Class | Line # | Actions | |||
---|---|---|---|---|---|
AlignAnalysisUIText | 23 | 25 | 16 | 0.512195151.2% |
Class AlignAnalysisUIText |
Line # 23 |
25 |
16 |
0.512195151.2% |
---|---|---|---|---|
getServiceType() : String getServiceType() : String | 2828 | 1.01 | 1.01 | 0.0 0.00% |
getCalcId() : String getCalcId() : String | 3737 | 1.01 | 1.01 | 0.0 0.00% |
isNa() : boolean isNa() : boolean | 4747 | 1.01 | 1.01 | 0.0 0.00% |
isPr() : boolean isPr() : boolean | 5252 | 1.01 | 1.01 | 0.0 0.00% |
isAA() : boolean isAA() : boolean | 5757 | 1.01 | 1.01 | 0.0 0.00% |
AlignAnalysisUIText(String,Class<?>,String,boolean,boolean,boolean,String,String,String,String) AlignAnalysisUIText(String,Class<?>,String,boolean,boolean,boolean,String,String,String,String) | 6666 | 10.010 | 1.01 | 1.0 1.0100% |
getClient() : Class getClient() : Class | 8383 | 1.01 | 1.01 | 1.0 1.0100% |
setClient(Class) : void setClient(Class) : void | 8888 | 1.01 | 1.01 | 0.0 0.00% |
getAAconToggle() : String getAAconToggle() : String | 9393 | 1.01 | 1.01 | 1.0 1.0100% |
setAAconToggle(String) : void setAAconToggle(String) : void | 9898 | 1.01 | 1.01 | 0.0 0.00% |
getAAconToggleTooltip() : String getAAconToggleTooltip() : String | 103103 | 1.01 | 1.01 | 1.0 1.0100% |
setAAconToggleTooltip(String) : void setAAconToggleTooltip(String) : void | 108108 | 1.01 | 1.01 | 0.0 0.00% |
getAAeditSettings() : String getAAeditSettings() : String | 113113 | 1.01 | 1.01 | 1.0 1.0100% |
setAAeditSettings(String) : void setAAeditSettings(String) : void | 118118 | 1.01 | 1.01 | 0.0 0.00% |
getAAeditSettingsTooltip() : String getAAeditSettingsTooltip() : String | 123123 | 1.01 | 1.01 | 1.0 1.0100% |
setAAeditSettingsTooltip(String) : void setAAeditSettingsTooltip(String) : void | 128128 | 1.01 | 1.01 | 0.0 0.00% |
0.5121951
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
0.2682927
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
0.2682927
|
jalview.gui.AnnotationLabelsTest2.testIdWidthChangesjalview.gui.AnnotationLabelsTest2.testIdWidthChanges | 1PASS | ||
0.24390244
|
jalview.gui.PairwiseAlignmentPanelTest.testConstructor_noSelectionGroupjalview.gui.PairwiseAlignmentPanelTest.testConstructor_noSelectionGroup | 1PASS | ||
0.24390244
|
jalview.bin.CommandsTest2.structureOpeningArgsTestjalview.bin.CommandsTest2.structureOpeningArgsTest | 1PASS | ||
0.24390244
|
jalview.gui.QuitHandlerTest.testForceQuitjalview.gui.QuitHandlerTest.testForceQuit | 1PASS | ||
0.24390244
|
jalview.gui.AnnotationChooserTest.testDeselectType_showForSelectedjalview.gui.AnnotationChooserTest.testDeselectType_showForSelected | 1PASS | ||
0.24390244
|
jalview.gui.AlignFrameTest.testNewView_colourThresholdsjalview.gui.AlignFrameTest.testNewView_colourThresholds | 1PASS | ||
0.24390244
|
jalview.renderer.seqfeatures.FeatureRendererTest.testFilterFeaturesForDisplayjalview.renderer.seqfeatures.FeatureRendererTest.testFilterFeaturesForDisplay | 1PASS | ||
0.24390244
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFindDistancesjalview.analysis.scoremodels.FeatureDistanceModelTest.testFindDistances | 1PASS | ||
0.24390244
|
jalview.io.CrossRef2xmlTests.openCrossrefsForEnsemblTwicejalview.io.CrossRef2xmlTests.openCrossrefsForEnsemblTwice | 1PASS | ||
0.24390244
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverPDBEntryjalview.project.Jalview2xmlTests.testStoreAndRecoverPDBEntry | 1PASS | ||
0.24390244
|
jalview.util.ArrayUtilsTest.testReverseIntArrayjalview.util.ArrayUtilsTest.testReverseIntArray | 1PASS | ||
0.24390244
|
jalview.gui.AssociatePDBFileTest.testAssociatePDBFilejalview.gui.AssociatePDBFileTest.testAssociatePDBFile | 1PASS | ||
0.24390244
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
0.24390244
|
jalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistances_withSSUndefinedInBothSeqsjalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistances_withSSUndefinedInBothSeqs | 1PASS | ||
0.24390244
|
jalview.datamodel.AlignmentTest.testVerifyAlignmentDatasetRefsjalview.datamodel.AlignmentTest.testVerifyAlignmentDatasetRefs | 1PASS | ||
0.24390244
|
jalview.gui.AnnotationLabelsTest2.testIdWidthNoChangesjalview.gui.AnnotationLabelsTest2.testIdWidthNoChanges | 1PASS | ||
