.lang.String getAnnotation()...
74		{
75	0	return annotation;
76		}
77
78		/**
79		* Sets the annotation value for this SeqSearchResult.
80		*
81		* @param annotation
82		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
83	0	public void setAnnotation(java.lang.String annotation)...
84		{
85	0	this.annotation = annotation;
86		}
87
88		/**
89		* Gets the features value for this SeqSearchResult.
90		*
91		* @return features
92		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
93	0	public java.lang.String getFeatures()...
94		{
95	0	return features;
96		}
97
98		/**
99		* Sets the features value for this SeqSearchResult.
100		*
101		* @param features
102		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
103	0	public void setFeatures(java.lang.String features)...
104		{
105	0	this.features = features;
106		}
107
108		/**
109		* Gets the newickTree value for this SeqSearchResult.
110		*
111		* @return newickTree
112		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
113	0	public java.lang.String getNewickTree()...
114		{
115	0	return newickTree;
116		}
117
118		/**
119		* Sets the newickTree value for this SeqSearchResult.
120		*
121		* @param newickTree
122		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
123	0	public void setNewickTree(java.lang.String newickTree)...
124		{
125	0	this.newickTree = newickTree;
126		}
127
128		private java.lang.Object __equalsCalc = null;
129
		0% Uncovered Elements: 22 (22) Complexity: 5 Complexity Density: 0.36
130	0	@Override...
131		public synchronized boolean equals(java.lang.Object obj)
132		{
133	0	if (obj == null)
134		{
135	0	return false;
136		}
137	0	if (!(obj instanceof SeqSearchResult))
138		{
139	0	return false;
140		}
141	0	SeqSearchResult other = (SeqSearchResult) obj;
142	0	if (this == obj)
143		{
144	0	return true;
145		}
146	0	if (__equalsCalc != null)
147		{
148	0	return (__equalsCalc == obj);
149		}
150	0	__equalsCalc = obj;
151	0	boolean _equals;
152	0	_equals = super.equals(obj)
153		&& ((this.alignment == null && other.getAlignment() == null)
154		|| (this.alignment != null
155		&& this.alignment.equals(other.getAlignment())))
156		&& ((this.annotation == null && other.getAnnotation() == null)
157		|| (this.annotation != null && this.annotation
158		.equals(other.getAnnotation())))
159		&& ((this.features == null && other.getFeatures() == null)
160		|| (this.features != null
161		&& this.features.equals(other.getFeatures())))
162		&& ((this.newickTree == null && other.getNewickTree() == null)
163		|| (this.newickTree != null && this.newickTree
164		.equals(other.getNewickTree())));
165	0	__equalsCalc = null;
166	0	return _equals;
167		}
168
169		private boolean __hashCodeCalc = false;
170
		0% Uncovered Elements: 24 (24) Complexity: 6 Complexity Density: 0.43
171	0	@Override...
172		public synchronized int hashCode()
173		{
174	0	if (__hashCodeCalc)
175		{
176	0	return 0;
177		}
178	0	__hashCodeCalc = true;
179	0	int _hashCode = super.hashCode();
180	0	if (getAlignment() != null)
181		{
182	0	_hashCode += getAlignment().hashCode();
183		}
184	0	if (getAnnotation() != null)
185		{
186	0	_hashCode += getAnnotation().hashCode();
187		}
188	0	if (getFeatures() != null)
189		{
190	0	_hashCode += getFeatures().hashCode();
191		}
192	0	if (getNewickTree() != null)
193		{
194	0	_hashCode += getNewickTree().hashCode();
195		}
196	0	__hashCodeCalc = false;
197	0	return _hashCode;
198		}
199
200		}