1. Project Clover database Fri Dec 6 2024 13:47:14 GMT
  2. Package jalview.ext.rbvi.chimera

File ChimeraXManager.java

 

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Classes

Class
Line #
Actions
ChimeraXManager 39 5 4
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1    /*
2    * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3    * Copyright (C) $$Year-Rel$$ The Jalview Authors
4    *
5    * This file is part of Jalview.
6    *
7    * Jalview is free software: you can redistribute it and/or
8    * modify it under the terms of the GNU General Public License
9    * as published by the Free Software Foundation, either version 3
10    * of the License, or (at your option) any later version.
11    *
12    * Jalview is distributed in the hope that it will be useful, but
13    * WITHOUT ANY WARRANTY; without even the implied warranty
14    * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15    * PURPOSE. See the GNU General Public License for more details.
16    *
17    * You should have received a copy of the GNU General Public License
18    * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19    * The Jalview Authors are detailed in the 'AUTHORS' file.
20    */
21    package jalview.ext.rbvi.chimera;
22   
23    import java.util.List;
24   
25    import ext.edu.ucsf.rbvi.strucviz2.ChimeraManager;
26    import ext.edu.ucsf.rbvi.strucviz2.StructureManager;
27   
28    /**
29    * A class to help Jalview start, stop and send commands to ChimeraX.
30    * <p>
31    * Much of the functionality is common with Chimera, so for convenience we
32    * extend ChimeraManager, however note this class is <em>not</em> based on the
33    * Cytoscape class at
34    * {@code https://github.com/RBVI/structureVizX/blob/master/src/main/java/edu/ucsf/rbvi/structureVizX/internal/model/ChimeraManager.java}.
35    *
36    * @author gmcarstairs
37    *
38    */
 
39    public class ChimeraXManager extends ChimeraManager
40    {
41   
 
42  0 toggle public ChimeraXManager(StructureManager structureManager)
43    {
44  0 super(structureManager);
45    }
46   
 
47  0 toggle public boolean isChimeraX()
48    {
49  0 return true;
50    }
51   
52    /**
53    * Returns "POST" as the HTTP request method to use for REST service calls to
54    * ChimeraX
55    *
56    * @return
57    */
 
58  0 toggle protected String getHttpRequestMethod()
59    {
60  0 return "GET";
61    }
62   
63    /**
64    * Adds command-line arguments to start the REST server
65    */
 
66  0 toggle protected void addLaunchArguments(List<String> args)
67    {
68  0 args.add("--cmd");
69  0 args.add("remote rest start");
70    }
71   
72    }