Class |
Line # |
Actions |
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JalviewChimeraBindingModel | 34 | 7 | 4 |
1 | /* | |
2 | * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) | |
3 | * Copyright (C) $$Year-Rel$$ The Jalview Authors | |
4 | * | |
5 | * This file is part of Jalview. | |
6 | * | |
7 | * Jalview is free software: you can redistribute it and/or | |
8 | * modify it under the terms of the GNU General Public License | |
9 | * as published by the Free Software Foundation, either version 3 | |
10 | * of the License, or (at your option) any later version. | |
11 | * | |
12 | * Jalview is distributed in the hope that it will be useful, but | |
13 | * WITHOUT ANY WARRANTY; without even the implied warranty | |
14 | * of MERCHANTABILITY or FITNESS FOR A PARTICULAR | |
15 | * PURPOSE. See the GNU General Public License for more details. | |
16 | * | |
17 | * You should have received a copy of the GNU General Public License | |
18 | * along with Jalview. If not, see <http://www.gnu.org/licenses/>. | |
19 | * The Jalview Authors are detailed in the 'AUTHORS' file. | |
20 | */ | |
21 | package jalview.gui; | |
22 | ||
23 | import javax.swing.JComponent; | |
24 | import javax.swing.SwingUtilities; | |
25 | ||
26 | import jalview.api.AlignmentViewPanel; | |
27 | import jalview.api.structures.JalviewStructureDisplayI; | |
28 | import jalview.datamodel.PDBEntry; | |
29 | import jalview.datamodel.SequenceI; | |
30 | import jalview.ext.rbvi.chimera.JalviewChimeraBinding; | |
31 | import jalview.io.DataSourceType; | |
32 | import jalview.structure.StructureSelectionManager; | |
33 | ||
34 | public class JalviewChimeraBindingModel extends JalviewChimeraBinding | |
35 | { | |
36 | 0 | public JalviewChimeraBindingModel(ChimeraViewFrame chimeraViewFrame, |
37 | StructureSelectionManager ssm, PDBEntry[] pdbentry, | |
38 | SequenceI[][] sequenceIs, DataSourceType protocol) | |
39 | { | |
40 | 0 | super(ssm, pdbentry, sequenceIs, protocol); |
41 | 0 | setViewer(chimeraViewFrame); |
42 | } | |
43 | ||
44 | 0 | @Override |
45 | public jalview.api.SequenceRenderer getSequenceRenderer( | |
46 | AlignmentViewPanel alignment) | |
47 | { | |
48 | 0 | return new SequenceRenderer(((AlignmentPanel) alignment).av); |
49 | } | |
50 | ||
51 | 0 | @Override |
52 | public void refreshGUI() | |
53 | { | |
54 | 0 | SwingUtilities.invokeLater(new Runnable() |
55 | { | |
56 | 0 | @Override |
57 | public void run() | |
58 | { | |
59 | 0 | JalviewStructureDisplayI theViewer = getViewer(); |
60 | 0 | theViewer.updateTitleAndMenus(); |
61 | 0 | ((JComponent) theViewer).revalidate(); |
62 | } | |
63 | }); | |
64 | } | |
65 | } |