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AnnotationLabelsTest2 | 45 | 68 | 16 |
1 | /* | |
2 | * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) | |
3 | * Copyright (C) $$Year-Rel$$ The Jalview Authors | |
4 | * | |
5 | * This file is part of Jalview. | |
6 | * | |
7 | * Jalview is free software: you can redistribute it and/or | |
8 | * modify it under the terms of the GNU General Public License | |
9 | * as published by the Free Software Foundation, either version 3 | |
10 | * of the License, or (at your option) any later version. | |
11 | * | |
12 | * Jalview is distributed in the hope that it will be useful, but | |
13 | * WITHOUT ANY WARRANTY; without even the implied warranty | |
14 | * of MERCHANTABILITY or FITNESS FOR A PARTICULAR | |
15 | * PURPOSE. See the GNU General Public License for more details. | |
16 | * | |
17 | * You should have received a copy of the GNU General Public License | |
18 | * along with Jalview. If not, see <http://www.gnu.org/licenses/>. | |
19 | * The Jalview Authors are detailed in the 'AUTHORS' file. | |
20 | */ | |
21 | package jalview.gui; | |
22 | ||
23 | import static org.testng.Assert.assertEquals; | |
24 | import static org.testng.Assert.assertFalse; | |
25 | import static org.testng.Assert.assertTrue; | |
26 | ||
27 | import java.io.File; | |
28 | ||
29 | import org.testng.annotations.AfterMethod; | |
30 | import org.testng.annotations.BeforeClass; | |
31 | import org.testng.annotations.BeforeMethod; | |
32 | import org.testng.annotations.DataProvider; | |
33 | import org.testng.annotations.Test; | |
34 | ||
35 | import jalview.bin.Cache; | |
36 | import jalview.bin.Jalview; | |
37 | import jalview.datamodel.AlignmentI; | |
38 | import jalview.datamodel.SequenceI; | |
39 | import jalview.gui.StructureViewer.ViewerType; | |
40 | import jalview.io.DataSourceType; | |
41 | import jalview.io.FileLoader; | |
42 | import jalview.structure.StructureImportSettings.TFType; | |
43 | import jalview.util.Platform; | |
44 | ||
45 | public class AnnotationLabelsTest2 | |
46 | { | |
47 | private static double scaling; | |
48 | ||
49 | 1 | @BeforeClass(alwaysRun = true) |
50 | public static void setUpBeforeClass() throws Exception | |
51 | { | |
52 | 1 | if (Desktop.instance != null) |
53 | 0 | Desktop.instance.closeAll_actionPerformed(null); |
54 | ||
55 | 1 | setUpJvOptionPane(); |
56 | /* | |
57 | * use read-only test properties file | |
58 | */ | |
59 | 1 | Cache.loadProperties("test/jalview/io/testProps.jvprops"); |
60 | 1 | Jalview.main(new String[] { "--nonews", "--nosplash", }); |
61 | ||
62 | 1 | scaling = JvSwingUtilsTest.getScaling(Desktop.instance); |
63 | } | |
64 | ||
65 | 4 | @AfterMethod(alwaysRun = true) |
66 | public void tearDown() | |
67 | { | |
68 | 4 | if (Desktop.instance != null) |
69 | 4 | Desktop.instance.closeAll_actionPerformed(null); |
70 | } | |
71 | ||
72 | /** | |
73 | * configure (read-only) properties for test to ensure Consensus is computed | |
74 | * for colour Above PID testing | |
75 | */ | |
76 | 4 | @BeforeMethod(alwaysRun = true) |
77 | public void setUp() | |
78 | { | |
79 | 4 | Cache.loadProperties("test/jalview/io/testProps.jvprops"); |
80 | 4 | Cache.applicationProperties.setProperty("SHOW_IDENTITY", |
81 | Boolean.TRUE.toString()); | |
82 | ||
83 | } | |
84 | ||
85 | 1 | public static void setUpJvOptionPane() |
86 | { | |
87 | 1 | JvOptionPane.setInteractiveMode(false); |
88 | 1 | JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION); |
89 | } | |
90 | ||
