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1 | // | |
2 | // This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 | |
3 | // See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a> | |
4 | // Any modifications to this file will be lost upon recompilation of the source schema. | |
5 | // Generated on: 2023.05.13 at 06:58:42 PM BST | |
6 | // | |
7 | ||
8 | package jalview.xml.binding.uniprot; | |
9 | ||
10 | import java.util.ArrayList; | |
11 | import java.util.List; | |
12 | import javax.xml.bind.annotation.XmlAccessType; | |
13 | import javax.xml.bind.annotation.XmlAccessorType; | |
14 | import javax.xml.bind.annotation.XmlAttribute; | |
15 | import javax.xml.bind.annotation.XmlElement; | |
16 | import javax.xml.bind.annotation.XmlRootElement; | |
17 | import javax.xml.bind.annotation.XmlSchemaType; | |
18 | import javax.xml.bind.annotation.XmlType; | |
19 | import javax.xml.datatype.XMLGregorianCalendar; | |
20 | ||
21 | /** | |
22 | * <p> | |
23 | * Java class for anonymous complex type. | |
24 | * | |
25 | * <p> | |
26 | * The following schema fragment specifies the expected content contained within | |
27 | * this class. | |
28 | * | |
29 | * <pre> | |
30 | * <complexType> | |
31 | * <complexContent> | |
32 | * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType"> | |
33 | * <sequence> | |
34 | * <element name="accession" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded"/> | |
35 | * <element name="name" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded"/> | |
36 | * <element name="protein" type="{http://uniprot.org/uniprot}proteinType"/> | |
37 | * <element name="gene" type="{http://uniprot.org/uniprot}geneType" maxOccurs="unbounded" minOccurs="0"/> | |
38 | * <element name="organism" type="{http://uniprot.org/uniprot}organismType"/> | |
39 | * <element name="organismHost" type="{http://uniprot.org/uniprot}organismType" maxOccurs="unbounded" minOccurs="0"/> | |
40 | * <element name="geneLocation" type="{http://uniprot.org/uniprot}geneLocationType" maxOccurs="unbounded" minOccurs="0"/> | |
41 | * <element name="reference" type="{http://uniprot.org/uniprot}referenceType" maxOccurs="unbounded"/> | |
42 | * <element name="comment" type="{http://uniprot.org/uniprot}commentType" maxOccurs="unbounded" minOccurs="0"/> | |
43 | * <element name="dbReference" type="{http://uniprot.org/uniprot}dbReferenceType" maxOccurs="unbounded" minOccurs="0"/> | |
44 | * <element name="proteinExistence" type="{http://uniprot.org/uniprot}proteinExistenceType"/> | |
45 | * <element name="keyword" type="{http://uniprot.org/uniprot}keywordType" maxOccurs="unbounded" minOccurs="0"/> | |
46 | * <element name="feature" type="{http://uniprot.org/uniprot}featureType" maxOccurs="unbounded" minOccurs="0"/> | |
47 | * <element name="evidence" type="{http://uniprot.org/uniprot}evidenceType" maxOccurs="unbounded" minOccurs="0"/> | |
48 | * <element name="sequence" type="{http://uniprot.org/uniprot}sequenceType"/> | |
49 | * </sequence> | |
50 | * <attribute name="dataset" use="required"> | |
51 | * <simpleType> | |
52 | * <restriction base="{http://www.w3.org/2001/XMLSchema}string"> | |
53 | * <enumeration value="Swiss-Prot"/> | |
54 | * <enumeration value="TrEMBL"/> | |
55 | * </restriction> | |
56 | * </simpleType> | |
57 | * </attribute> | |
58 | * <attribute name="created" use="required" type="{http://www.w3.org/2001/XMLSchema}date" /> | |
59 | * <attribute name="modified" use="required" type="{http://www.w3.org/2001/XMLSchema}date" /> | |
