Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
JabaOption	32	14	13	0.00%	Show methods

Class JabaOption

Class JabaOption	Line # 32	Total Statements 14	Complexity 13	TOTAL Coverage 0.00%
JabaOption(Option)   JabaOption(Option)	3434	1.01	1.01	0.0 0.00%
getValue() : String   getValue() : String	4141	1.01	1.01	0.0 0.00%
getName() : String   getName() : String	4747	1.01	1.01	0.0 0.00%
getFurtherDetails() : URL   getFurtherDetails() : URL	5353	3.03	3.03	0.0 0.00%
isRequired() : boolean   isRequired() : boolean	6969	1.01	1.01	0.0 0.00%
getDescription() : String   getDescription() : String	7575	1.01	1.01	0.0 0.00%
getPossibleValues() : List<String>   getPossibleValues() : List<String>	8181	1.01	1.01	0.0 0.00%
setValue(String) : void   setValue(String) : void	8888	3.03	2.02	0.0 0.00%
copy() : OptionI   copy() : OptionI	102102	1.01	1.01	0.0 0.00%
getOption() : Option   getOption() : Option	114114	1.01	1.01	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.ws.jws2.dm;
22
23		import java.net.MalformedURLException;
24		import java.net.URL;
25		import java.util.List;
26
27		import compbio.metadata.Option;
28		import jalview.util.MessageManager;
29		import jalview.ws.jws2.ParameterUtils;
30		import jalview.ws.params.OptionI;
31
		0% Uncovered Elements: 24 (24) Complexity: 13 Complexity Density: 0.93
32		public class JabaOption implements jalview.ws.params.OptionI
33		{
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
34	0	public JabaOption(Option rg)...
35		{
36	0	opt = rg;
37		}
38
39		Option opt;
40
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
41	0	@Override...
42		public String getValue()
43		{
44	0	return opt.getDefaultValue();
45		}
46
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
47	0	@Override...
48		public String getName()
49		{
50	0	return opt.getName();
51		}
52
		0% Uncovered Elements: 3 (3) Complexity: 3 Complexity Density: 1
53	0	@Override...
54		public URL getFurtherDetails()
55		{
56	0	try
57		{
58	0	return new URL(opt.getBasicURL().toExternalForm() + "/"
59		+ opt.getFurtherDetails());
60		} catch (NullPointerException q)
61		{
62		} catch (MalformedURLException q)
63		{
64
65		}
66	0	return null;
67		}
68
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
69	0	@Override...
70		public boolean isRequired()
71		{
72	0	return opt.isRequired();
73		}
74
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
75	0	@Override...
76		public String getDescription()
77		{
78	0	return opt.getDescription();
79		}
80
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
81	0	@Override...
82		public List<String> getPossibleValues()
83		{
84		// TODO: assert typesafety
85	0	return opt.getPossibleValues();
86		}
87
		0% Uncovered Elements: 3 (3) Complexity: 2 Complexity Density: 0.67
88	0	@Override...
89		public void setValue(String selectedItem)
90		{
91	0	try
92		{
93	0	opt.setDefaultValue(selectedItem);
94		} catch (Exception e)
95		{
96	0	throw new IllegalArgumentException(MessageManager
97		.formatMessage("error.invalid_value_for_option", new String[]
98		{ selectedItem, opt.getName() }));
99		}
100		}
101
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
102	0	@Override...
103		public OptionI copy()
104		{
105	0	return new JabaOption(ParameterUtils.copyOption(opt));
106		}
107
108		/**
109		* get the underlying Jaba option or parameter object. Note - use copy first
110		* if you want to modify the value of the option.
111		*
112		* @return
113		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
114	0	public Option getOption()...
115		{
116	0	return opt;
117		}
118
119		}