Class |
Line # |
Actions |
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RfamFull | 29 | 7 | 7 |
1 | /* | |
2 | * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) | |
3 | * Copyright (C) $$Year-Rel$$ The Jalview Authors | |
4 | * | |
5 | * This file is part of Jalview. | |
6 | * | |
7 | * Jalview is free software: you can redistribute it and/or | |
8 | * modify it under the terms of the GNU General Public License | |
9 | * as published by the Free Software Foundation, either version 3 | |
10 | * of the License, or (at your option) any later version. | |
11 | * | |
12 | * Jalview is distributed in the hope that it will be useful, but | |
13 | * WITHOUT ANY WARRANTY; without even the implied warranty | |
14 | * of MERCHANTABILITY or FITNESS FOR A PARTICULAR | |
15 | * PURPOSE. See the GNU General Public License for more details. | |
16 | * | |
17 | * You should have received a copy of the GNU General Public License | |
18 | * along with Jalview. If not, see <http://www.gnu.org/licenses/>. | |
19 | * The Jalview Authors are detailed in the 'AUTHORS' file. | |
20 | */ | |
21 | package jalview.ws.dbsources; | |
22 | ||
23 | /** | |
24 | * Flyweight class specifying retrieval of Full family alignments from RFAM | |
25 | * | |
26 | * @author Lauren Michelle Lui | |
27 | * | |
28 | */ | |
29 | public class RfamFull extends Rfam | |
30 | { | |
31 | 2 | public RfamFull() |
32 | { | |
33 | 2 | super(); |
34 | } | |
35 | ||
36 | 2 | @Override |
37 | public String getURLSuffix() | |
38 | { | |
39 | 2 | return "/alignment/full" + GZIPPED; |
40 | } | |
41 | ||
42 | /* | |
43 | * (non-Javadoc) | |
44 | * | |
45 | * @see jalview.ws.seqfetcher.DbSourceProxy#getDbName() | |
46 | */ | |
47 | 0 | @Override |
48 | public String getDbName() | |
49 | { | |
50 | 0 | return "RFAM (Full)"; |
51 | } | |
52 | ||
53 | 0 | @Override |
54 | public String getDbSource() | |
55 | { | |
56 | 0 | return getDbName(); // so we have unique DbSource string. |
57 | } | |
58 | ||
59 | 0 | @Override |
60 | public String getTestQuery() | |
61 | { | |
62 | // Can be retrieved from http://rfam.janelia.org/cgi-bin/getdesc?acc=RF00014 | |
63 | // or | |
64 | // http://rfam.sanger.ac.uk/family/alignment/download/format?alnType=full&nseLabels=0&format=stockholm&acc=RF00014 | |
65 | 0 | return "RF00014"; |
66 | } | |
67 | ||
68 | 0 | @Override |
69 | public String getDbVersion() | |
70 | { | |
71 | 0 | return null; |
72 | } | |
73 | ||
74 | 0 | @Override |
75 | public int getTier() | |
76 | { | |
77 | 0 | return 0; |
78 | } | |
79 | } |