60 | * <attribute name="version" use="required" type="{http://www.w3.org/2001/XMLSchema}int" /> | |
61 | * </restriction> | |
62 | * </complexContent> | |
63 | * </complexType> | |
64 | * </pre> | |
65 | * | |
66 | * | |
67 | */ | |
68 | @XmlAccessorType(XmlAccessType.FIELD) | |
69 | @XmlType( | |
70 | name = "", | |
71 | propOrder = | |
72 | { "accession", "name", "protein", "gene", "organism", "organismHost", | |
73 | "geneLocation", "reference", "comment", "dbReference", | |
74 | "proteinExistence", "keyword", "feature", "evidence", "sequence" }) | |
75 | @XmlRootElement(name = "entry") | |
76 | public class Entry | |
77 | { | |
78 | ||
79 | @XmlElement(required = true) | |
80 | protected List<String> accession; | |
81 | ||
82 | @XmlElement(required = true) | |
83 | protected List<String> name; | |
84 | ||
85 | @XmlElement(required = true) | |
86 | protected ProteinType protein; | |
87 | ||
88 | protected List<GeneType> gene; | |
89 | ||
90 | @XmlElement(required = true) | |
91 | protected OrganismType organism; | |
92 | ||
93 | protected List<OrganismType> organismHost; | |
94 | ||
95 | protected List<GeneLocationType> geneLocation; | |
96 | ||
97 | @XmlElement(required = true) | |
98 | protected List<ReferenceType> reference; | |
99 | ||
100 | @XmlElement(nillable = true) | |
101 | protected List<CommentType> comment; | |
102 | ||
103 | protected List<DbReferenceType> dbReference; | |
104 | ||
105 | @XmlElement(required = true) | |
106 | protected ProteinExistenceType proteinExistence; | |
107 | ||
108 | protected List<KeywordType> keyword; | |
109 | ||
110 | protected List<FeatureType> feature; | |
111 | ||
112 | protected List<EvidenceType> evidence; | |
113 | ||
114 | @XmlElement(required = true) | |
115 | protected SequenceType sequence; | |
116 | ||
117 | @XmlAttribute(name = "dataset", required = true) | |
118 | protected String dataset; | |
119 | ||
120 | @XmlAttribute(name = "created", required = true) | |
121 | @XmlSchemaType(name = "date") | |
122 | protected XMLGregorianCalendar created; | |
123 | ||
124 | @XmlAttribute(name = "modified", required = true) | |
125 | @XmlSchemaType(name = "date") | |
126 | protected XMLGregorianCalendar modified; | |
127 | ||
128 | @XmlAttribute(name = "version", required = true) | |
129 | protected int version; | |
130 | ||
131 | /** | |
132 | * Gets the value of the accession property. | |
133 | * | |
134 | * <p> | |
135 | * This accessor method returns a reference to the live list, not a snapshot. | |
136 | * Therefore any modification you make to the returned list will be present | |
137 | * inside the JAXB object. This is why there is not a <CODE>set</CODE> method | |
138 | * for the accession property. | |
139 | * | |
140 | * <p> | |
141 | * For example, to add a new item, do as follows: | |
142 | * | |
143 | * <pre> | |
144 | * getAccession().add(newItem); | |
145 | * </pre> | |
146 | * | |
147 | * | |
148 | * <p> | |
149 | * Objects of the following type(s) are allowed in the list {@link String } | |
150 | * | |
151 | * | |
152 | */ | |
153 | 5 | public List<String> getAccession() |
154 | { | |
155 | 5 | if (accession == null) |
156 | { | |
157 | 0 | accession = new ArrayList<String>(); |
158 | } | |
159 | 5 | return this.accession; |
160 | } | |
161 | ||
162 | /** | |
163 | * Gets the value of the name property. | |
164 | * | |
165 | * <p> | |
166 | * This accessor method returns a reference to the live list, not a snapshot. | |
167 | * Therefore any modification you make to the returned list will be present | |
