Coverage Report
File VisibleRowsCollection.java
Coverage histogram
12% of files have more coverage
Classes
| Class | Line # | Actions | |||
|---|---|---|---|---|---|
| VisibleRowsCollection | 27 | 7 | 5 |
Contributing tests
This file is covered by 9 tests.
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Source view
| 1 | /* | |
| 2 | * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) | |
| 3 | * Copyright (C) $$Year-Rel$$ The Jalview Authors | |
| 4 | * | |
| 5 | * This file is part of Jalview. | |
| 6 | * | |
| 7 | * Jalview is free software: you can redistribute it and/or | |
| 8 | * modify it under the terms of the GNU General Public License | |
| 9 | * as published by the Free Software Foundation, either version 3 | |
| 10 | * of the License, or (at your option) any later version. | |
| 11 | * | |
| 12 | * Jalview is distributed in the hope that it will be useful, but | |
| 13 | * WITHOUT ANY WARRANTY; without even the implied warranty | |
| 14 | * of MERCHANTABILITY or FITNESS FOR A PARTICULAR | |
| 15 | * PURPOSE. See the GNU General Public License for more details. | |
| 16 | * | |
| 17 | * You should have received a copy of the GNU General Public License | |
| 18 | * along with Jalview. If not, see <http://www.gnu.org/licenses/>. | |
| 19 | * The Jalview Authors are detailed in the 'AUTHORS' file. | |
| 20 | */ | |
| 21 | package jalview.datamodel; | |
| 22 | ||
| 23 | import jalview.api.AlignmentRowsCollectionI; | |
| 24 | ||
| 25 | import java.util.Iterator; | |
| 26 | ||
| 27 | public class VisibleRowsCollection implements AlignmentRowsCollectionI | |
| 28 | { | |
| 29 | int start; | |
| 30 | ||
| 31 | int end; | |
| 32 | ||
| 33 | AlignmentI alignment; | |
| 34 | ||
| 35 | 346 |  public VisibleRowsCollection(int s, int e, AlignmentI al) |
| 36 | { | |
| 37 | 346 | start = s; |
| 38 | 346 | end = e; |
| 39 | 346 | alignment = al; |
| 40 | } | |
| 41 | ||
| 42 | 346 | @Override |
| 43 | public Iterator<Integer> iterator() | |
| 44 | { | |
| 45 | 346 | return new VisibleRowsIterator(start, end, alignment); |
| 46 | } | |
| 47 | ||
| 48 | 0 | @Override |
| 49 | public boolean isHidden(int seq) | |
| 50 | { | |
| 51 | 0 | return false; |
| 52 | } | |
| 53 | ||
| 54 | 2777 | @Override |
| 55 | public SequenceI getSequence(int seq) | |
| 56 | { | |
| 57 | 2777 | return alignment.getSequenceAtAbsoluteIndex(seq); |
| 58 | } | |
| 59 | ||
| 60 | 346 | @Override |
| 61 | public boolean hasHidden() | |
| 62 | { | |
| 63 | 346 | return false; |
| 64 | } | |
| 65 | } |