0.24390244
|
jalview.io.TCoffeeScoreFileTest.testGetAsArrayjalview.io.TCoffeeScoreFileTest.testGetAsArray | 1PASS | ||
0.24390244
|
jalview.schemes.ClustalxColourSchemeTest.testFindColour_ignoreGapsjalview.schemes.ClustalxColourSchemeTest.testFindColour_ignoreGaps | 1PASS | ||
0.24390244
|
jalview.datamodel.AlignmentTest.testDeleteSequenceBySeqjalview.datamodel.AlignmentTest.testDeleteSequenceBySeq | 1PASS | ||
0.24390244
|
jalview.gui.AnnotationChooserTest.testSelectType_showForAlljalview.gui.AnnotationChooserTest.testSelectType_showForAll | 1PASS | ||
0.24390244
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel_HiddenColumnsjalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel_HiddenColumns | 1PASS | ||
0.24390244
|
jalview.project.Jalview2xmlTests.testCopyViewSettingsjalview.project.Jalview2xmlTests.testCopyViewSettings | 1PASS | ||
0.24390244
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverNoOverviewjalview.project.Jalview2xmlTests.testStoreAndRecoverNoOverview | 1PASS | ||
0.24390244
|
jalview.datamodel.RangeElementsIteratorTest.testHasNextAndNextNoHiddenjalview.datamodel.RangeElementsIteratorTest.testHasNextAndNextNoHidden | 1PASS | ||
0.24390244
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverColourThresholdsjalview.project.Jalview2xmlTests.testStoreAndRecoverColourThresholds | 1PASS | ||
0.24390244
|
jalview.gui.StructureChooserTest.populateFilterComboBoxTestjalview.gui.StructureChooserTest.populateFilterComboBoxTest | 1PASS | ||
0.24390244
|
jalview.datamodel.AlignmentTest.testAlignAs_cdnaAsProtein_singleSequencejalview.datamodel.AlignmentTest.testAlignAs_cdnaAsProtein_singleSequence | 1PASS | ||
0.24390244
|
jalview.project.Jalview2xmlTests.testColourByAnnotScoresjalview.project.Jalview2xmlTests.testColourByAnnotScores | 1PASS | ||
0.24390244
|
jalview.gui.AnnotationLabelsTest2.testIdWidthChangesjalview.gui.AnnotationLabelsTest2.testIdWidthChanges | 1PASS | ||
0.24390244
|
jalview.schemes.ResidueColourSchemeTest.testIsApplicableTojalview.schemes.ResidueColourSchemeTest.testIsApplicableTo | 1PASS | ||
0.24390244
|
jalview.ext.jmol.JmolViewerTest.testSingleSeqViewJMoljalview.ext.jmol.JmolViewerTest.testSingleSeqViewJMol | 1PASS | ||
0.24390244
|
jalview.io.JSONFileTest.testGrpParsed_colourNonejalview.io.JSONFileTest.testGrpParsed_colourNone | 1PASS | ||
0.24390244
|
jalview.bin.CommandsTest.structureImageAnnotationsOutputTestjalview.bin.CommandsTest.structureImageAnnotationsOutputTest | 1PASS | ||
0.24390244
|
jalview.io.vcf.VCFLoaderTest.testDoLoad_reverseStrandjalview.io.vcf.VCFLoaderTest.testDoLoad_reverseStrand | 1PASS | ||
0.24390244
|
jalview.io.FeaturesFileTest.testPrintJalviewFormat_withFiltersjalview.io.FeaturesFileTest.testPrintJalviewFormat_withFilters | 1PASS | ||
0.24390244
|
jalview.gui.AnnotationChooserTest.testDeselectType_hideForAlljalview.gui.AnnotationChooserTest.testDeselectType_hideForAll | 1PASS | ||
0.24390244
|
jalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTestjalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTest | 1PASS | ||
0.24390244
|
jalview.datamodel.RangeElementsIteratorTest.testRemovejalview.datamodel.RangeElementsIteratorTest.testRemove | 1PASS | ||
0.24390244
|
jalview.gui.AnnotationChooserTest.testIsInActionScope_selectedScopejalview.gui.AnnotationChooserTest.testIsInActionScope_selectedScope | 1PASS | ||
0.24390244
|
jalview.io.TCoffeeScoreFileTest.testReadHeaderjalview.io.TCoffeeScoreFileTest.testReadHeader | 1PASS | ||
0.24390244
|
jalview.urls.UrlLinkDisplayTest.testGetSetValuejalview.urls.UrlLinkDisplayTest.testGetSetValue | 1PASS | ||
0.24390244
|
jalview.bin.CommandsTest2.structureOpeningArgsTestjalview.bin.CommandsTest2.structureOpeningArgsTest | 1PASS | ||
0.24390244
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverGeneLocusjalview.project.Jalview2xmlTests.testStoreAndRecoverGeneLocus | 1PASS | ||
0.24390244
|
jalview.bin.CommandsTest.structureImageAnnotationsOutputTestjalview.bin.CommandsTest.structureImageAnnotationsOutputTest | 1PASS | ||
0.24390244
|
jalview.schemes.ClustalxColourSchemeTest.testFindColourjalview.schemes.ClustalxColourSchemeTest.testFindColour | 1PASS | ||
