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Coverage Report

  1. Project Clover database Wed Jun 18 2025 15:09:16 BST
  2. Package ext.vamsas

File SeqSearchServiceSoapBindingStub.java

 

Coverage histogram

../../img/srcFileCovDistChart0.png
59% of files have more coverage

Code metrics

40
236
11
1
506
439
37
0.16
21.45
11
3.36

Classes

Class Line # Actions
SeqSearchServiceSoapBindingStub 23 236 37
0.00%
 

Contributing tests

No tests hitting this source file were found.

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1    /*
2    * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3    * Copyright (C) $$Year-Rel$$ The Jalview Authors
4    *
5    * This file is part of Jalview.
6    *
7    * Jalview is free software: you can redistribute it and/or
8    * modify it under the terms of the GNU General Public License
9    * as published by the Free Software Foundation, either version 3
10    * of the License, or (at your option) any later version.
11    *
12    * Jalview is distributed in the hope that it will be useful, but
13    * WITHOUT ANY WARRANTY; without even the implied warranty
14    * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15    * PURPOSE. See the GNU General Public License for more details.
16    *
17    * You should have received a copy of the GNU General Public License
18    * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19    * The Jalview Authors are detailed in the 'AUTHORS' file.
20    */
21    package ext.vamsas;
22   
 
23    public class SeqSearchServiceSoapBindingStub
24    extends org.apache.axis.client.Stub implements ext.vamsas.SeqSearchI
25    {
26    private java.util.Vector cachedSerClasses = new java.util.Vector();
27   
28    private java.util.Vector cachedSerQNames = new java.util.Vector();
29   
30    private java.util.Vector cachedSerFactories = new java.util.Vector();
31   
32    private java.util.Vector cachedDeserFactories = new java.util.Vector();
33   
34    static org.apache.axis.description.OperationDesc[] _operations;
35   
 
36  0 toggle static
37    {
38  0 _operations = new org.apache.axis.description.OperationDesc[5];
39  0 _initOperationDesc1();
40    }
41   
 
42  0 toggle private static void _initOperationDesc1()
43    {
44  0 org.apache.axis.description.OperationDesc oper;
45  0 oper = new org.apache.axis.description.OperationDesc();
46  0 oper.setName("getDatabase");
47  0 oper.setReturnType(new javax.xml.namespace.QName(
48    "http://www.w3.org/2001/XMLSchema", "string"));
49  0 oper.setReturnClass(java.lang.String.class);
50  0 oper.setReturnQName(
51    new javax.xml.namespace.QName("", "getDatabaseReturn"));
52  0 oper.setStyle(org.apache.axis.constants.Style.RPC);
53  0 oper.setUse(org.apache.axis.constants.Use.ENCODED);
54  0 _operations[0] = oper;
55   
56  0 oper = new org.apache.axis.description.OperationDesc();
57  0 oper.setName("getResult");
58  0 oper.addParameter(new javax.xml.namespace.QName("", "job_id"),
59    new javax.xml.namespace.QName(
60    "http://www.w3.org/2001/XMLSchema", "string"),
61    java.lang.String.class,
62    org.apache.axis.description.ParameterDesc.IN, false, false);
63  0 oper.setReturnType(new javax.xml.namespace.QName(
64    "simple.objects.vamsas", "SeqSearchResult"));
65  0 oper.setReturnClass(vamsas.objects.simple.SeqSearchResult.class);
66  0 oper.setReturnQName(
67    new javax.xml.namespace.QName("", "getResultReturn"));
68  0 oper.setStyle(org.apache.axis.constants.Style.RPC);
69  0 oper.setUse(org.apache.axis.constants.Use.ENCODED);
70  0 _operations[1] = oper;
71   
72  0 oper = new org.apache.axis.description.OperationDesc();
73  0 oper.setName("psearch");
74  0 oper.addParameter(new javax.xml.namespace.QName("", "al"),
75    new javax.xml.namespace.QName("simple.objects.vamsas",
76    "Alignment"),
77    vamsas.objects.simple.Alignment.class,
78    org.apache.axis.description.ParameterDesc.IN, false, false);
79  0 oper.addParameter(new javax.xml.namespace.QName("", "database"),
80    new javax.xml.namespace.QName(
81    "http://www.w3.org/2001/XMLSchema", "string"),
82    java.lang.String.class,
83    org.apache.axis.description.ParameterDesc.IN, false, false);
84  0 oper.setReturnType(new javax.xml.namespace.QName(
85    "simple.objects.vamsas", "WsJobId"));
86  0 oper.setReturnClass(vamsas.objects.simple.WsJobId.class);
87  0 oper.setReturnQName(new javax.xml.namespace.QName("", "psearchReturn"));
88  0 oper.setStyle(org.apache.axis.constants.Style.RPC);
89  0 oper.setUse(org.apache.axis.constants.Use.ENCODED);
90  0 _operations[2] = oper;
91   
92  0 oper = new org.apache.axis.description.OperationDesc();
93  0 oper.setName("search");
94  0 oper.addParameter(new javax.xml.namespace.QName("", "s"),
95    new javax.xml.namespace.QName("simple.objects.vamsas",
96    "Sequence"),
97    vamsas.objects.simple.Sequence.class,
98    org.apache.axis.description.ParameterDesc.IN, false, false);
99  0 oper.addParameter(new javax.xml.namespace.QName("", "database"),
100    new javax.xml.namespace.QName(
101    "http://www.w3.org/2001/XMLSchema", "string"),
102    java.lang.String.class,
103    org.apache.axis.description.ParameterDesc.IN, false, false);
104  0 oper.setReturnType(new javax.xml.namespace.QName(
105    "simple.objects.vamsas", "WsJobId"));
106  0 oper.setReturnClass(vamsas.objects.simple.WsJobId.class);
107  0 oper.setReturnQName(new javax.xml.namespace.QName("", "searchReturn"));
108  0 oper.setStyle(org.apache.axis.constants.Style.RPC);
109  0 oper.setUse(org.apache.axis.constants.Use.ENCODED);
110  0 _operations[3] = oper;
111   
112  0 oper = new org.apache.axis.description.OperationDesc();
113  0 oper.setName("cancel");
114  0 oper.addParameter(new javax.xml.namespace.QName("", "jobId"),
115    new javax.xml.namespace.QName(
116    "http://www.w3.org/2001/XMLSchema", "string"),
117    java.lang.String.class,
118    org.apache.axis.description.ParameterDesc.IN, false, false);
119  0 oper.setReturnType(new javax.xml.namespace.QName(
120    "simple.objects.vamsas", "WsJobId"));
121  0 oper.setReturnClass(vamsas.objects.simple.WsJobId.class);
122  0 oper.setReturnQName(new javax.xml.namespace.QName("", "cancelReturn"));
123  0 oper.setStyle(org.apache.axis.constants.Style.RPC);
124  0 oper.setUse(org.apache.axis.constants.Use.ENCODED);
125  0 _operations[4] = oper;
126   
127    }
128   
 