168 | * inside the JAXB object. This is why there is not a <CODE>set</CODE> method | |
169 | * for the name property. | |
170 | * | |
171 | * <p> | |
172 | * For example, to add a new item, do as follows: | |
173 | * | |
174 | * <pre> | |
175 | * getName().add(newItem); | |
176 | * </pre> | |
177 | * | |
178 | * | |
179 | * <p> | |
180 | * Objects of the following type(s) are allowed in the list {@link String } | |
181 | * | |
182 | * | |
183 | */ | |
184 | 6 | public List<String> getName() |
185 | { | |
186 | 6 | if (name == null) |
187 | { | |
188 | 0 | name = new ArrayList<String>(); |
189 | } | |
190 | 6 | return this.name; |
191 | } | |
192 | ||
193 | /** | |
194 | * Gets the value of the protein property. | |
195 | * | |
196 | * @return possible object is {@link ProteinType } | |
197 | * | |
198 | */ | |
199 | 10 | public ProteinType getProtein() |
200 | { | |
201 | 10 | return protein; |
202 | } | |
203 | ||
204 | /** | |
205 | * Sets the value of the protein property. | |
206 | * | |
207 | * @param value | |
208 | * allowed object is {@link ProteinType } | |
209 | * | |
210 | */ | |
211 | 0 | public void setProtein(ProteinType value) |
212 | { | |
213 | 0 | this.protein = value; |
214 | } | |
215 | ||
216 | /** | |
217 | * Gets the value of the gene property. | |
218 | * | |
219 | * <p> | |
220 | * This accessor method returns a reference to the live list, not a snapshot. | |
221 | * Therefore any modification you make to the returned list will be present | |
222 | * inside the JAXB object. This is why there is not a <CODE>set</CODE> method | |
223 | * for the gene property. | |
224 | * | |
225 | * <p> | |
226 | * For example, to add a new item, do as follows: | |
227 | * | |
228 | * <pre> | |
229 | * getGene().add(newItem); | |
230 | * </pre> | |
231 | * | |
232 | * | |
233 | * <p> | |
234 | * Objects of the following type(s) are allowed in the list {@link GeneType } | |
235 | * | |
236 | * | |
237 | */ | |
238 | 0 | public List<GeneType> getGene() |
239 | { | |
240 | 0 | if (gene == null) |
241 | { | |
242 | 0 | gene = new ArrayList<GeneType>(); |
243 | } | |
244 | 0 | return this.gene; |
245 | } | |
246 | ||
247 | /** | |
248 | * Gets the value of the organism property. | |
249 | * | |
250 | * @return possible object is {@link OrganismType } | |
251 | * | |
252 | */ | |
253 | 0 | public OrganismType getOrganism() |
254 | { | |
255 | 0 | return organism; |
256 | } | |
257 | ||
258 | /** | |
259 | * Sets the value of the organism property. | |
260 | * | |
261 | * @param value | |
262 | * allowed object is {@link OrganismType } | |
263 | * | |
264 | */ | |
265 | 0 | public void setOrganism(OrganismType value) |
266 | { | |
267 | 0 | this.organism = value; |
268 | } | |
269 | ||
270 | /** | |
271 | * Gets the value of the organismHost property. | |
272 | * | |
273 | * <p> | |
274 | * This accessor method returns a reference to the live list, not a snapshot. | |
275 | * Therefore any modification you make to the returned list will be present | |
276 | * inside the JAXB object. This is why there is not a <CODE>set</CODE> method | |
277 | * for the organismHost property. | |
278 | * | |
279 | * <p> | |
280 | * For example, to add a new item, do as follows: | |
281 | * | |
282 | * <pre> | |
283 | * getOrganismHost().add(newItem); | |
284 | * </pre> | |
285 | * | |
286 | * | |
287 | * <p> | |
288 | * Objects of the following type(s) are allowed in the list | |
289 | * {@link OrganismType } | |
290 | * | |
291 | * | |
292 | */ | |
