Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
AlignmentFileReaderI	29	0	0	-1.0 -	Show methods

Class AlignmentFileReaderI

Class AlignmentFileReaderI	Line # 29	Total Statements 0	Complexity 0	TOTAL Coverage -1.0 -

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.io;
22
23		import jalview.api.AlignExportSettingsI;
24		import jalview.api.AlignmentViewPanel;
25		import jalview.api.FeatureSettingsModelI;
26		import jalview.datamodel.AlignmentI;
27		import jalview.datamodel.SequenceI;
28
		- Uncovered Elements: 0 (0) Complexity: 0 Complexity Density: -
29		public interface AlignmentFileReaderI
30		{
31
32		SequenceI[] getSeqsAsArray();
33
34		void addAnnotations(AlignmentI al);
35
36		void addGroups(AlignmentI al);
37
38		void setSeqs(SequenceI[] sequencesArray);
39
40		boolean hasWarningMessage();
41
42		String getWarningMessage();
43
44		String getInFile();
45
46		DataSourceType getDataSourceType();
47
48		FeatureSettingsModelI getFeatureColourScheme();
49
50		}