0.24390244
|
jalview.gui.AnnotationColumnChooserTest.testResetjalview.gui.AnnotationColumnChooserTest.testReset | 1PASS | ||
0.24390244
|
jalview.workers.AlignCalcManagerTest.testRemoveWorkerForAnnotationjalview.workers.AlignCalcManagerTest.testRemoveWorkerForAnnotation | 1PASS | ||
0.24390244
|
jalview.analysis.GeneticCodesTest.testTranslateCanonicaljalview.analysis.GeneticCodesTest.testTranslateCanonical | 1PASS | ||
0.24390244
|
jalview.gui.QuitHandlerTest.testWaitForSaveQuitjalview.gui.QuitHandlerTest.testWaitForSaveQuit | 1PASS | ||
0.24390244
|
jalview.io.StockholmFileTest.pfamFileIOjalview.io.StockholmFileTest.pfamFileIO | 1PASS | ||
0.24390244
|
jalview.gui.AnnotationChooserTest.testSelectType_showForSelectedjalview.gui.AnnotationChooserTest.testSelectType_showForSelected | 1PASS | ||
0.24390244
|
jalview.project.Jalview2xmlTests.testMergeDatasetsforViewsjalview.project.Jalview2xmlTests.testMergeDatasetsforViews | 1PASS | ||
0.24390244
|
jalview.bin.CommandsTest2.structureOpeningArgsTestjalview.bin.CommandsTest2.structureOpeningArgsTest | 1PASS | ||
0.24390244
|
jalview.bin.CommandsTest.structureImageAnnotationsOutputTestjalview.bin.CommandsTest.structureImageAnnotationsOutputTest | 1PASS | ||
0.24390244
|
jalview.gui.AnnotationChooserTest.testBuildShowHideOptionsPaneljalview.gui.AnnotationChooserTest.testBuildShowHideOptionsPanel | 1PASS | ||
0.24390244
|
jalview.project.Jalview2xmlTests.testMergeDatasetsforManyViewsjalview.project.Jalview2xmlTests.testMergeDatasetsforManyViews | 1PASS | ||
0.24390244
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
0.24390244
|
jalview.project.Jalview2xmlTests.testStoreAndRestoreIDwidthAndAnnotationHeightjalview.project.Jalview2xmlTests.testStoreAndRestoreIDwidthAndAnnotationHeight | 1PASS | ||
0.24390244
|
jalview.io.AnnotatedPDBFileInputTest.testJalviewProjectRelocationAnnotationjalview.io.AnnotatedPDBFileInputTest.testJalviewProjectRelocationAnnotation | 1PASS | ||
0.24390244
|
jalview.gui.QuitHandlerTest.testSavedProjectChangesjalview.gui.QuitHandlerTest.testSavedProjectChanges | 1PASS | ||
0.24390244
|
jalview.analysis.DnaTest.testCompareCodonPosjalview.analysis.DnaTest.testCompareCodonPos | 1PASS | ||
0.24390244
|
jalview.io.gff.ExonerateHelperTest.testAddExonerateGffToAlignmentjalview.io.gff.ExonerateHelperTest.testAddExonerateGffToAlignment | 1PASS | ||
0.24390244
|
jalview.gui.AnnotationChooserTest.testBuildActionButtonsPaneljalview.gui.AnnotationChooserTest.testBuildActionButtonsPanel | 1PASS | ||
0.24390244
|
jalview.controller.AlignViewControllerTest.testSelectColumnsWithHighlightjalview.controller.AlignViewControllerTest.testSelectColumnsWithHighlight | 1PASS | ||
0.24390244
|
jalview.util.QuickSortTest.testSort_byStringValuesjalview.util.QuickSortTest.testSort_byStringValues | 1PASS | ||
0.24390244
|
jalview.schemes.FeatureColourTest.testGetDescriptionjalview.schemes.FeatureColourTest.testGetDescription | 1PASS | ||
0.24390244
|
jalview.io.BackupFilesTest.backupsEnabledNoRollMaxTestjalview.io.BackupFilesTest.backupsEnabledNoRollMaxTest | 1PASS | ||
0.24390244
|
jalview.gui.StructureChooserTest.sanitizeSeqNameTestjalview.gui.StructureChooserTest.sanitizeSeqNameTest | 1PASS | ||
0.24390244
|
jalview.project.Jalview2xmlTests.testTCoffeeScoresjalview.project.Jalview2xmlTests.testTCoffeeScores | 1PASS | ||
0.24390244
|
jalview.gui.AnnotationChooserTest.testSelectType_hideForSelectedjalview.gui.AnnotationChooserTest.testSelectType_hideForSelected | 1PASS | ||
0.24390244
|
jalview.renderer.seqfeatures.FeatureRendererTest.testFindAllFeaturesjalview.renderer.seqfeatures.FeatureRendererTest.testFindAllFeatures | 1PASS | ||
0.24390244
|
jalview.gui.SeqPanelTest.testFindMousePosition_wrapped_scales_longSequencejalview.gui.SeqPanelTest.testFindMousePosition_wrapped_scales_longSequence | 1PASS | ||
0.24390244
|
jalview.project.Jalview2xmlTests.viewRefPdbAnnotationjalview.project.Jalview2xmlTests.viewRefPdbAnnotation | 1PASS | ||
0.24390244
|
jalview.gui.AnnotationChooserTest.testIsInActionScope_unselectedScopejalview.gui.AnnotationChooserTest.testIsInActionScope_unselectedScope | 1PASS | ||
