1. Project Clover database Fri Dec 6 2024 13:47:14 GMT
  2. Package jalview.ws.rest.params

File Tree.java

 

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Classes

Class
Line #
Actions
Tree 40 8 6
0.00%
 

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1    /*
2    * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3    * Copyright (C) $$Year-Rel$$ The Jalview Authors
4    *
5    * This file is part of Jalview.
6    *
7    * Jalview is free software: you can redistribute it and/or
8    * modify it under the terms of the GNU General Public License
9    * as published by the Free Software Foundation, either version 3
10    * of the License, or (at your option) any later version.
11    *
12    * Jalview is distributed in the hope that it will be useful, but
13    * WITHOUT ANY WARRANTY; without even the implied warranty
14    * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15    * PURPOSE. See the GNU General Public License for more details.
16    *
17    * You should have received a copy of the GNU General Public License
18    * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19    * The Jalview Authors are detailed in the 'AUTHORS' file.
20    */
21    package jalview.ws.rest.params;
22   
23    import jalview.util.MessageManager;
24    import jalview.ws.params.OptionI;
25    import jalview.ws.rest.InputType;
26    import jalview.ws.rest.RestJob;
27   
28    import java.io.UnsupportedEncodingException;
29    import java.util.ArrayList;
30    import java.util.List;
31   
32    import org.apache.http.entity.mime.content.ContentBody;
33   
34    /**
35    * format a tree for input to a rest service
36    *
37    * @author JimP
38    *
39    */
 
40    public class Tree extends InputType
41    {
 
42  0 toggle public Tree()
43    {
44  0 super(new Class[] { jalview.analysis.NJTree.class });
45    }
46   
47    // TODO specify modifiers for tree output format
 
48  0 toggle @Override
49    public ContentBody formatForInput(RestJob rj)
50    throws UnsupportedEncodingException
51    {
52    // TODO: implement tree inputType
53    /*
54    * rj.getTreeForInput(token); return new StringBody(new )
55    */
56  0 throw new Error(MessageManager
57    .getString("error.tree_inputtype_not_yet_implemented"));
58    // return null;
59    }
60   
 
61  0 toggle public String getURLtokenPrefix()
62    {
63  0 return "NEWICK";
64    }
65   
 
66  0 toggle @Override
67    public List<String> getURLEncodedParameter()
68    {
69  0 ArrayList<String> prms = new ArrayList<String>();
70  0 super.addBaseParams(prms);
71  0 return prms;
72    }
73   
 
74  0 toggle @Override
75    public boolean configureProperty(String tok, String val,
76    StringBuffer warnings)
77    {
78  0 return true;
79    }
80   
 
81  0 toggle @Override
82    public List<OptionI> getOptions()
83    {
84  0 return getBaseOptions();
85    }
86   
87    }