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ChimeraXManager | 39 | 5 | 4 |
1 | /* | |
2 | * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) | |
3 | * Copyright (C) $$Year-Rel$$ The Jalview Authors | |
4 | * | |
5 | * This file is part of Jalview. | |
6 | * | |
7 | * Jalview is free software: you can redistribute it and/or | |
8 | * modify it under the terms of the GNU General Public License | |
9 | * as published by the Free Software Foundation, either version 3 | |
10 | * of the License, or (at your option) any later version. | |
11 | * | |
12 | * Jalview is distributed in the hope that it will be useful, but | |
13 | * WITHOUT ANY WARRANTY; without even the implied warranty | |
14 | * of MERCHANTABILITY or FITNESS FOR A PARTICULAR | |
15 | * PURPOSE. See the GNU General Public License for more details. | |
16 | * | |
17 | * You should have received a copy of the GNU General Public License | |
18 | * along with Jalview. If not, see <http://www.gnu.org/licenses/>. | |
19 | * The Jalview Authors are detailed in the 'AUTHORS' file. | |
20 | */ | |
21 | package jalview.ext.rbvi.chimera; | |
22 | ||
23 | import java.util.List; | |
24 | ||
25 | import ext.edu.ucsf.rbvi.strucviz2.ChimeraManager; | |
26 | import ext.edu.ucsf.rbvi.strucviz2.StructureManager; | |
27 | ||
28 | /** | |
29 | * A class to help Jalview start, stop and send commands to ChimeraX. | |
30 | * <p> | |
31 | * Much of the functionality is common with Chimera, so for convenience we | |
32 | * extend ChimeraManager, however note this class is <em>not</em> based on the | |
33 | * Cytoscape class at | |
34 | * {@code https://github.com/RBVI/structureVizX/blob/master/src/main/java/edu/ucsf/rbvi/structureVizX/internal/model/ChimeraManager.java}. | |
35 | * | |
36 | * @author gmcarstairs | |
37 | * | |
38 | */ | |
39 | public class ChimeraXManager extends ChimeraManager | |
40 | { | |
41 | ||
42 | 0 | public ChimeraXManager(StructureManager structureManager) |
43 | { | |
44 | 0 | super(structureManager); |
45 | } | |
46 | ||
47 | 0 | public boolean isChimeraX() |
48 | { | |
49 | 0 | return true; |
50 | } | |
51 | ||
52 | /** | |
53 | * Returns "POST" as the HTTP request method to use for REST service calls to | |
54 | * ChimeraX | |
55 | * | |
56 | * @return | |
57 | */ | |
58 | 0 | protected String getHttpRequestMethod() |
59 | { | |
60 | 0 | return "GET"; |
61 | } | |
62 | ||
63 | /** | |
64 | * Adds command-line arguments to start the REST server | |
65 | */ | |
66 | 0 | protected void addLaunchArguments(List<String> args) |
67 | { | |
68 | 0 | args.add("--cmd"); |
69 | 0 | args.add("remote rest start"); |
70 | } | |
71 | ||
72 | } |