0.24390244
|
jalview.datamodel.AlignmentTest.testDeleteAllAnnotations_excludingAutocalculatedjalview.datamodel.AlignmentTest.testDeleteAllAnnotations_excludingAutocalculated | 1PASS | ||
0.24390244
|
jalview.gui.QuitHandlerTest.testUnsavedChangesjalview.gui.QuitHandlerTest.testUnsavedChanges | 1PASS | ||
0.24390244
|
jalview.ext.jmol.JmolViewerTest.testAddStrToSingleSeqViewJMoljalview.ext.jmol.JmolViewerTest.testAddStrToSingleSeqViewJMol | 1PASS | ||
0.24390244
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverGroupRepSeqsjalview.project.Jalview2xmlTests.testStoreAndRecoverGroupRepSeqs | 1PASS | ||
0.24390244
|
jalview.io.BackupFilesTest.backupsEnabledSingleFileBackupTestjalview.io.BackupFilesTest.backupsEnabledSingleFileBackupTest | 1PASS | ||
0.24390244
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
0.24390244
|
jalview.io.AnnotationFileIOTest.testAnnotateAlignmentViewjalview.io.AnnotationFileIOTest.testAnnotateAlignmentView | 1PASS | ||
0.24390244
|
jalview.project.Jalview2xmlTests.gatherViewsHerejalview.project.Jalview2xmlTests.gatherViewsHere | 1PASS | ||
0.24390244
|
jalview.gui.AnnotationLabelsTest2.testIdWidthNoChangesjalview.gui.AnnotationLabelsTest2.testIdWidthNoChanges | 1PASS | ||
0.24390244
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel_hiddenFirstColumnjalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel_hiddenFirstColumn | 1PASS | ||
0.24390244
|
jalview.schemes.FeatureColourTest.testGetColor_Graduatedjalview.schemes.FeatureColourTest.testGetColor_Graduated | 1PASS | ||
0.24390244
|
jalview.ext.pymol.PymolManagerTest.testGetPostRequestjalview.ext.pymol.PymolManagerTest.testGetPostRequest | 1PASS | ||
0.24390244
|
jalview.bin.CommandsTest.structureImageOutputTestjalview.bin.CommandsTest.structureImageOutputTest | 1PASS | ||
0.24390244
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
0.24390244
|
jalview.io.FeaturesFileTest.testPrintGffFormat_withFiltersjalview.io.FeaturesFileTest.testPrintGffFormat_withFilters | 1PASS | ||
0.24390244
|
jalview.analysis.DnaTest.testTranslateCdna_hiddenColumnsjalview.analysis.DnaTest.testTranslateCdna_hiddenColumns | 1PASS | ||
0.24390244
|
jalview.math.SparseMatrixTest.testConstructorjalview.math.SparseMatrixTest.testConstructor | 1PASS | ||
0.24390244
|
jalview.gui.SeqPanelTest.testSetStatusReturnsNearestResiduePositionjalview.gui.SeqPanelTest.testSetStatusReturnsNearestResiduePosition | 1PASS | ||
0.24390244
|
jalview.io.TCoffeeScoreFileTest.testWrongFilejalview.io.TCoffeeScoreFileTest.testWrongFile | 1PASS | ||
0.24390244
|
jalview.gui.QuitHandlerTest.testSavedAlignmentChangesjalview.gui.QuitHandlerTest.testSavedAlignmentChanges | 1PASS | ||
0.24390244
|
jalview.gui.AnnotationChooserTest.testResetOriginalStatejalview.gui.AnnotationChooserTest.testResetOriginalState | 1PASS | ||
0.24390244
|
jalview.bin.CommandsTest.structureImageAnnotationsOutputTestjalview.bin.CommandsTest.structureImageAnnotationsOutputTest | 1PASS | ||
0.24390244
|
jalview.io.FeaturesFileTest.testPrintGffFormatjalview.io.FeaturesFileTest.testPrintGffFormat | 1PASS | ||
0.24390244
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverReferenceSeqSettingsjalview.project.Jalview2xmlTests.testStoreAndRecoverReferenceSeqSettings | 1PASS | ||
0.24390244
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
0.24390244
|
jalview.ext.jmol.JmolParserTest.testAlignmentLoaderjalview.ext.jmol.JmolParserTest.testAlignmentLoader | 1PASS | ||
0.24390244
|
jalview.bin.CommandsTest2.structureOpeningArgsTestjalview.bin.CommandsTest2.structureOpeningArgsTest | 1PASS | ||
0.24390244
|
jalview.io.FeaturesFileTest.testParse_pureGff3jalview.io.FeaturesFileTest.testParse_pureGff3 | 1PASS | ||
0.24390244
|
jalview.project.Jalview2xmlTests.testAutoShowOverviewForLegacyProjectsjalview.project.Jalview2xmlTests.testAutoShowOverviewForLegacyProjects | 1PASS | ||
0.24390244
|
jalview.analysis.DnaTest.testTranslateCdna_withUntranslatableCodonsjalview.analysis.DnaTest.testTranslateCdna_withUntranslatableCodons | 1PASS | ||
0.24390244
|
jalview.schemes.PIDColourSchemeTest.testFindColour_ignoreGapsjalview.schemes.PIDColourSchemeTest.testFindColour_ignoreGaps | 1PASS | ||
