Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
AlignCalcManagerTest	46	34	8	1.0100%	Show methods

Class AlignCalcManagerTest

Class AlignCalcManagerTest	Line # 46	Total Statements 34	Complexity 8	TOTAL Coverage 1.0100%
setUpJvOptionPane() : void   setUpJvOptionPane() : void	4949	2.02	1.01	1.0 1.0100%
testRemoveWorkerForAnnotation() : void   testRemoveWorkerForAnnotation() : void	6363	24.024	2.02	1.0 1.0100%
calculateAnnotation(AlignmentI,FeatureRenderer) : List<AlignmentAnnotation>   calculateAnnotation(AlignmentI,FeatureRenderer) : List<AlignmentAnnotation>	143143	1.01	1.01	1.0 1.0100%
isDeletable() : boolean   isDeletable() : boolean	153153	1.01	1.01	1.0 1.0100%
involves(AlignmentAnnotation) : boolean   involves(AlignmentAnnotation) : boolean	159159	1.01	1.01	1.0 1.0100%
makeWorker(AlignmentAnnotation,boolean) : AnnotationWorker   makeWorker(AlignmentAnnotation,boolean) : AnnotationWorker	138138	2.02	1.01	1.0 1.0100%
setUp() : void   setUp() : void	167167	3.03	1.01	1.0 1.0100%

 

Contributing tests

Contributing tests

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	Test contribution	Test	Result	Actions
	0.8292683	jalview.workers.AlignCalcManagerTest.testRemoveWorkerForAnnotationjalview.workers.AlignCalcManagerTest.testRemoveWorkerForAnnotation	1PASS

 

Source view

1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.workers;
22
23		import static org.testng.AssertJUnit.assertEquals;
24		import static org.testng.AssertJUnit.assertFalse;
25		import static org.testng.AssertJUnit.assertTrue;
26
27		import jalview.api.AlignCalcManagerI;
28		import jalview.api.AlignCalcWorkerI;
29		import jalview.api.FeatureRenderer;
30		import jalview.datamodel.Alignment;
31		import jalview.datamodel.AlignmentAnnotation;
32		import jalview.datamodel.AlignmentI;
33		import jalview.datamodel.Annotation;
34		import jalview.datamodel.Sequence;
35		import jalview.datamodel.SequenceI;
36		import jalview.gui.AlignFrame;
37		import jalview.gui.JvOptionPane;
38
39		import java.util.Collections;
40		import java.util.List;
41
42		import org.testng.annotations.BeforeClass;
43		import org.testng.annotations.BeforeMethod;
44		import org.testng.annotations.Test;
45
		100% Uncovered Elements: 0 (41) Complexity: 8 Complexity Density: 0.24
46		public class AlignCalcManagerTest
47		{
48
		100% Uncovered Elements: 0 (2) Complexity: 1 Complexity Density: 0.5
49	1	@BeforeClass(alwaysRun = true)...
50		public void setUpJvOptionPane()
51		{
52	1	JvOptionPane.setInteractiveMode(false);
53	1	JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
54		}
55
56		private AlignFrame alignFrame;
57
58		/**
59		* Test the method that removes a worker associated with an annotation,
60		* provided the worker is marked as 'deletable' (some workers should continue
61		* to run even when their results are no longer displayed)
62		*/
		100% Uncovered Elements: 0 (24) Complexity: 2 Complexity Density: 0.08 1PASS
63	1	@Test(groups = "Functional")...
64		public void testRemoveWorkerForAnnotation()
65		{
66	1	AlignCalcManagerI acm = alignFrame.getViewport().getCalcManager();
67	1	final AlignmentAnnotation ann1 = new AlignmentAnnotation("Ann1", "desc",
68		new Annotation[] {});
69	1	final AlignmentAnnotation ann2 = new AlignmentAnnotation("Ann2", "desc",
70		new Annotation[] {});
71
72		/*
73		* make two workers for ann1, one deletable, one not
74		* and no worker for ann2
75		*/
76	1	AlignCalcWorkerI worker1 = makeWorker(ann1, true);
77	1	AlignCalcWorkerI worker2 = makeWorker(ann1, false);
78
79		/*
80		* The new workers will get run each in their own thread.
81		* We can't tell here whether they have finished, or not yet started.
82		* They have to finish to be 'seen' by getRegisteredWorkersOfClass()
83		* registerWorker adds to the 'restartable' list but
84		* getRegisteredWorkers reads from the 'canUpdate' list
85		* (which is only updated after a worker has run) - why?
86		* So just give workers time to start and finish
87		*/
88	1	synchronized (this)
89		{
90	1	try
91		{
92	1	wait(100);
93		} catch (InterruptedException e)
94		{
95		//
96		}
97		}
98
99	1	List<AlignCalcWorkerI> workers = acm
100		.getRegisteredWorkersOfClass(worker1.getClass());
101	1	assertEquals(2, workers.size());
102	1	assertTrue(workers.contains(worker1));
103	1	assertTrue(workers.contains(worker2));
104	1	assertFalse(acm.isDisabled(worker1));
105	1	assertFalse(acm.isDisabled(worker2));
106
107		/*
108		* remove workers for ann2 (there aren't any)
109		*/
110	1	acm.removeWorkerForAnnotation(ann2);
111	1	assertTrue(acm.getRegisteredWorkersOfClass(worker1.getClass())
112		.contains(worker1));
113	1	assertTrue(acm.getRegisteredWorkersOfClass(worker1.getClass())
114		.contains(worker2));
115	1	assertFalse(acm.isDisabled(worker1));
116	1	assertFalse(acm.isDisabled(worker2));
117
118		/*
119		* remove worker2 for ann1
120		* - should delete worker1 but not worker2
121		*/
122	1	acm.removeWorkerForAnnotation(ann1);
123	1	assertEquals(1,
124		acm.getRegisteredWorkersOfClass(worker1.getClass()).size());
125	1	assertTrue(acm.getRegisteredWorkersOfClass(worker1.getClass())
126		.contains(worker2));
127	1	assertFalse(acm.isDisabled(worker1));
128	1	assertFalse(acm.isDisabled(worker2));
129		}
130
131		/**
132		* Make a worker linked to the given annotation
133		*
134		* @param ann
135		* @param deletable
136		* @return
137		*/
		100% Uncovered Elements: 0 (2) Complexity: 1 Complexity Density: 0.5
138	2	AnnotationWorker makeWorker(final AlignmentAnnotation ann,...
139		final boolean deletable)
140		{
141	2	AnnotationProviderI annotationProvider = new AnnotationProviderI()
142		{
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
143	2	@Override...
144		public List<AlignmentAnnotation> calculateAnnotation(AlignmentI al,
145		FeatureRenderer fr)
146		{
147	2	return Collections.singletonList(ann);
148		}
149		};
150	2	return new AnnotationWorker(alignFrame.getViewport(),
151		alignFrame.alignPanel, annotationProvider)
152		{
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
153	2	@Override...
154		public boolean isDeletable()
155		{
156	2	return deletable;
157		}
158
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
159	4	@Override...
160		public boolean involves(AlignmentAnnotation ann1)
161		{
162	4	return ann == ann1;
163		}
164		};
165		}
166
		100% Uncovered Elements: 0 (3) Complexity: 1 Complexity Density: 0.33
167	1	@BeforeMethod(alwaysRun = true)...
168		public void setUp()
169		{
170	1	AlignmentI al = new Alignment(
171		new SequenceI[]
172		{ new Sequence("Seq1", "ABC") });
173	1	al.setDataset(null);
174	1	alignFrame = new AlignFrame(al, 3, 1);
175		}
176		}