Coverage Report
File RfamSeed.java
Coverage histogram
36% of files have more coverage
Classes
| Class | Line # | Actions | |||
|---|---|---|---|---|---|
| RfamSeed | 29 | 7 | 7 |
Contributing tests
This file is covered by 7 tests.
.
Source view
| 1 | /* | |
| 2 | * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) | |
| 3 | * Copyright (C) $$Year-Rel$$ The Jalview Authors | |
| 4 | * | |
| 5 | * This file is part of Jalview. | |
| 6 | * | |
| 7 | * Jalview is free software: you can redistribute it and/or | |
| 8 | * modify it under the terms of the GNU General Public License | |
| 9 | * as published by the Free Software Foundation, either version 3 | |
| 10 | * of the License, or (at your option) any later version. | |
| 11 | * | |
| 12 | * Jalview is distributed in the hope that it will be useful, but | |
| 13 | * WITHOUT ANY WARRANTY; without even the implied warranty | |
| 14 | * of MERCHANTABILITY or FITNESS FOR A PARTICULAR | |
| 15 | * PURPOSE. See the GNU General Public License for more details. | |
| 16 | * | |
| 17 | * You should have received a copy of the GNU General Public License | |
| 18 | * along with Jalview. If not, see <http://www.gnu.org/licenses/>. | |
| 19 | * The Jalview Authors are detailed in the 'AUTHORS' file. | |
| 20 | */ | |
| 21 | package jalview.ws.dbsources; | |
| 22 | ||
| 23 | /** | |
| 24 | * Flyweight class specifying retrieval of Seed family alignments from RFAM | |
| 25 | * | |
| 26 | * @author Lauren Michelle Lui | |
| 27 | * | |
| 28 | */ | |
| 29 | public class RfamSeed extends Rfam | |
| 30 | { | |
| 31 | 18 |  public RfamSeed() |
| 32 | { | |
| 33 | 18 | super(); |
| 34 | } | |
| 35 | ||
| 36 | 2 | @Override |
| 37 | public String getURLSuffix() | |
| 38 | { | |
| 39 | 2 | return "/alignment/stockholm" + GZIPPED; |
| 40 | } | |
| 41 | ||
| 42 | /* | |
| 43 | * (non-Javadoc) | |
| 44 | * | |
| 45 | * @see jalview.ws.seqfetcher.DbSourceProxy#getDbName() | |
| 46 | */ | |
| 47 | 48 | @Override |
| 48 | public String getDbName() | |
| 49 | { | |
| 50 | 48 | return "RFAM (Seed)"; |
| 51 | } | |
| 52 | ||
| 53 | 32 | @Override |
| 54 | public String getDbSource() | |
| 55 | { | |
| 56 | 32 | return getDbName(); // so we have unique DbSource string. |
| 57 | } | |
| 58 | ||
| 59 | 0 | @Override |
| 60 | public String getTestQuery() | |
| 61 | { | |
| 62 | 0 | return "RF00014"; |
| 63 | } // http://rfam.janelia.org/cgi-bin/getdesc?acc=RF00014 | |
| 64 | ||
| 65 | 0 | @Override |
| 66 | public String getDbVersion() | |
| 67 | { | |
| 68 | 0 | return null; |
| 69 | } | |
| 70 | ||
| 71 | 0 | @Override |
| 72 | public int getTier() | |
| 73 | { | |
| 74 | 0 | return 0; |
| 75 | } | |
| 76 | } |