Build: #11 was successful Changes by Gitlab User
Code commits
Jalview Git
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Gitlab User f40edd5d97571d331bd03489ef67858bbb2595bf
JAL-4446 improved reporting of progress, and transition between cancelable and non-cancelable phases of pasimap calculation
- src/jalview/analysis/PaSiMap.java (version f40edd5d97571d331bd03489ef67858bbb2595bf) (diffs)
- src/jalview/gui/PaSiMapPanel.java (version f40edd5d97571d331bd03489ef67858bbb2595bf) (diffs)
- src/jalview/gui/PairwiseAlignPanel.java (version f40edd5d97571d331bd03489ef67858bbb2595bf) (diffs)
- src/jalview/gui/ProgressBar.java (version f40edd5d97571d331bd03489ef67858bbb2595bf) (diffs)
- src/jalview/viewmodel/PaSiMapModel.java (version f40edd5d97571d331bd03489ef67858bbb2595bf) (diffs)
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Gitlab User 30c13c1638967753f7b1f9c880a92cc7308b1278
JAL-4446 refactor progress listener handler code for reuse
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Gitlab User 6ec1491ad65b1a0d63eff8277677a8ecd5ab354d
Merge branch 'develop' into feature/JAL-4446_cancellable_pasimap_etal
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Gitlab User 356477aa523d0422c42e34c60cb98c9249ac4ed3 m
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Gitlab User 6a6a1654226d5c75406c3bcd95f646d0d9996f61 m
Merge branch 'feature/JAL-3631_allow_jalview_to_work_from_user-space_directory' into develop
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Ben Soares <b.soares@dundee.ac.uk> b9a24a3b7bacdc1f653b5de8b696e0892fa8f5c5 m
JAL-3631 Allow use of ~/ for unixBinDir specified in response.varfile
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Ben Soares <b.soares@dundee.ac.uk> 0f709498e152ee504198a378472a348a1d91590d m
JAL-3631 Allow unixBinDir (where a symbolic link gets made) to be set in response.varfile. If it's not set or empty then the usual (dynamic) default will be ascertained. Disallow reading in certain variables from the response.varfile that would just mess up the installation if changed.
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Ben Soares <b.soares@dundee.ac.uk> db28770c295fa1f8d4d2ae16931ee0bc2bfeb46e m
JAL-3631 Configuration tweaks if using the response.varfile
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Ben Soares <b.soares@dundee.ac.uk> acb90325e4fde76fbe1d67b80f451a76353908bd m
JAL-3631 Adjustments to allow setting the Advanced options in the response.varfile. Also big improvement on setting sys.fileAssociation.launchers automatically so only sys.fileAssociation.extensions needs to be set in a response.varfile.
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Ben Soares <b.soares@dundee.ac.uk> ac69832b3a877a4b43b9a75a1f1f9b31cb55abee m
JAL-3631 Fix interpolatove quotation marks in grep in jalview.sh. Fix some folder name trailing slash checks in macos_install_jalview.sh, add ditto -v and more informative output.
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Ben Soares <b.soares@dundee.ac.uk> b28a43feb85d380c9912cf67a80761f2ccd7fa9b m
JAL-3631 Fix interpolative quotation marks in new grep
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Gitlab User 88be27652649d3404aa05326e6a54fc221b65ab5 m
Merge branch 'jims/JAL-4420_review_redo' into develop
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Ben Soares <b.soares@dundee.ac.uk> 87ab843ae2e9afa891535b885d49d16ce6d1fce5 m
JAL-3631 When appdir/jre can't be found, look for the installer.appdir found in installer.properties (if it exists) and use jre dir in installer.appdir
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Ben Soares <b.soares@dundee.ac.uk> 451d5c6724dd5ed4c42f8546553f97e2e9b686da m
JAL-3631 Create an installer.properties file in the userappdir
- getdown/lib/getdown-core.jar (version 451d5c6724dd5ed4c42f8546553f97e2e9b686da) (diffs)
- getdown/lib/getdown-launcher-local.jar (version 451d5c6724dd5ed4c42f8546553f97e2e9b686da) (diffs)
- getdown/lib/getdown-launcher.jar (version 451d5c6724dd5ed4c42f8546553f97e2e9b686da) (diffs)
- getdown/src/getdown/core/src/main/java/com/threerings/getdown/data/Application.java (version 451d5c6724dd5ed4c42f8546553f97e2e9b686da) (diffs)
- getdown/src/getdown/core/src/main/java/com/threerings/getdown/data/EnvConfig.java (version 451d5c6724dd5ed4c42f8546553f97e2e9b686da) (diffs)
- j11lib/getdown-core.jar (version 451d5c6724dd5ed4c42f8546553f97e2e9b686da) (diffs)
- j8lib/getdown-core.jar (version 451d5c6724dd5ed4c42f8546553f97e2e9b686da) (diffs)
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Gitlab User 85e30a861f26369f9be8cffa4a1345c79092a895 m
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Gitlab User 1b68541c7d4b464f8165ca3dbdc5916ef6cf8c19 m
JAL-4420 new drag'n'drop behaviour is now an 'Experimental Feature'
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Gitlab User ee4305f7cad84f8c254c8709b9da8621a2f18872 m
JAL-4420 report exceptions raised during a drop rather than swallowing them
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Gitlab User 6ce6f76a29779263ce810e0875b8050d25cbd0bb m
JAL-4418 release notes for JAL-4398 and rejigged order a bit
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Gitlab User 7e3271b6887c1674671dfc13725df09251177946 m
Merge branch 'bug/JAL-4398_Window_menu_font_rendering' into develop
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Gitlab User be1250ac8d031ee2501458377a6672b5dd4a4941 m
Merge branch 'develop' into bug/JAL-4449_ensembl_sequence_retrieval_broken
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Gitlab User ab788613300c36da80e7d37f946d699b19d562dd m
JAL-4449 signed off and also updated Ensembl REST API version after fixing the EnsemblGene BRAF query test: JAL-3018
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Gitlab User a7218e71d8f55d564051673bc4ba8519315220aa m
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Ben Soares <b.soares@dundee.ac.uk> d575022e7f98391bca61ec8e70d01b7b61d5efd5 m
JAL-4449 Changed HttpUtils.followConnection(conn0) to return conn0 unused when there is not a redirect from http to https, otherwise to return a new unused connection directly to the new https URL
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Gitlab User cec9228733938df22e2332849ce72dccaec3c89c m
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Gitlab User 894e28b96fbe246ffeba3f834f2b30f06a4ec0f8 m
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Ben Soares <b.soares@dundee.ac.uk> b3aa009895567ae6c7131c2c09aefb7def40fc7a m
JAL-3631 Change macos-install-jalview.sh to use ditto instead of rsync. Localise function vars.
