Class |
Line # |
Actions |
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AppletJmolBinding | 37 | 22 | 23 |
1 | /* | |
2 | * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) | |
3 | * Copyright (C) $$Year-Rel$$ The Jalview Authors | |
4 | * | |
5 | * This file is part of Jalview. | |
6 | * | |
7 | * Jalview is free software: you can redistribute it and/or | |
8 | * modify it under the terms of the GNU General Public License | |
9 | * as published by the Free Software Foundation, either version 3 | |
10 | * of the License, or (at your option) any later version. | |
11 | * | |
12 | * Jalview is distributed in the hope that it will be useful, but | |
13 | * WITHOUT ANY WARRANTY; without even the implied warranty | |
14 | * of MERCHANTABILITY or FITNESS FOR A PARTICULAR | |
15 | * PURPOSE. See the GNU General Public License for more details. | |
16 | * | |
17 | * You should have received a copy of the GNU General Public License | |
18 | * along with Jalview. If not, see <http://www.gnu.org/licenses/>. | |
19 | * The Jalview Authors are detailed in the 'AUTHORS' file. | |
20 | */ | |
21 | package jalview.appletgui; | |
22 | ||
23 | import jalview.api.AlignmentViewPanel; | |
24 | import jalview.datamodel.PDBEntry; | |
25 | import jalview.datamodel.SequenceI; | |
26 | import jalview.ext.jmol.JalviewJmolBinding; | |
27 | import jalview.io.DataSourceType; | |
28 | import jalview.structure.StructureSelectionManager; | |
29 | ||
30 | import java.awt.Container; | |
31 | import java.util.Map; | |
32 | ||
33 | import org.jmol.api.JmolAppConsoleInterface; | |
34 | import org.jmol.console.AppletConsole; | |
35 | import javajs.util.BS; | |
36 | ||
37 | class AppletJmolBinding extends JalviewJmolBinding | |
38 | { | |
39 | ||
40 | /** | |
41 | * Window that contains the bound Jmol instance | |
42 | */ | |
43 | private AppletJmol appletJmolBinding; | |
44 | ||
45 | 0 | public AppletJmolBinding(AppletJmol appletJmol, |
46 | StructureSelectionManager sSm, PDBEntry[] pdbentry, | |
47 | SequenceI[][] seq, DataSourceType protocol) | |
48 | { | |
49 | 0 | super(sSm, pdbentry, seq, protocol); |
50 | 0 | appletJmolBinding = appletJmol; |
51 | } | |
52 | ||
53 | 0 | @Override |
54 | public jalview.api.SequenceRenderer getSequenceRenderer( | |
55 | AlignmentViewPanel alignment) | |
56 | { | |
57 | 0 | return new SequenceRenderer(((AlignmentPanel) alignment).av); |
58 | } | |
59 | ||
60 | 0 | @Override |
61 | public void sendConsoleEcho(String strEcho) | |
62 | { | |
63 | 0 | if (appletJmolBinding.scriptWindow == null) |
64 | { | |
65 | 0 | appletJmolBinding.showConsole(true); |
66 | } | |
67 | ||
68 | 0 | appletJmolBinding.addToHistory(strEcho); |
69 | } | |
70 | ||
71 | 0 | @Override |
72 | public void sendConsoleMessage(String strStatus) | |
73 | { | |
74 | 0 | if (appletJmolBinding.history != null && strStatus != null |
75 | && !strStatus.equals("Script completed")) | |
76 | { | |
77 | 0 | appletJmolBinding.addToHistory(strStatus); |
78 | } | |
79 | } | |
80 | ||
81 | 0 | @Override |
82 | public void showUrl(String url, String target) | |
83 | { | |
84 | 0 | appletJmolBinding.ap.alignFrame.showURL(url, target); |
85 | ||
86 | } | |
87 | ||
88 | 0 | @Override |
89 | public void refreshGUI() | |
90 | { | |
91 | 0 | appletJmolBinding.updateTitleAndMenus(); |
92 | } | |
93 | ||
94 | 0 | @Override |
95 | public void updateColours(Object source) | |
96 | { | |
97 | 0 | AlignmentPanel ap = (AlignmentPanel) source; |
98 | 0 | colourBySequence(ap); |
99 | } | |
100 | ||
101 | 0 | @Override |
102 | public void showUrl(String url) | |
103 | { | |
104 | 0 | try |
105 | { | |
106 | 0 | appletJmolBinding.ap.av.applet.getAppletContext() |
107 | .showDocument(new java.net.URL(url), "jmol"); | |
108 | } catch (java.net.MalformedURLException ex) | |
109 | { | |
110 | } | |
111 | } | |
112 | ||
113 | 0 | public void newJmolPopup(boolean translateLocale, String menuName, |
114 | boolean asPopup) | |
115 | { | |
116 | // jmolpopup = new JmolAwtPopup(); // is this used? | |
117 | // jmolpopup.jpiInitialize((viewer), menuName); | |
118 | } | |
119 | ||
120 | 0 | @Override |
121 | public void notifyScriptTermination(String strStatus, int msWalltime) | |
122 | { | |
123 | // do nothing. | |
124 | } | |
125 | ||
126 | 0 | @Override |
127 | public void selectionChanged(BS arg0) | |
128 | { | |
129 | // TODO Auto-generated method stub | |
130 | ||
131 | } | |
132 | ||
133 | 0 | @Override |
134 | public void refreshPdbEntries() | |
135 | { | |
136 | // noop | |
137 | } | |
138 | ||
139 | 0 | @Override |
140 | public void showConsole(boolean show) | |
141 | { | |
142 | 0 | appletJmolBinding.showConsole(show); |
143 | } | |
144 | ||
145 | 0 | @Override |
146 | protected JmolAppConsoleInterface createJmolConsole( | |
147 | Container consolePanel, String buttonsToShow) | |
148 | { | |
149 | 0 | JmolAppConsoleInterface appc = new AppletConsole(); |
150 | 0 | appc.start(jmolViewer); |
151 | 0 | return appc; |
152 | } | |
153 | ||
154 | 0 | @Override |
155 | protected void releaseUIResources() | |
156 | { | |
157 | 0 | appletJmolBinding = null; |
158 | 0 | closeConsole(); |
159 | } | |
160 | ||
161 | 0 | @Override |
162 | public void releaseReferences(Object svl) | |
163 | { | |
164 | } | |
165 | ||
166 | 0 | @Override |
167 | public int[] resizeInnerPanel(String data) | |
168 | { | |
169 | 0 | return null; |
170 | } | |
171 | ||
172 | 0 | @Override |
173 | public Map<String, Object> getJSpecViewProperty(String arg0) | |
174 | { | |
175 | 0 | return null; |
176 | } | |
177 | } |