Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
Constants	29	2	1	1.0100%	Show methods

Class Constants

Class Constants	Line # 29	Total Statements 2	Complexity 1	TOTAL Coverage 1.0100%
<clinit>, line 46()   <clinit>, line 46()	4646	2.02	1.01	1.0 1.0100%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.util;
22
23		import java.util.HashMap;
24		import java.util.Map;
25
26		/**
27		* A class to hold constants relating to Url links used in Jalview
28		*/
		100% Uncovered Elements: 0 (3) Complexity: 1 Complexity Density: 0.5
29		public class Constants
30		{
31
32		// character used to represent secondary structures
33		public static final char HELIX = 'H';
34
35		public static final char SHEET = 'E';
36
37		public static final char COIL = 'C';
38
39		// label in secondary structure annotation data model from 3d structures
40		public static final String SS_ANNOTATION_LABEL = "Secondary Structure";
41
42		// label in secondary structure annotation data model from JPred
43		public static final String SS_ANNOTATION_FROM_JPRED_LABEL = "jnetpred";
44
45		public static final Map<String, String> SECONDARY_STRUCTURE_LABELS = new HashMap<>();
		100% Uncovered Elements: 0 (2) Complexity: 1 Complexity Density: 0.5
46	4	static...
47		{
48	4	SECONDARY_STRUCTURE_LABELS.put(SS_ANNOTATION_LABEL, "3D Structures");
49	4	SECONDARY_STRUCTURE_LABELS.put(SS_ANNOTATION_FROM_JPRED_LABEL, "JPred");
50		// Add other secondary structure labels here if needed
51		}
52		}