Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
AllRowsCollection	27	8	5	0.8461538684.6%	Show methods

Class AllRowsCollection

Class AllRowsCollection	Line # 27	Total Statements 8	Complexity 5	TOTAL Coverage 0.8461538684.6%
AllRowsCollection(int,int,AlignmentI)   AllRowsCollection(int,int,AlignmentI)	3737	4.04	1.01	1.0 1.0100%
iterator() : Iterator<Integer>   iterator() : Iterator<Integer>	4545	1.01	1.01	1.0 1.0100%
isHidden(int) : boolean   isHidden(int) : boolean	5151	1.01	1.01	0.0 0.00%
getSequence(int) : SequenceI   getSequence(int) : SequenceI	5757	1.01	1.01	1.0 1.0100%
hasHidden() : boolean   hasHidden() : boolean	6363	1.01	1.01	1.0 1.0100%

 

Contributing tests

Contributing tests

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	Test contribution	Test	Result	Actions
	0.84615386	jalview.project.Jalview2xmlTests.testStoreAndRecoverOverviewjalview.project.Jalview2xmlTests.testStoreAndRecoverOverview	1PASS

 

Source view

1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.datamodel;
22
23		import jalview.api.AlignmentRowsCollectionI;
24
25		import java.util.Iterator;
26
		84.6% Uncovered Elements: 2 (13) Complexity: 5 Complexity Density: 0.62
27		public class AllRowsCollection implements AlignmentRowsCollectionI
28		{
29		int start;
30
31		int end;
32
33		AlignmentI alignment;
34
35		HiddenSequences hidden;
36
		100% Uncovered Elements: 0 (4) Complexity: 1 Complexity Density: 0.25
37	15	public AllRowsCollection(int s, int e, AlignmentI al)...
38		{
39	15	start = s;
40	15	end = e;
41	15	alignment = al;
42	15	hidden = al.getHiddenSequences();
43		}
44
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
45	15	@Override...
46		public Iterator<Integer> iterator()
47		{
48	15	return new AllRowsIterator(start, end, alignment);
49		}
50
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
51	0	@Override...
52		public boolean isHidden(int seq)
53		{
54	0	return hidden.isHidden(seq);
55		}
56
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
57	171	@Override...
58		public SequenceI getSequence(int seq)
59		{
60	171	return alignment.getSequenceAtAbsoluteIndex(seq);
61		}
62
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
63	15	@Override...
64		public boolean hasHidden()
65		{
66	15	return (hidden.getSize() > 0);
67		}
68		}