Class |
Line # |
Actions |
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RNAInteractionColourScheme | 29 | 9 | 7 |
1 | /* | |
2 | * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) | |
3 | * Copyright (C) $$Year-Rel$$ The Jalview Authors | |
4 | * | |
5 | * This file is part of Jalview. | |
6 | * | |
7 | * Jalview is free software: you can redistribute it and/or | |
8 | * modify it under the terms of the GNU General Public License | |
9 | * as published by the Free Software Foundation, either version 3 | |
10 | * of the License, or (at your option) any later version. | |
11 | * | |
12 | * Jalview is distributed in the hope that it will be useful, but | |
13 | * WITHOUT ANY WARRANTY; without even the implied warranty | |
14 | * of MERCHANTABILITY or FITNESS FOR A PARTICULAR | |
15 | * PURPOSE. See the GNU General Public License for more details. | |
16 | * | |
17 | * You should have received a copy of the GNU General Public License | |
18 | * along with Jalview. If not, see <http://www.gnu.org/licenses/>. | |
19 | * The Jalview Authors are detailed in the 'AUTHORS' file. | |
20 | */ | |
21 | package jalview.schemes; | |
22 | ||
23 | import jalview.api.AlignViewportI; | |
24 | import jalview.datamodel.AnnotatedCollectionI; | |
25 | import jalview.datamodel.SequenceI; | |
26 | ||
27 | import java.awt.Color; | |
28 | ||
29 | public class RNAInteractionColourScheme extends ResidueColourScheme | |
30 | { | |
31 | 8 | public RNAInteractionColourScheme() |
32 | { | |
33 | 8 | super(); |
34 | } | |
35 | ||
36 | 0 | @Override |
37 | public Color findColour(char c) | |
38 | { | |
39 | // FIXME this is just a copy of NucleotideColourScheme | |
40 | 0 | return colors[ResidueProperties.nucleotideIndex[c]]; |
41 | } | |
42 | ||
43 | 0 | @Override |
44 | public Color findColour(char c, int j, SequenceI seq) | |
45 | { | |
46 | // FIXME this is just a copy of NucleotideColourScheme | |
47 | 0 | Color currentColour = Color.white; |
48 | 0 | try |
49 | { | |
50 | 0 | currentColour = colors[ResidueProperties.nucleotideIndex[c]]; |
51 | } catch (Exception ex) | |
52 | { | |
53 | } | |
54 | ||
55 | 0 | return currentColour; |
56 | } | |
57 | ||
58 | 3 | @Override |
59 | public boolean isNucleotideSpecific() | |
60 | { | |
61 | 3 | return true; |
62 | } | |
63 | ||
64 | 2 | @Override |
65 | public String getSchemeName() | |
66 | { | |
67 | 2 | return "RNA Interaction type"; |
68 | } | |
69 | ||
70 | /** | |
71 | * Returns a new instance of this colour scheme with which the given data may | |
72 | * be coloured | |
73 | */ | |
74 | 0 | @Override |
75 | public ColourSchemeI getInstance(AlignViewportI view, | |
76 | AnnotatedCollectionI coll) | |
77 | { | |
78 | 0 | return new RNAInteractionColourScheme(); |
79 | } | |
80 | } |