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Ben Soares <b.soares@dundee.ac.uk> 30246584379baffaa0d7467f4362104a7187d074 m
JAL-3631 Fix EnvConfig.getUserAppdir() in getdown when running the getdown-launcher.jar update
- getdown/lib/FJVL_VERSION (version 30246584379baffaa0d7467f4362104a7187d074) (diffs)
- getdown/lib/JVL_VERSION (version 30246584379baffaa0d7467f4362104a7187d074) (diffs)
- getdown/lib/getdown-core.jar (version 30246584379baffaa0d7467f4362104a7187d074) (diffs)
- getdown/lib/getdown-launcher-local.jar (version 30246584379baffaa0d7467f4362104a7187d074) (diffs)
- getdown/lib/getdown-launcher.jar (version 30246584379baffaa0d7467f4362104a7187d074) (diffs)
- getdown/src/getdown/ant/pom.xml (version 30246584379baffaa0d7467f4362104a7187d074) (diffs)
- getdown/src/getdown/core/pom.xml (version 30246584379baffaa0d7467f4362104a7187d074) (diffs)
- getdown/src/getdown/core/src/main/java/com/threerings/getdown/data/EnvConfig.java (version 30246584379baffaa0d7467f4362104a7187d074) (diffs)
- getdown/src/getdown/core/src/main/java/jalview/bin/GetdownLauncherUpdate.java (version 30246584379baffaa0d7467f4362104a7187d074) (diffs)
- getdown/src/getdown/core/src/main/java/jalview/util/ErrorLog.java (version 30246584379baffaa0d7467f4362104a7187d074) (diffs)
- getdown/src/getdown/core/src/main/java/jalview/util/LaunchUtils.java (version 30246584379baffaa0d7467f4362104a7187d074) (diffs)
- getdown/src/getdown/launcher/pom.xml (version 30246584379baffaa0d7467f4362104a7187d074) (diffs)
- getdown/src/getdown/mvn_cmd (version 30246584379baffaa0d7467f4362104a7187d074) (diffs)
- getdown/src/getdown/pom.xml (version 30246584379baffaa0d7467f4362104a7187d074) (diffs)
- j11lib/getdown-core.jar (version 30246584379baffaa0d7467f4362104a7187d074) (diffs)
- j8lib/getdown-core.jar (version 30246584379baffaa0d7467f4362104a7187d074) (diffs)
- src/jalview/bin/GetdownLauncherUpdate.java (version 30246584379baffaa0d7467f4362104a7187d074) (diffs)
- src/jalview/util/LaunchUtils.java (version 30246584379baffaa0d7467f4362104a7187d074) (diffs)
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Ben Soares <b.soares@dundee.ac.uk> 178aa13090b05c788cd00a580989c2528b47be7d m
JAL-3631 Create a jalview_x_update link in appdir/bin alongside jalview_x in install4j wizard
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Ben Soares <b.soares@dundee.ac.uk> f13e674270b352c13e89a390e3cb613dc022358c m
Merge branch 'develop' into feature/JAL-3631_allow_jalview_to_work_from_user-space_directory
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Ben Soares <b.soares@dundee.ac.uk> 614431e4e8a5c49c71a22444b2b2a352cab6b592 m
Merge branch 'develop' into feature/JAL-3631_allow_jalview_to_work_from_user-space_directory
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Ben Soares <b.soares@dundee.ac.uk> 0f805a31db48d5fa56f53bb6f7da5efd81b70992 m
JAL-3631 Better messaging and a root check on updating the --installation
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Ben Soares <b.soares@dundee.ac.uk> e3900f3622434ea40131b00e0c3562d31cfdeaf8 m
JAL-3631 Change name of update link in DMGs. Correct wrong message in macos installer script. Adding build_properties and channel.props into hidden folder on DMG. I'm sure they will be useful!
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Ben Soares <b.soares@dundee.ac.uk> 8183ef1205ddc7ddc2aa40def6e81917c9c23940 m
JAL-4398 Instantiate (static) JMenu windowMenu at the same time as the other (instance) JMenus for same context (FlatLaf?) settings