293 | 0 | public List<OrganismType> getOrganismHost() |
294 | { | |
295 | 0 | if (organismHost == null) |
296 | { | |
297 | 0 | organismHost = new ArrayList<OrganismType>(); |
298 | } | |
299 | 0 | return this.organismHost; |
300 | } | |
301 | ||
302 | /** | |
303 | * Gets the value of the geneLocation property. | |
304 | * | |
305 | * <p> | |
306 | * This accessor method returns a reference to the live list, not a snapshot. | |
307 | * Therefore any modification you make to the returned list will be present | |
308 | * inside the JAXB object. This is why there is not a <CODE>set</CODE> method | |
309 | * for the geneLocation property. | |
310 | * | |
311 | * <p> | |
312 | * For example, to add a new item, do as follows: | |
313 | * | |
314 | * <pre> | |
315 | * getGeneLocation().add(newItem); | |
316 | * </pre> | |
317 | * | |
318 | * | |
319 | * <p> | |
320 | * Objects of the following type(s) are allowed in the list | |
321 | * {@link GeneLocationType } | |
322 | * | |
323 | * | |
324 | */ | |
325 | 0 | public List<GeneLocationType> getGeneLocation() |
326 | { | |
327 | 0 | if (geneLocation == null) |
328 | { | |
329 | 0 | geneLocation = new ArrayList<GeneLocationType>(); |
330 | } | |
331 | 0 | return this.geneLocation; |
332 | } | |
333 | ||
334 | /** | |
335 | * Gets the value of the reference property. | |
336 | * | |
337 | * <p> | |
338 | * This accessor method returns a reference to the live list, not a snapshot. | |
339 | * Therefore any modification you make to the returned list will be present | |
340 | * inside the JAXB object. This is why there is not a <CODE>set</CODE> method | |
341 | * for the reference property. | |
342 | * | |
343 | * <p> | |
344 | * For example, to add a new item, do as follows: | |
345 | * | |
346 | * <pre> | |
347 | * getReference().add(newItem); | |
348 | * </pre> | |
349 | * | |
350 | * | |
351 | * <p> | |
352 | * Objects of the following type(s) are allowed in the list | |
353 | * {@link ReferenceType } | |
354 | * | |
355 | * | |
356 | */ | |
357 | 0 | public List<ReferenceType> getReference() |
358 | { | |
359 | 0 | if (reference == null) |
360 | { | |
361 | 0 | reference = new ArrayList<ReferenceType>(); |
362 | } | |
363 | 0 | return this.reference; |
364 | } | |
365 | ||
366 | /** | |
367 | * Gets the value of the comment property. | |
368 | * | |
369 | * <p> | |
370 | * This accessor method returns a reference to the live list, not a snapshot. | |
371 | * Therefore any modification you make to the returned list will be present | |
372 | * inside the JAXB object. This is why there is not a <CODE>set</CODE> method | |
373 | * for the comment property. | |
374 | * | |
375 | * <p> | |
376 | * For example, to add a new item, do as follows: | |
377 | * | |
378 | * <pre> | |
379 | * getComment().add(newItem); | |
380 | * </pre> | |
381 | * | |
382 | * | |
383 | * <p> | |
384 | * Objects of the following type(s) are allowed in the list {@link CommentType | |
385 | * } | |
386 | * | |
387 | * | |
388 | */ | |
389 | 0 | public List<CommentType> getComment() |
390 | { | |
391 | 0 | if (comment == null) |
392 | { | |
393 | 0 | comment = new ArrayList<CommentType>(); |
394 | } | |
395 | 0 | return this.comment; |
396 | } | |
397 | ||
398 | /** | |
399 | * Gets the value of the dbReference property. | |
400 | * | |
401 | * <p> | |
402 | * This accessor method returns a reference to the live list, not a snapshot. | |
403 | * Therefore any modification you make to the returned list will be present | |