91 | 2 | @Test( |
92 | groups = | |
93 | { "Functional", "testTask1" }, | |
94 | dataProvider = "openFilesWithIdWidthChanges") | |
95 | public void testIdWidthChanges(String alignmentFilename, boolean wrap, | |
96 | int idWidth1min, int idWidth1max, int manualWidth, | |
97 | String structureFilename, String paeFilename, | |
98 | boolean secondaryStructureView, TFType temperatureFactorType, | |
99 | ViewerType viewerType, int idWidth2min, int idWidth2max) | |
100 | { | |
101 | 2 | AlignFrame af = new FileLoader() |
102 | .LoadFileWaitTillLoaded(alignmentFilename, DataSourceType.FILE); | |
103 | ||
104 | 2 | try |
105 | { | |
106 | 2 | Thread.sleep(200); // to allow alignment annotations to open |
107 | } catch (InterruptedException e) | |
108 | { | |
109 | // TODO Auto-generated catch block | |
110 | 0 | e.printStackTrace(); |
111 | } | |
112 | 2 | AlignViewport av = af.getCurrentView(); |
113 | ||
114 | 2 | int idWidth = 0; |
115 | ||
116 | 2 | idWidth = av.getIdWidth(); |
117 | 2 | assertTrue(idWidth > idWidth1min, |
118 | "idWidth (" + idWidth + ") is not greater than " + idWidth1min); | |
119 | 2 | assertTrue(idWidth < idWidth1max, "idWidth (" + idWidth |
120 | + ") is not narrower than " + idWidth1max); | |
121 | ||
122 | // set wrap | |
123 | 2 | if (wrap) |
124 | { | |
125 | 1 | af.setWrapFormat(true, false); |
126 | 1 | idWidth = av.getIdWidth(); |
127 | 1 | assertTrue(idWidth > idWidth1min, "After wrap idWidth (" + idWidth |
128 | + ") is not greater than " + idWidth1min); | |
129 | 1 | assertTrue(idWidth < idWidth1max, "After wrap idWidth (" + idWidth |
130 | + ") is not narrower than" + idWidth1max); | |
131 | } | |
132 | ||
133 | 2 | AlignmentI al = av.getAlignment(); |
134 | 2 | SequenceI s = al.getSequenceAt(0); |
135 | 2 | AlignmentPanel ap = af.alignPanel; |
136 | ||
137 | 2 | File structureFile = new File(structureFilename); |
138 | 2 | File paeFile = new File(paeFilename); |
139 | ||
140 | 2 | StructureViewer sv = StructureChooser.openStructureFileForSequence(null, |
141 | null, ap, s, false, structureFile.getAbsolutePath(), | |
142 | temperatureFactorType, paeFile.getAbsolutePath(), true, | |
143 | secondaryStructureView, false, viewerType); | |
144 | // give time for annotations to open | |
145 | 2 | try |
146 | { | |
147 | 2 | Thread.sleep(200); // to allow alignment annotations to open |
148 | } catch (InterruptedException e) | |
149 | { | |
150 | // TODO Auto-generated catch block | |
151 | 0 | e.printStackTrace(); |
152 | } | |
153 | ||
154 | // idWidth = ap.getIdPanel().getWidth(); | |
155 | 2 | idWidth = av.getIdWidth(); |
156 | 2 | assertTrue(idWidth >= idWidth2min, |
157 | "idWidth (" + idWidth + ") is not greater than " + idWidth2min); | |
158 | 2 | assertTrue(idWidth <= idWidth2max, "idWidth (" + idWidth |
159 | + ") is not narrower than " + idWidth2max); | |
160 | } | |
161 | ||
162 | 2 | @Test( |
163 | groups = | |
164 | { "Functional", "testTask1" }, | |
165 | dataProvider = "openFilesWithIdWidthChanges") | |
166 | public void testIdWidthNoChanges(String alignmentFilename, boolean wrap, | |
167 | int idWidth1min, int idWidth1max, int manualWidth, | |
168 | String structureFilename, String paeFilename, | |
169 | boolean secondaryStructureView, TFType temperatureFactorType, | |
170 | ViewerType viewerType, int idWidth2min, int idWidth2max) | |
171 | { | |
172 | 2 | AlignFrame af = new FileLoader() |
173 | .LoadFileWaitTillLoaded(alignmentFilename, DataSourceType.FILE); | |
174 | 2 | try |
175 | { | |
176 | 2 | Thread.sleep(200); // to allow alignment annotations to open |
