Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
EnsemblSeqProxyAdapter	33	6	6	0.00%	Show methods

Class EnsemblSeqProxyAdapter

Class EnsemblSeqProxyAdapter	Line # 33	Total Statements 6	Complexity 6	TOTAL Coverage 0.00%
EnsemblSeqProxyAdapter()   EnsemblSeqProxyAdapter()	3838	1.01	1.01	0.0 0.00%
EnsemblSeqProxyAdapter(String)   EnsemblSeqProxyAdapter(String)	4848	1.01	1.01	0.0 0.00%
getDbName() : String   getDbName() : String	5353	1.01	1.01	0.0 0.00%
getFeaturesToFetch() : EnsemblFeatureType[]   getFeaturesToFetch() : EnsemblFeatureType[]	5959	1.01	1.01	0.0 0.00%
getSourceEnsemblType() : EnsemblSeqType   getSourceEnsemblType() : EnsemblSeqType	6565	1.01	1.01	0.0 0.00%
getIdentifyingFeatures(SequenceI,String) : List<SequenceFeature>   getIdentifyingFeatures(SequenceI,String) : List<SequenceFeature>	7171	1.01	1.01	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.ext.ensembl;
22
23		import jalview.datamodel.SequenceFeature;
24		import jalview.datamodel.SequenceI;
25
26		import java.util.ArrayList;
27		import java.util.List;
28
29		/**
30		* A convenience class to simplify writing unit tests (pending Mockito or
31		* similar?)
32		*/
		0% Uncovered Elements: 12 (12) Complexity: 6 Complexity Density: 1
33		public class EnsemblSeqProxyAdapter extends EnsemblSeqProxy
34		{
35		/**
36		* Default constructor (to use rest.ensembl.org)
37		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
38	0	public EnsemblSeqProxyAdapter()...
39		{
40	0	super();
41		}
42
43		/**
44		* Constructor given the target domain to fetch data from
45		*
46		* @param d
47		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
48	0	public EnsemblSeqProxyAdapter(String d)...
49		{
50	0	super(d);
51		}
52
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
53	0	@Override...
54		public String getDbName()
55		{
56	0	return null;
57		}
58
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
59	0	@Override...
60		protected EnsemblFeatureType[] getFeaturesToFetch()
61		{
62	0	return null;
63		}
64
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
65	0	@Override...
66		protected EnsemblSeqType getSourceEnsemblType()
67		{
68	0	return null;
69		}
70
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
71	0	@Override...
72		protected List<SequenceFeature> getIdentifyingFeatures(SequenceI seq,
73		String accId)
74		{
75	0	return new ArrayList<>();
76		}
77
78		}