0.24390244
|
jalview.gui.StructureChooserTest.fetchStructuresInfoMockedTestjalview.gui.StructureChooserTest.fetchStructuresInfoMockedTest | 1PASS | ||
0.24390244
|
jalview.analysis.DnaTest.testCompareCodonPos_isSymmetricjalview.analysis.DnaTest.testCompareCodonPos_isSymmetric | 1PASS | ||
0.24390244
|
jalview.project.Jalview2xmlTests.testSaveLoadFeatureColoursAndFiltersjalview.project.Jalview2xmlTests.testSaveLoadFeatureColoursAndFilters | 1PASS | ||
0.24390244
|
jalview.datamodel.AlignmentTest.testPropagateInsertionsOverlapjalview.datamodel.AlignmentTest.testPropagateInsertionsOverlap | 1PASS | ||
0.24390244
|
jalview.gui.AnnotationChooserTest.testDeselectType_showForAlljalview.gui.AnnotationChooserTest.testDeselectType_showForAll | 1PASS | ||
0.24390244
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFindDistances_withParamsjalview.analysis.scoremodels.FeatureDistanceModelTest.testFindDistances_withParams | 1PASS | ||
0.24390244
|
jalview.analysis.DnaTest.testTranslateCdna_withUntranslatableCodonsAndHiddenColumnsjalview.analysis.DnaTest.testTranslateCdna_withUntranslatableCodonsAndHiddenColumns | 1PASS | ||
0.24390244
|
jalview.bin.CommandsTest.structureImageAnnotationsOutputTestjalview.bin.CommandsTest.structureImageAnnotationsOutputTest | 1PASS | ||
0.24390244
|
jalview.gui.PopupMenuTest.testConfigureReferenceAnnotationsMenu_noReferenceAnnotationsjalview.gui.PopupMenuTest.testConfigureReferenceAnnotationsMenu_noReferenceAnnotations | 1PASS | ||
0.24390244
|
jalview.io.FeaturesFileTest.testPrintJalviewFormatjalview.io.FeaturesFileTest.testPrintJalviewFormat | 1PASS | ||
0.24390244
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
0.24390244
|
jalview.ext.jmol.JmolParserTest.testFileParserjalview.ext.jmol.JmolParserTest.testFileParser | 1PASS | ||
0.24390244
|
jalview.io.cache.JvCacheableInputBoxTest.updateCacheTestjalview.io.cache.JvCacheableInputBoxTest.updateCacheTest | 1PASS | ||
0.24390244
|
jalview.ext.jmol.JmolCommandsTest.testGetColourBySequenceCommands_hiddenColumnsjalview.ext.jmol.JmolCommandsTest.testGetColourBySequenceCommands_hiddenColumns | 1PASS | ||
0.24390244
|
jalview.project.Jalview2xmlTests.testPAEsaveRestorejalview.project.Jalview2xmlTests.testPAEsaveRestore | 1PASS | ||
0.24390244
|
jalview.bin.CommandsTest.structureImageAnnotationsOutputTestjalview.bin.CommandsTest.structureImageAnnotationsOutputTest | 1PASS | ||
0.24390244
|
jalview.gui.AlignViewportTest.testUpdateConservation_qualityOnlyjalview.gui.AlignViewportTest.testUpdateConservation_qualityOnly | 1PASS | ||
0.24390244
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverOverviewjalview.project.Jalview2xmlTests.testStoreAndRecoverOverview | 1PASS | ||
0.24390244
|
jalview.io.StockholmFileTest.pfamFileDataExtractionjalview.io.StockholmFileTest.pfamFileDataExtraction | 1PASS | ||
0.24390244
|
jalview.gui.AnnotationChooserTest.testSelectType_hideForAlljalview.gui.AnnotationChooserTest.testSelectType_hideForAll | 1PASS | ||
0.24390244
|
jalview.gui.AnnotationChooserTest.testGetAnnotationTypesjalview.gui.AnnotationChooserTest.testGetAnnotationTypes | 1PASS | ||
0.24390244
|
jalview.urls.DesktopUrlProviderFactoryTest.testCreateUrlProviderjalview.urls.DesktopUrlProviderFactoryTest.testCreateUrlProvider | 1PASS | ||
0.24390244
|
jalview.project.Jalview2xmlTests.testPcaViewAssociationjalview.project.Jalview2xmlTests.testPcaViewAssociation | 1PASS | ||
0.24390244
|
jalview.schemes.FeatureColourTest.testToJalviewFormatjalview.schemes.FeatureColourTest.testToJalviewFormat | 1PASS | ||
0.24390244
|
jalview.bin.CommandsTest.structureImageOutputTestjalview.bin.CommandsTest.structureImageOutputTest | 1PASS | ||
0.24390244
|
jalview.datamodel.AlignmentTest.testAlignAs_proteinAsCdnajalview.datamodel.AlignmentTest.testAlignAs_proteinAsCdna | 1PASS | ||
0.24390244
|
jalview.io.gff.GffTests.testResolveExonerateGffjalview.io.gff.GffTests.testResolveExonerateGff | 1PASS | ||
0.24390244
|
jalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTestjalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTest | 1PASS | ||
0.24390244
|
