Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
DesktopTests	63	26	9	0.941176594.1%	Show methods

Class DesktopTests

Class DesktopTests	Line # 63	Total Statements 26	Complexity 9	TOTAL Coverage 0.941176594.1%
setUpBeforeClass() : void   setUpBeforeClass() : void	6666	3.03	1.01	1.0 1.0100%
tearDown() : void   tearDown() : void	7777	1.01	1.01	1.0 1.0100%
loadTestFile() : AlignFrame   loadTestFile() : AlignFrame	8888	7.07	3.03	0.8888889 0.888888988.9%
setUpJvOptionPane() : void   setUpJvOptionPane() : void	111111	2.02	1.01	1.0 1.0100%
run() : void   run() : void	126126	3.03	1.01	1.0 1.0100%
testInternalCopyPaste() : void   testInternalCopyPaste() : void	117117	10.010	2.02	0.9 0.990%

 

Contributing tests

Contributing tests

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	Test contribution	Test	Result	Actions
	0.6764706	jalview.gui.DesktopTests.testInternalCopyPastejalview.gui.DesktopTests.testInternalCopyPaste	1PASS

 

Source view

1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.gui;
22
23		import static org.junit.Assert.assertNotEquals;
24		import static org.testng.Assert.assertEquals;
25		import static org.testng.Assert.assertFalse;
26		import static org.testng.Assert.assertNotSame;
27		import static org.testng.Assert.assertSame;
28		import static org.testng.Assert.assertTrue;
29
30		import java.awt.Color;
31		import java.util.Iterator;
32
33		import javax.swing.SwingUtilities;
34
35		import org.junit.Assert;
36		import org.testng.annotations.AfterMethod;
37		import org.testng.annotations.BeforeClass;
38		import org.testng.annotations.BeforeMethod;
39		import org.testng.annotations.Test;
40
41		import jalview.api.FeatureColourI;
42		import jalview.bin.Cache;
43		import jalview.bin.Jalview;
44		import jalview.datamodel.Alignment;
45		import jalview.datamodel.AlignmentI;
46		import jalview.datamodel.HiddenColumns;
47		import jalview.datamodel.Sequence;
48		import jalview.datamodel.SequenceFeature;
49		import jalview.datamodel.SequenceGroup;
50		import jalview.datamodel.SequenceI;
51		import jalview.io.DataSourceType;
52		import jalview.io.FileLoader;
53		import jalview.project.Jalview2xmlTests;
54		import jalview.renderer.ResidueShaderI;
55		import jalview.schemes.BuriedColourScheme;
56		import jalview.schemes.FeatureColour;
57		import jalview.schemes.HelixColourScheme;
58		import jalview.schemes.JalviewColourScheme;
59		import jalview.schemes.StrandColourScheme;
60		import jalview.schemes.TurnColourScheme;
61		import jalview.util.MessageManager;
62
		94.1% Uncovered Elements: 2 (34) Complexity: 9 Complexity Density: 0.35
63		public class DesktopTests
64		{
65
		100% Uncovered Elements: 0 (3) Complexity: 1 Complexity Density: 0.33
66	1	@BeforeClass(alwaysRun = true)...
67		public static void setUpBeforeClass() throws Exception
68		{
69	1	setUpJvOptionPane();
70		/*
71		* use read-only test properties file
72		*/
73	1	Cache.loadProperties("test/jalview/io/testProps.jvprops");
74	1	Jalview.main(new String[] { "--nonews" });
75		}
76
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
77	1	@AfterMethod(alwaysRun = true)...
78		public void tearDown()
79		{
80	1	Desktop.instance.closeAll_actionPerformed(null);
81		}
82
83		/**
84		*
85		* configure (read-only) properties for test to ensure Consensus is computed
86		* for colour Above PID testing
87		*/
		88.9% Uncovered Elements: 1 (9) Complexity: 3 Complexity Density: 0.43
88	1	public AlignFrame loadTestFile()...
89		{
90	1	Cache.loadProperties("test/jalview/io/testProps.jvprops");
91	1	Cache.applicationProperties.setProperty("SHOW_IDENTITY",
92		Boolean.TRUE.toString());
93	1	AlignFrame af = new FileLoader().LoadFileWaitTillLoaded(
94		"examples/uniref50.fa", DataSourceType.FILE);
95
96		/*
97		* wait for Consensus thread to complete
98		*/
99	1	do
100		{
101	1	try
102		{
103	1	Thread.sleep(50);
104		} catch (InterruptedException x)
105		{
106		}
107	1	} while (af.getViewport().getCalcManager().isWorking());
108	1	return af;
109		}
110
		100% Uncovered Elements: 0 (2) Complexity: 1 Complexity Density: 0.5
111	1	public static void setUpJvOptionPane()...
112		{
113	1	JvOptionPane.setInteractiveMode(false);
114	1	JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
115		}
116
		90% Uncovered Elements: 1 (10) Complexity: 2 Complexity Density: 0.2 1PASS
117	1	@Test(groups = { "Functional" })...
118		public void testInternalCopyPaste()
119		{
120	1	AlignFrame internalSource = loadTestFile();
121
122	1	try
123		{
124	1	SwingUtilities.invokeAndWait(new Runnable()
125		{
		100% Uncovered Elements: 0 (3) Complexity: 1 Complexity Density: 0.33
126	1	@Override...
127		public void run()
128		{
129	1	internalSource.selectAllSequenceMenuItem_actionPerformed(null);
130	1	internalSource.copy_actionPerformed();
131	1	Desktop.instance.paste();
132		}
133		});
134		} catch (Exception x)
135		{
136	0	Assert.fail("Unexpected exception " + x);
137		}
138	1	AlignFrame[] alfs = Desktop.getDesktopAlignFrames();
139	1	Assert.assertEquals("Expect just 2 alignment frames", 2, alfs.length);
140		// internal paste should yield a new alignment window with shared dataset
141	1	AlignmentI dataset = internalSource.getViewport().getAlignment()
142		.getDataset();
143	1	Assert.assertNotNull(dataset);
144
145	1	for (AlignFrame alf : alfs)
146		{
147	2	Assert.assertTrue(
148		"Internal paste should yield alignment with same dataset.",
149		dataset == alf.getViewport().getAlignment().getDataset());
150		}
151
152		}
153		}