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ShiftListTest | 34 | 11 | 2 |
1 | /* | |
2 | * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) | |
3 | * Copyright (C) $$Year-Rel$$ The Jalview Authors | |
4 | * | |
5 | * This file is part of Jalview. | |
6 | * | |
7 | * Jalview is free software: you can redistribute it and/or | |
8 | * modify it under the terms of the GNU General Public License | |
9 | * as published by the Free Software Foundation, either version 3 | |
10 | * of the License, or (at your option) any later version. | |
11 | * | |
12 | * Jalview is distributed in the hope that it will be useful, but | |
13 | * WITHOUT ANY WARRANTY; without even the implied warranty | |
14 | * of MERCHANTABILITY or FITNESS FOR A PARTICULAR | |
15 | * PURPOSE. See the GNU General Public License for more details. | |
16 | * | |
17 | * You should have received a copy of the GNU General Public License | |
18 | * along with Jalview. If not, see <http://www.gnu.org/licenses/>. | |
19 | * The Jalview Authors are detailed in the 'AUTHORS' file. | |
20 | */ | |
21 | package jalview.util; | |
22 | ||
23 | import static org.testng.AssertJUnit.assertEquals; | |
24 | import static org.testng.AssertJUnit.assertNull; | |
25 | ||
26 | import jalview.gui.JvOptionPane; | |
27 | ||
28 | import java.util.Arrays; | |
29 | import java.util.List; | |
30 | ||
31 | import org.testng.annotations.BeforeClass; | |
32 | import org.testng.annotations.Test; | |
33 | ||
34 | public class ShiftListTest | |
35 | { | |
36 | ||
37 | 1 | @BeforeClass(alwaysRun = true) |
38 | public void setUpJvOptionPane() | |
39 | { | |
40 | 1 | JvOptionPane.setInteractiveMode(false); |
41 | 1 | JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION); |
42 | } | |
43 | ||
44 | 1 | @Test(groups = { "Functional" }) |
45 | public void testParseMap() | |
46 | { | |
47 | 1 | assertNull(ShiftList.parseMap(null)); |
48 | 1 | assertNull(ShiftList.parseMap(new int[] {})); |
49 | ||
50 | /* | |
51 | * Gap map showing residues in aligned positions 2,3,6,8,9,10,12 | |
52 | */ | |
53 | 1 | int[] gm = new int[] { 2, 3, 6, 8, 9, 10, 12 }; |
54 | 1 | List<int[]> shifts = ShiftList.parseMap(gm).getShifts(); |
55 | 1 | assertEquals(4, shifts.size()); |
56 | ||
57 | // TODO are these results (which pass) correct?? | |
58 | 1 | assertEquals("[0, 2]", Arrays.toString(shifts.get(0))); |
59 | 1 | assertEquals("[4, 2]", Arrays.toString(shifts.get(1))); |
60 | 1 | assertEquals("[7, 1]", Arrays.toString(shifts.get(2))); |
61 | 1 | assertEquals("[11, 1]", Arrays.toString(shifts.get(3))); |
62 | } | |
63 | } |