jalview.io.BackupFilesTest.backupsEnabledReverseRollMaxTestjalview.io.BackupFilesTest.backupsEnabledReverseRollMaxTest | 1PASS | ||
0.24390244
|
jalview.analysis.DnaTest.testTranslateCdna_sequenceOrderIndependentjalview.analysis.DnaTest.testTranslateCdna_sequenceOrderIndependent | 1PASS | ||
0.24390244
|
jalview.bin.CommandsTest.structureImageOutputTestjalview.bin.CommandsTest.structureImageOutputTest | 1PASS | ||
0.24390244
|
jalview.datamodel.AlignmentTest.testDeleteHiddenSequencejalview.datamodel.AlignmentTest.testDeleteHiddenSequence | 1PASS | ||
0.24390244
|
jalview.util.FormatTest.testForm_floatjalview.util.FormatTest.testForm_float | 1PASS | ||
0.24390244
|
jalview.datamodel.AlignmentTest.testFindAnnotations_bySeqLabelandorCalcIdjalview.datamodel.AlignmentTest.testFindAnnotations_bySeqLabelandorCalcId | 1PASS | ||
0.24390244
|
jalview.io.vcf.VCFLoaderTest.testDoLoad_vepCsqjalview.io.vcf.VCFLoaderTest.testDoLoad_vepCsq | 1PASS | ||
0.24390244
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
0.24390244
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFindFeatureAt_PointFeaturejalview.analysis.scoremodels.FeatureDistanceModelTest.testFindFeatureAt_PointFeature | 1PASS | ||
0.24390244
|
jalview.gui.JvSwingUtilsTest.testWrapTooltip_multilineShortTextjalview.gui.JvSwingUtilsTest.testWrapTooltip_multilineShortText | 1PASS | ||
0.24390244
|
jalview.urls.UrlProviderTest.testInitUrlProviderjalview.urls.UrlProviderTest.testInitUrlProvider | 1PASS | ||
0.24390244
|
jalview.datamodel.AlignmentTest.testPropagateInsertionsjalview.datamodel.AlignmentTest.testPropagateInsertions | 1PASS | ||
0.24390244
|
jalview.project.Jalview2xmlTests.noDuplicatePdbMappingsMadejalview.project.Jalview2xmlTests.noDuplicatePdbMappingsMade | 1PASS | ||
0.24390244
|
jalview.bin.CommandsTest.structureImageAnnotationsOutputTestjalview.bin.CommandsTest.structureImageAnnotationsOutputTest | 1PASS | ||
0.24390244
|
jalview.gui.PopupMenuTest.testConfigureReferenceAnnotationsMenujalview.gui.PopupMenuTest.testConfigureReferenceAnnotationsMenu | 1PASS | ||
0.24390244
|
jalview.io.BackupFilesTest.noBackupsEnabledTestjalview.io.BackupFilesTest.noBackupsEnabledTest | 1PASS | ||
0.24390244
|
jalview.bin.CommandsTest.structureImageOutputTestjalview.bin.CommandsTest.structureImageOutputTest | 1PASS | ||
0.24390244
|
jalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistances_withSSUndefinedInEitherOneSeqjalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistances_withSSUndefinedInEitherOneSeq | 1PASS | ||
0.24390244
|
jalview.analysis.AverageDistanceEngineTest.testUPGMAEnginejalview.analysis.AverageDistanceEngineTest.testUPGMAEngine | 1PASS | ||
0.24390244
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverAnnotationRowElementColoursjalview.project.Jalview2xmlTests.testStoreAndRecoverAnnotationRowElementColours | 1PASS | ||
0.24390244
|
jalview.gui.ColourMenuHelperTest.testAddMenuItems_nucleotidejalview.gui.ColourMenuHelperTest.testAddMenuItems_nucleotide | 1PASS | ||
0.24390244
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
0.24390244
|
jalview.io.FeaturesFileTest.testParsejalview.io.FeaturesFileTest.testParse | 1PASS | ||
0.24390244
|
jalview.analysis.GeneticCodesTest.testTranslate_standardTableAmbiguityCodesjalview.analysis.GeneticCodesTest.testTranslate_standardTableAmbiguityCodes | 1PASS | ||
0.24390244
|
jalview.datamodel.RangeElementsIteratorTest.testLastNextNoHiddenjalview.datamodel.RangeElementsIteratorTest.testLastNextNoHidden | 1PASS | ||
0.24390244
|
jalview.bin.CommandsTest2.structureOpeningArgsTestjalview.bin.CommandsTest2.structureOpeningArgsTest | 1PASS | ||
0.24390244
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverExpandedviewsjalview.project.Jalview2xmlTests.testStoreAndRecoverExpandedviews | 1PASS | ||
0.24390244
|
jalview.io.FeaturesFileTest.testParse_jalviewFeaturesOnlyjalview.io.FeaturesFileTest.testParse_jalviewFeaturesOnly | 1PASS | ||
0.24390244
|
jalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTestjalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTest | 1PASS | ||
0.24390244
|
jalview.gui.AnnotationChooserTest.testDeselectType_hideForSelectedjalview.gui.AnnotationChooserTest.testDeselectType_hideForSelected | 1PASS | ||
