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AtomSpecModelTest | 31 | 28 | 1 |
1 | /* | |
2 | * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) | |
3 | * Copyright (C) $$Year-Rel$$ The Jalview Authors | |
4 | * | |
5 | * This file is part of Jalview. | |
6 | * | |
7 | * Jalview is free software: you can redistribute it and/or | |
8 | * modify it under the terms of the GNU General Public License | |
9 | * as published by the Free Software Foundation, either version 3 | |
10 | * of the License, or (at your option) any later version. | |
11 | * | |
12 | * Jalview is distributed in the hope that it will be useful, but | |
13 | * WITHOUT ANY WARRANTY; without even the implied warranty | |
14 | * of MERCHANTABILITY or FITNESS FOR A PARTICULAR | |
15 | * PURPOSE. See the GNU General Public License for more details. | |
16 | * | |
17 | * You should have received a copy of the GNU General Public License | |
18 | * along with Jalview. If not, see <http://www.gnu.org/licenses/>. | |
19 | * The Jalview Authors are detailed in the 'AUTHORS' file. | |
20 | */ | |
21 | package jalview.structure; | |
22 | ||
23 | import static org.testng.Assert.assertEquals; | |
24 | import static org.testng.Assert.assertFalse; | |
25 | import static org.testng.Assert.assertTrue; | |
26 | ||
27 | import java.util.List; | |
28 | ||
29 | import org.testng.annotations.Test; | |
30 | ||
31 | public class AtomSpecModelTest | |
32 | { | |
33 | 1 | @Test(groups = "Functional") |
34 | public void testGetRanges() | |
35 | { | |
36 | 1 | AtomSpecModel model = new AtomSpecModel(); |
37 | 1 | assertFalse(model.getModels().iterator().hasNext()); |
38 | 1 | List<int[]> ranges = model.getRanges("1", "A"); |
39 | 1 | assertTrue(ranges.isEmpty()); |
40 | ||
41 | 1 | model.addRange("1", 12, 14, "A"); |
42 | 1 | assertTrue(model.getRanges("1", "B").isEmpty()); |
43 | 1 | assertTrue(model.getRanges("2", "A").isEmpty()); |
44 | 1 | ranges = model.getRanges("1", "A"); |
45 | 1 | assertEquals(ranges.size(), 1); |
46 | 1 | int[] range = ranges.get(0); |
47 | 1 | assertEquals(range[0], 12); |
48 | 1 | assertEquals(range[1], 14); |
49 | ||
50 | /* | |
51 | * add some ranges; they should be coalesced and | |
52 | * ordered when retrieved | |
53 | */ | |
54 | 1 | model.addRange("1", 25, 25, "A"); |
55 | 1 | model.addRange("1", 20, 24, "A"); |
56 | 1 | model.addRange("1", 6, 8, "A"); |
57 | 1 | model.addRange("1", 13, 18, "A"); |
58 | 1 | model.addRange("1", 5, 6, "A"); |
59 | 1 | ranges = model.getRanges("1", "A"); |
60 | 1 | assertEquals(ranges.size(), 3); |
61 | 1 | range = ranges.get(0); |
62 | 1 | assertEquals(range[0], 5); |
63 | 1 | assertEquals(range[1], 8); |
64 | 1 | range = ranges.get(1); |
65 | 1 | assertEquals(range[0], 12); |
66 | 1 | assertEquals(range[1], 18); |
67 | 1 | range = ranges.get(2); |
68 | 1 | assertEquals(range[0], 20); |
69 | 1 | assertEquals(range[1], 25); |
70 | } | |
71 | } |