404 | * inside the JAXB object. This is why there is not a <CODE>set</CODE> method | |
405 | * for the dbReference property. | |
406 | * | |
407 | * <p> | |
408 | * For example, to add a new item, do as follows: | |
409 | * | |
410 | * <pre> | |
411 | * getDbReference().add(newItem); | |
412 | * </pre> | |
413 | * | |
414 | * | |
415 | * <p> | |
416 | * Objects of the following type(s) are allowed in the list | |
417 | * {@link DbReferenceType } | |
418 | * | |
419 | * | |
420 | */ | |
421 | 3 | public List<DbReferenceType> getDbReference() |
422 | { | |
423 | 3 | if (dbReference == null) |
424 | { | |
425 | 0 | dbReference = new ArrayList<DbReferenceType>(); |
426 | } | |
427 | 3 | return this.dbReference; |
428 | } | |
429 | ||
430 | /** | |
431 | * Gets the value of the proteinExistence property. | |
432 | * | |
433 | * @return possible object is {@link ProteinExistenceType } | |
434 | * | |
435 | */ | |
436 | 0 | public ProteinExistenceType getProteinExistence() |
437 | { | |
438 | 0 | return proteinExistence; |
439 | } | |
440 | ||
441 | /** | |
442 | * Sets the value of the proteinExistence property. | |
443 | * | |
444 | * @param value | |
445 | * allowed object is {@link ProteinExistenceType } | |
446 | * | |
447 | */ | |
448 | 0 | public void setProteinExistence(ProteinExistenceType value) |
449 | { | |
450 | 0 | this.proteinExistence = value; |
451 | } | |
452 | ||
453 | /** | |
454 | * Gets the value of the keyword property. | |
455 | * | |
456 | * <p> | |
457 | * This accessor method returns a reference to the live list, not a snapshot. | |
458 | * Therefore any modification you make to the returned list will be present | |
459 | * inside the JAXB object. This is why there is not a <CODE>set</CODE> method | |
460 | * for the keyword property. | |
461 | * | |
462 | * <p> | |
463 | * For example, to add a new item, do as follows: | |
464 | * | |
465 | * <pre> | |
466 | * getKeyword().add(newItem); | |
467 | * </pre> | |
468 | * | |
469 | * | |
470 | * <p> | |
471 | * Objects of the following type(s) are allowed in the list {@link KeywordType | |
472 | * } | |
473 | * | |
474 | * | |
475 | */ | |
476 | 0 | public List<KeywordType> getKeyword() |
477 | { | |
478 | 0 | if (keyword == null) |
479 | { | |
480 | 0 | keyword = new ArrayList<KeywordType>(); |
481 | } | |
482 | 0 | return this.keyword; |
483 | } | |
484 | ||
485 | /** | |
486 | * Gets the value of the feature property. | |
487 | * | |
488 | * <p> | |
489 | * This accessor method returns a reference to the live list, not a snapshot. | |
490 | * Therefore any modification you make to the returned list will be present | |
491 | * inside the JAXB object. This is why there is not a <CODE>set</CODE> method | |
492 | * for the feature property. | |
493 | * | |
494 | * <p> | |
495 | * For example, to add a new item, do as follows: | |
496 | * | |
497 | * <pre> | |
498 | * getFeature().add(newItem); | |
499 | * </pre> | |
500 | * | |
501 | * | |
502 | * <p> | |
503 | * Objects of the following type(s) are allowed in the list {@link FeatureType | |
504 | * } | |
505 | * | |
506 | * | |
507 | */ | |
508 | 5 | public List<FeatureType> getFeature() |
509 | { | |
510 | 5 | if (feature == null) |
511 | { | |
512 | 0 | feature = new ArrayList<FeatureType>(); |
513 | } | |
514 | 5 | return this.feature; |
515 | } | |
516 | ||
517 | /** | |
518 | * Gets the value of the evidence property. | |
519 | * | |
520 | * <p> | |
521 | * This accessor method returns a reference to the live list, not a snapshot. | |
