Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
OverviewRendererTest	43	22	1	0.00%	Show methods

Class OverviewRendererTest

Class OverviewRendererTest	Line # 43	Total Statements 22	Complexity 1	TOTAL Coverage 0.00%
testGetColumnColourFromSequence() : void   testGetColumnColourFromSequence() : void	4646	22.022	1.01	0.0 0.00%

 

Contributing tests

Source view

1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.renderer;
22
23		import static org.testng.Assert.assertEquals;
24
25		import jalview.datamodel.Alignment;
26		import jalview.datamodel.AlignmentI;
27		import jalview.datamodel.Sequence;
28		import jalview.datamodel.SequenceFeature;
29		import jalview.datamodel.SequenceI;
30		import jalview.gui.AlignViewport;
31		import jalview.renderer.seqfeatures.FeatureRenderer;
32		import jalview.schemes.FeatureColour;
33		import jalview.schemes.ZappoColourScheme;
34		import jalview.viewmodel.AlignmentViewport;
35		import jalview.viewmodel.OverviewDimensions;
36		import jalview.viewmodel.OverviewDimensionsShowHidden;
37		import jalview.viewmodel.ViewportRanges;
38
39		import java.awt.Color;
40
41		import org.testng.annotations.Test;
42
		0% Uncovered Elements: 23 (23) Complexity: 1 Complexity Density: 0.05
43		public class OverviewRendererTest
44		{
45
		0% Uncovered Elements: 22 (22) Complexity: 1 Complexity Density: 0.05 4-
46	0	@Test...
47		public void testGetColumnColourFromSequence()
48		{
49		// gapColour, residueColour, hiddenColour
50	0	OverviewResColourFinder cf = new OverviewResColourFinder(Color.PINK,
51		Color.white, Color.green);
52	0	Sequence seq1 = new Sequence("seq1", "PQ-RL-");
53	0	Sequence seq2 = new Sequence("seq2", "FVE");
54	0	AlignmentI al = new Alignment(new SequenceI[] { seq1, seq2 });
55	0	AlignmentViewport av = new AlignViewport(al);
56	0	OverviewDimensions od = new OverviewDimensionsShowHidden(
57		new ViewportRanges(al), false);
58	0	ResidueShaderI rs = new ResidueShader(new ZappoColourScheme());
59	0	FeatureRenderer fr = new FeatureRenderer(av);
60	0	OverviewRenderer or = new OverviewRenderer(fr, od, al, rs, cf);
61
62		// P is magenta (see ResidueProperties.zappo)
63	0	assertEquals(or.getColumnColourFromSequence(null, seq1, 0),
64		Color.magenta.getRGB());
65		// Q is green
66	0	assertEquals(or.getColumnColourFromSequence(null, seq1, 1),
67		Color.green.getRGB());
68		// gap is pink (specified in OverviewResColourFinder constructor above)
69	0	assertEquals(or.getColumnColourFromSequence(null, seq1, 2),
70		Color.pink.getRGB());
71		// F is orange
72	0	assertEquals(or.getColumnColourFromSequence(null, seq2, 0),
73		Color.orange.getRGB());
74		// E is red
75	0	assertEquals(or.getColumnColourFromSequence(null, seq2, 2),
76		Color.red.getRGB());
77		// past end of sequence colour as gap (JAL-2929)
78	0	assertEquals(or.getColumnColourFromSequence(null, seq2, 3),
79		Color.pink.getRGB());
80
81		/*
82		* now add a feature on seq1
83		*/
84	0	seq1.addSequenceFeature(
85		new SequenceFeature("Pfam", "desc", 1, 4, null));
86	0	fr.findAllFeatures(true);
87	0	av.setShowSequenceFeatures(true);
88	0	fr.setColour("Pfam", new FeatureColour(Color.yellow));
89	0	assertEquals(or.getColumnColourFromSequence(null, seq1, 0),
90		Color.yellow.getRGB());
91
92		// don't show sequence features
93	0	av.setShowSequenceFeatures(false);
94	0	assertEquals(or.getColumnColourFromSequence(null, seq1, 0),
95		Color.magenta.getRGB());
96		}
97		}