Class |
Line # |
Actions |
|||
---|---|---|---|---|---|
AlignmentAnnotationPojo | 28 | 16 | 16 |
1 | /* | |
2 | * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) | |
3 | * Copyright (C) $$Year-Rel$$ The Jalview Authors | |
4 | * | |
5 | * This file is part of Jalview. | |
6 | * | |
7 | * Jalview is free software: you can redistribute it and/or | |
8 | * modify it under the terms of the GNU General Public License | |
9 | * as published by the Free Software Foundation, either version 3 | |
10 | * of the License, or (at your option) any later version. | |
11 | * | |
12 | * Jalview is distributed in the hope that it will be useful, but | |
13 | * WITHOUT ANY WARRANTY; without even the implied warranty | |
14 | * of MERCHANTABILITY or FITNESS FOR A PARTICULAR | |
15 | * PURPOSE. See the GNU General Public License for more details. | |
16 | * | |
17 | * You should have received a copy of the GNU General Public License | |
18 | * along with Jalview. If not, see <http://www.gnu.org/licenses/>. | |
19 | * The Jalview Authors are detailed in the 'AUTHORS' file. | |
20 | */ | |
21 | package jalview.json.binding.biojson.v1; | |
22 | ||
23 | import java.util.ArrayList; | |
24 | import java.util.List; | |
25 | ||
26 | import com.github.reinert.jjschema.Attributes; | |
27 | ||
28 | public class AlignmentAnnotationPojo | |
29 | { | |
30 | ||
31 | @Attributes( | |
32 | required = false, | |
33 | description = "Label for the alignment annotation") | |
34 | private String label; | |
35 | ||
36 | @Attributes( | |
37 | required = false, | |
38 | description = "Description for the alignment annotation") | |
39 | private String description; | |
40 | ||
41 | @Attributes(required = false) | |
42 | private List<AnnotationPojo> annotations = new ArrayList<AnnotationPojo>(); | |
43 | ||
44 | @Attributes( | |
45 | required = false, | |
46 | enums = | |
47 | { "0", "1", "2" }, | |
48 | description = "Determines the rendering for the annotation<br><ul><li>0 - No graph</li><li>1 - Bar Graph</li><li>2 - Line graph</li></ul>") | |
49 | private int graphType; | |
50 | ||
51 | @Attributes( | |
52 | required = false, | |
53 | description = "Reference to the sequence in the alignment<br> if per-sequence annotation") | |
54 | private String sequenceRef; | |
55 | ||
56 | @Attributes( | |
57 | required = false, | |
58 | description = "Stores display settings for an annotation") | |
59 | private AnnotationDisplaySettingPojo annotationSettings; | |
60 | ||
61 | @Attributes(required = false, description = "Score of the annotation") | |
62 | private double score; | |
63 | ||
64 | @Attributes( | |
65 | required = false, | |
66 | description = "The annotation generation source") | |
67 | private String calcId; | |
68 | ||
69 | 5 | public String getLabel() |
70 | { | |
71 | 5 | return label; |
72 | } | |
73 | ||
74 | 5 | public void setLabel(String label) |
75 | { | |
76 | 5 | this.label = label; |
77 | } | |
78 | ||
79 | 5 | public String getDescription() |
80 | { | |
81 | 5 | return description; |
82 | } | |
83 | ||
84 | 5 | public void setDescription(String annotationId) |
85 | { | |
86 | 5 | this.description = annotationId; |
87 | } | |
88 | ||
89 | 180 | public List<AnnotationPojo> getAnnotations() |
90 | { | |
91 | 180 | return annotations; |
92 | } | |
93 | ||
94 | 0 | public void setAnnotations(List<AnnotationPojo> annotations) |
95 | { | |
96 | 0 | this.annotations = annotations; |
97 | } | |
98 | ||
99 | 5 | public String getSequenceRef() |
100 | { | |
101 | 5 | return sequenceRef; |
102 | } | |
103 | ||
104 | 0 | public void setSequenceRef(String sequenceRef) |
105 | { | |
106 | 0 | this.sequenceRef = sequenceRef; |
107 | } | |
108 | ||
109 | 5 | public int getGraphType() |
110 | { | |
111 | 5 | return graphType; |
112 | } | |
113 | ||
114 | 5 | public void setGraphType(int graphType) |
115 | { | |
116 | 5 | this.graphType = graphType; |
117 | } | |
118 | ||
119 | 5 | public AnnotationDisplaySettingPojo getAnnotationSettings() |
120 | { | |
121 | 5 | return annotationSettings; |
122 | } | |
123 | ||
124 | 5 | public void setAnnotationSettings( |
125 | AnnotationDisplaySettingPojo annotationSettings) | |
126 | { | |
127 | 5 | this.annotationSettings = annotationSettings; |
128 | } | |
129 | ||
130 | 5 | public double getScore() |
131 | { | |
132 | 5 | return score; |
133 | } | |
134 | ||
135 | 0 | public void setScore(double score) |
136 | { | |
137 | 0 | this.score = score; |
138 | } | |
139 | ||
140 | 5 | public String getCalcId() |
141 | { | |
142 | 5 | return calcId; |
143 | } | |
144 | ||
145 | 5 | public void setCalcId(String calcId) |
146 | { | |
147 | 5 | this.calcId = calcId; |
148 | } | |
149 | ||
150 | } |