522 | * Therefore any modification you make to the returned list will be present | |
523 | * inside the JAXB object. This is why there is not a <CODE>set</CODE> method | |
524 | * for the evidence property. | |
525 | * | |
526 | * <p> | |
527 | * For example, to add a new item, do as follows: | |
528 | * | |
529 | * <pre> | |
530 | * getEvidence().add(newItem); | |
531 | * </pre> | |
532 | * | |
533 | * | |
534 | * <p> | |
535 | * Objects of the following type(s) are allowed in the list | |
536 | * {@link EvidenceType } | |
537 | * | |
538 | * | |
539 | */ | |
540 | 0 | public List<EvidenceType> getEvidence() |
541 | { | |
542 | 0 | if (evidence == null) |
543 | { | |
544 | 0 | evidence = new ArrayList<EvidenceType>(); |
545 | } | |
546 | 0 | return this.evidence; |
547 | } | |
548 | ||
549 | /** | |
550 | * Gets the value of the sequence property. | |
551 | * | |
552 | * @return possible object is {@link SequenceType } | |
553 | * | |
554 | */ | |
555 | 3 | public SequenceType getSequence() |
556 | { | |
557 | 3 | return sequence; |
558 | } | |
559 | ||
560 | /** | |
561 | * Sets the value of the sequence property. | |
562 | * | |
563 | * @param value | |
564 | * allowed object is {@link SequenceType } | |
565 | * | |
566 | */ | |
567 | 0 | public void setSequence(SequenceType value) |
568 | { | |
569 | 0 | this.sequence = value; |
570 | } | |
571 | ||
572 | /** | |
573 | * Gets the value of the dataset property. | |
574 | * | |
575 | * @return possible object is {@link String } | |
576 | * | |
577 | */ | |
578 | 0 | public String getDataset() |
579 | { | |
580 | 0 | return dataset; |
581 | } | |
582 | ||
583 | /** | |
584 | * Sets the value of the dataset property. | |
585 | * | |
586 | * @param value | |
587 | * allowed object is {@link String } | |
588 | * | |
589 | */ | |
590 | 0 | public void setDataset(String value) |
591 | { | |
592 | 0 | this.dataset = value; |
593 | } | |
594 | ||
595 | /** | |
596 | * Gets the value of the created property. | |
597 | * | |
598 | * @return possible object is {@link XMLGregorianCalendar } | |
599 | * | |
600 | */ | |
601 | 0 | public XMLGregorianCalendar getCreated() |
602 | { | |
603 | 0 | return created; |
604 | } | |
605 | ||
606 | /** | |
607 | * Sets the value of the created property. | |
608 | * | |
609 | * @param value | |
610 | * allowed object is {@link XMLGregorianCalendar } | |
611 | * | |
612 | */ | |
613 | 0 | public void setCreated(XMLGregorianCalendar value) |
614 | { | |
615 | 0 | this.created = value; |
616 | } | |
617 | ||
618 | /** | |
619 | * Gets the value of the modified property. | |
620 | * | |
621 | * @return possible object is {@link XMLGregorianCalendar } | |
622 | * | |
623 | */ | |
624 | 0 | public XMLGregorianCalendar getModified() |
625 | { | |
626 | 0 | return modified; |
627 | } | |
628 | ||
629 | /** | |
630 | * Sets the value of the modified property. | |
631 | * | |
632 | * @param value | |
633 | * allowed object is {@link XMLGregorianCalendar } | |
634 | * | |
635 | */ | |
636 | 0 | public void setModified(XMLGregorianCalendar value) |
637 | { | |
638 | 0 | this.modified = value; |
639 | } | |
640 | ||
641 | /** | |
642 | * Gets the value of the version property. | |
643 | * | |
644 | */ | |
645 | 2 | public int getVersion() |
646 | { | |
647 | 2 | return version; |
648 | } | |
649 | ||
650 | /** | |
651 | * Sets the value of the version property. | |
652 | * | |
653 | */ | |
654 | 0 | public void setVersion(int value) |
655 | { | |
656 | 0 | this.version = value; |
657 | } | |
658 | ||
659 | } |