0.24390244
|
jalview.gui.ColourMenuHelperTest.testAddMenuItems_forAlignFramejalview.gui.ColourMenuHelperTest.testAddMenuItems_forAlignFrame | 1PASS | ||
0.24390244
|
jalview.io.BackupFilesTest.backupsEnabledRollMaxTestjalview.io.BackupFilesTest.backupsEnabledRollMaxTest | 1PASS | ||
0.24390244
|
jalview.bin.CommandsTest.structureImageAnnotationsOutputTestjalview.bin.CommandsTest.structureImageAnnotationsOutputTest | 1PASS | ||
0.24390244
|
jalview.gui.AnnotationChooserTest.testBuildApplyToOptionsPanel_withSelectionGroupjalview.gui.AnnotationChooserTest.testBuildApplyToOptionsPanel_withSelectionGroup | 1PASS | ||
0.24390244
|
jalview.bin.CommandsTest2.structureOpeningArgsTestjalview.bin.CommandsTest2.structureOpeningArgsTest | 1PASS | ||
0.24390244
|
jalview.project.Jalview2xmlTests.testRNAStructureRecoveryjalview.project.Jalview2xmlTests.testRNAStructureRecovery | 1PASS | ||
0.24390244
|
jalview.renderer.ScaleRendererTest.testCalculateMarksjalview.renderer.ScaleRendererTest.testCalculateMarks | 1PASS | ||
0.19512194
|
jalview.urls.UrlLinkDisplayTest.testUrljalview.urls.UrlLinkDisplayTest.testUrl | 1PASS | ||
0.19512194
|
jalview.renderer.ResidueShaderTest.testFindColour_gapColourjalview.renderer.ResidueShaderTest.testFindColour_gapColour | 1PASS | ||
0.09756097
|
jalview.datamodel.AlignmentTest.testGetWidthjalview.datamodel.AlignmentTest.testGetWidth | 1PASS | ||
0.09756097
|
jalview.datamodel.RangeElementsIteratorTest.testLastNextEndHiddenjalview.datamodel.RangeElementsIteratorTest.testLastNextEndHidden | 1PASS | ||
0.09756097
|
jalview.datamodel.AlignmentViewTest.testGetVisibleContigsjalview.datamodel.AlignmentViewTest.testGetVisibleContigs | 1PASS | ||
0.048780486
|
jalview.analysis.DnaTest.testReverseCdnajalview.analysis.DnaTest.testReverseCdna | 1PASS | ||
0.048780486
|
jalview.renderer.seqfeatures.FeatureRendererTest.testFindComplementFeaturesAtResiduejalview.renderer.seqfeatures.FeatureRendererTest.testFindComplementFeaturesAtResidue | 1PASS | ||
0.048780486
|
jalview.bin.CommandsTest2.structureOpeningArgsTestjalview.bin.CommandsTest2.structureOpeningArgsTest | 1PASS | ||
0.048780486
|
jalview.datamodel.RangeElementsIteratorTest.testHasNextAndNextEndHiddenjalview.datamodel.RangeElementsIteratorTest.testHasNextAndNextEndHidden | 1PASS | ||
0.048780486
|
jalview.schemes.AnnotationColourGradientTest.testFindColour_belowThresholdjalview.schemes.AnnotationColourGradientTest.testFindColour_belowThreshold | 1PASS | ||
0.048780486
|
jalview.schemes.Blosum62ColourSchemeTest.testFindColourjalview.schemes.Blosum62ColourSchemeTest.testFindColour | 1PASS |
1 | /* | ||||||
2 | * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) | ||||||
3 | * Copyright (C) $$Year-Rel$$ The Jalview Authors | ||||||
4 | * | ||||||
5 | * This file is part of Jalview. | ||||||
6 | * | ||||||
7 | * Jalview is free software: you can redistribute it and/or | ||||||
8 | * modify it under the terms of the GNU General Public License | ||||||
9 | * as published by the Free Software Foundation, either version 3 | ||||||
10 | * of the License, or (at your option) any later version. | ||||||
11 | * | ||||||
12 | * Jalview is distributed in the hope that it will be useful, but | ||||||
13 | * WITHOUT ANY WARRANTY; without even the implied warranty | ||||||
14 | * of MERCHANTABILITY or FITNESS FOR A PARTICULAR | ||||||
15 | * PURPOSE. See the GNU General Public License for more details. | ||||||
16 | * | ||||||
17 | * You should have received a copy of the GNU General Public License | ||||||
18 | * along with Jalview. If not, see <http://www.gnu.org/licenses/>. | ||||||
19 | * The Jalview Authors are detailed in the 'AUTHORS' file. | ||||||
20 | */ | ||||||
21 | package jalview.ws.uimodel; | ||||||
22 | |||||||
|
|||||||
23 | public class AlignAnalysisUIText | ||||||
24 | { | ||||||
25 | |||||||
26 | private String serviceType; | ||||||
27 | |||||||
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|||||||
28 | 0 | public String getServiceType()... | |||||
29 | { | ||||||
30 | 0 | return serviceType; | |||||
31 | } | ||||||
32 | |||||||