177 | } catch (InterruptedException e) | |
178 | { | |
179 | // TODO Auto-generated catch block | |
180 | 0 | e.printStackTrace(); |
181 | } | |
182 | 2 | AlignViewport av = af.getCurrentView(); |
183 | ||
184 | 2 | int idWidth = 0; |
185 | 2 | idWidth = av.getIdWidth(); |
186 | 2 | assertTrue(idWidth > idWidth1min, |
187 | "idWidth (" + idWidth + ") is not greater than " + idWidth1min); | |
188 | 2 | assertTrue(idWidth < idWidth1max, |
189 | "idWidth (" + idWidth + ") is not narrower than" + idWidth1max); | |
190 | ||
191 | 2 | AlignmentI al = av.getAlignment(); |
192 | 2 | SequenceI s = al.getSequenceAt(0); |
193 | 2 | AlignmentPanel ap = af.alignPanel; |
194 | ||
195 | // set width manually | |
196 | 2 | av.setIdWidth(manualWidth); |
197 | 2 | ap.validateAnnotationDimensions(false); |
198 | 2 | ap.paintAlignment(true, false); |
199 | 2 | ap.getIdPanel().getIdCanvas().setManuallyAdjusted(true); |
200 | ||
201 | 2 | idWidth = av.getIdWidth(); |
202 | 2 | assertEquals(idWidth, manualWidth, |
203 | "idWidth is not set to the manually set width " + manualWidth); | |
204 | ||
205 | 2 | File structureFile = new File(structureFilename); |
206 | 2 | File paeFile = new File(paeFilename); |
207 | ||
208 | 2 | StructureViewer sv = StructureChooser.openStructureFileForSequence(null, |
209 | null, ap, s, false, structureFile.getAbsolutePath(), | |
210 | temperatureFactorType, paeFile.getAbsolutePath(), false, | |
211 | secondaryStructureView, false, viewerType); | |
212 | ||
213 | 2 | idWidth = ap.getIdPanel().getWidth();// av.getIdWidth(); |
214 | 2 | idWidth = av.getIdWidth(); |
215 | 2 | assertEquals(idWidth, manualWidth, |
216 | "idWidth is not set to the manually set width " + manualWidth | |
217 | + " after adding structure annotations"); | |
218 | 2 | assertFalse(idWidth > idWidth2min, |
219 | "idWidth (" + idWidth + ") is greater than " + idWidth2min); | |
220 | } | |
221 | ||
222 | 2 | @DataProvider(name = "openFilesWithIdWidthChanges") |
223 | public Object[][] openFilesWithIdWidthChanges() | |
224 | { | |
225 | /* | |
226 | String alignmentFilename, | |
227 | boolean wrap, | |
228 | int idWidth1min, | |
229 | int idWidth1max, | |
230 | int manualWidth, // ignored by testIdWidthChanges() | |
231 | String structureFilename, | |
232 | String paeFilename, | |
233 | boolean secondaryStructureView, | |
234 | TFType temperatureFactorType, | |
235 | ViewerType viewerType, | |
236 | int idWidth2min, | |
237 | int idWidth2max, | |
238 | */ | |
239 | 2 | int idWidth2min = scaling == 1.0 ? 114 : 108; |
240 | 2 | int idWidth2max = scaling == 1.0 ? 117 : 114; // was 130 |
241 | 2 | if (Platform.isMac()) |
242 | { | |
243 | 0 | idWidth2max = 122; |
244 | } | |
245 | ||
246 | 2 | return new Object[][] { |
247 | // | |
248 | /* | |
249 | */ | |
250 | { "./test/files/annotation_label_width/sample.a2m", false, 50, 70, | |
251 | 100, | |
252 | "./examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3.pdb", | |
253 | "./examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3_scores.json", | |
254 | true, TFType.PLDDT, null, idWidth2min, idWidth2max }, | |
255 | { "./test/files/annotation_label_width/sample.a2m", true, 50, 70, | |
256 | 100, | |
257 | "./examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3.pdb", | |
258 | "./examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3_scores.json", | |
259 | true, TFType.PLDDT, null, idWidth2min, idWidth2max }, | |
260 | /* | |
261 | */ | |
262 | }; | |
263 | } | |
264 | ||
265 | } |