33 | private Class client; | ||||||
34 | |||||||
35 | private String calcId; | ||||||
36 | |||||||
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|||||||
37 | 0 | public String getCalcId()... | |||||
38 | { | ||||||
39 | 0 | return calcId; | |||||
40 | } | ||||||
41 | |||||||
42 | private String AAconToggle, AAconToggleTooltip, AAeditSettings, | ||||||
43 | AAeditSettingsTooltip; | ||||||
44 | |||||||
45 | private boolean isNa; | ||||||
46 | |||||||
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|||||||
47 | 0 | public boolean isNa()... | |||||
48 | { | ||||||
49 | 0 | return isNa; | |||||
50 | } | ||||||
51 | |||||||
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|||||||
52 | 0 | public boolean isPr()... | |||||
53 | { | ||||||
54 | 0 | return isPr; | |||||
55 | } | ||||||
56 | |||||||
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|||||||
57 | 0 | public boolean isAA()... | |||||
58 | { | ||||||
59 | 0 | return isAA; | |||||
60 | } | ||||||
61 | |||||||
62 | private boolean isPr; | ||||||
63 | |||||||
64 | private boolean isAA; | ||||||
65 | |||||||
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|||||||
66 | 12 | public AlignAnalysisUIText(String serviceType, Class<?> client,... | |||||
67 | String calcId, boolean acceptNucl, boolean acceptProt, | ||||||
68 | boolean acceptGaps, String toggle, String toggleTooltip, | ||||||
69 | String settings, String settingsTooltip) | ||||||
70 | { | ||||||
71 | 12 | this.serviceType = serviceType; | |||||
72 | 12 | this.calcId = calcId; | |||||
73 | 12 | isNa = acceptNucl; | |||||
74 | 12 | isPr = acceptProt; | |||||
75 | 12 | isAA = acceptGaps; | |||||
76 | 12 | this.client = client; | |||||
77 | 12 | this.AAconToggle = toggle; | |||||
78 | 12 | this.AAconToggleTooltip = toggleTooltip; | |||||
79 | 12 | this.AAeditSettings = settings; | |||||
80 | 12 | this.AAeditSettingsTooltip = settingsTooltip; | |||||
81 | } | ||||||
82 | |||||||
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|||||||
83 | 1818 | public Class getClient()... | |||||
84 | { | ||||||
85 | 1818 | return client; | |||||
86 | } | ||||||
87 | |||||||
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|||||||
88 | 0 | public void setClient(Class client)... | |||||
89 | { | ||||||
90 | 0 | this.client = client; | |||||
91 | } | ||||||
92 | |||||||
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|||||||
93 | 1803 | public String getAAconToggle()... | |||||
94 | { | ||||||
95 | 1803 | return AAconToggle; | |||||
96 | } | ||||||
97 | |||||||
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|||||||
98 | 0 | public void setAAconToggle(String aAconToggle)... | |||||
99 | { | ||||||
100 | 0 | AAconToggle = aAconToggle; | |||||
101 | } | ||||||
102 | |||||||
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|||||||
103 | 1803 | public String getAAconToggleTooltip()... | |||||
104 | { | ||||||
105 | 1803 | return AAconToggleTooltip; | |||||
106 | } | ||||||
107 | |||||||
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|||||||
108 | 0 | public void setAAconToggleTooltip(String aAconToggleTooltip)... | |||||
109 | { | ||||||
110 | 0 | AAconToggleTooltip = aAconToggleTooltip; | |||||
111 | } | ||||||
112 | |||||||
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|||||||
113 | 1803 | public String getAAeditSettings()... | |||||
114 | { | ||||||
115 | 1803 | return AAeditSettings; | |||||
116 | } | ||||||
117 | |||||||
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|||||||
118 | 0 | public void setAAeditSettings(String aAeditSettings)... | |||||
119 | { | ||||||
120 | 0 | AAeditSettings = aAeditSettings; | |||||
121 | } | ||||||
122 | |||||||
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|||||||
123 | 1803 | public String getAAeditSettingsTooltip()... | |||||
124 | { | ||||||
125 | 1803 | return AAeditSettingsTooltip; | |||||
126 | } | ||||||
127 | |||||||
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128 | 0 | public void setAAeditSettingsTooltip(String aAeditSettingsTooltip)... | |||||
129 | { | ||||||
130 | 0 | AAeditSettingsTooltip = aAeditSettingsTooltip; | |||||
131 | } | ||||||
132 | |||||||
133 | } |