129  0 toggle public SeqSearchServiceSoapBindingStub() throws org.apache.axis.AxisFault
130    {
131  0 this(null);
132    }
133   
 
134  0 toggle public SeqSearchServiceSoapBindingStub(java.net.URL endpointURL,
135    javax.xml.rpc.Service service) throws org.apache.axis.AxisFault
136    {
137  0 this(service);
138  0 super.cachedEndpoint = endpointURL;
139    }
140   
 
141  0 toggle public SeqSearchServiceSoapBindingStub(javax.xml.rpc.Service service)
142    throws org.apache.axis.AxisFault
143    {
144  0 if (service == null)
145    {
146  0 super.service = new org.apache.axis.client.Service();
147    }
148    else
149    {
150  0 super.service = service;
151    }
152  0 java.lang.Class cls;
153  0 javax.xml.namespace.QName qName;
154  0 java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;
155  0 java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;
156  0 java.lang.Class enumsf = org.apache.axis.encoding.ser.EnumSerializerFactory.class;
157  0 java.lang.Class enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class;
158  0 java.lang.Class arraysf = org.apache.axis.encoding.ser.ArraySerializerFactory.class;
159  0 java.lang.Class arraydf = org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;
160  0 java.lang.Class simplesf = org.apache.axis.encoding.ser.SimpleSerializerFactory.class;
161  0 java.lang.Class simpledf = org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;
162  0 java.lang.Class simplelistsf = org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;
163  0 java.lang.Class simplelistdf = org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;
164  0 qName = new javax.xml.namespace.QName("simple.objects.vamsas",
165    "Result");
166  0 cachedSerQNames.add(qName);
167  0 cls = vamsas.objects.simple.Result.class;
168  0 cachedSerClasses.add(cls);
169  0 cachedSerFactories.add(beansf);
170  0 cachedDeserFactories.add(beandf);
171   
172  0 qName = new javax.xml.namespace.QName("simple.objects.vamsas",
173    "WsJobId");
174  0 cachedSerQNames.add(qName);
175  0 cls = vamsas.objects.simple.WsJobId.class;
176  0 cachedSerClasses.add(cls);
177  0 cachedSerFactories.add(beansf);
178  0 cachedDeserFactories.add(beandf);
179   
180  0 qName = new javax.xml.namespace.QName("http://simple.objects.vamsas",
181    "Object");
182  0 cachedSerQNames.add(qName);
183  0 cls = vamsas.objects.simple.Object.class;
184  0 cachedSerClasses.add(cls);
185  0 cachedSerFactories.add(beansf);
186  0 cachedDeserFactories.add(beandf);
187   
188  0 qName = new javax.xml.namespace.QName("vamsas", "ArrayOf_xsd_string");
189  0 cachedSerQNames.add(qName);
190  0 cls = java.lang.String[].class;
191  0 cachedSerClasses.add(cls);
192  0 cachedSerFactories.add(arraysf);
193  0 cachedDeserFactories.add(arraydf);
194   
195  0 qName = new javax.xml.namespace.QName("simple.objects.vamsas",
196    "Alignment");
197  0 cachedSerQNames.add(qName);
198  0 cls = vamsas.objects.simple.Alignment.class;
199  0 cachedSerClasses.add(cls);
200  0 cachedSerFactories.add(beansf);
201  0 cachedDeserFactories.add(beandf);
202   
203  0 qName = new javax.xml.namespace.QName("simple.objects.vamsas",
204    "Sequence");
205  0 cachedSerQNames.add(qName);
206  0 cls = vamsas.objects.simple.Sequence.class;
207  0 cachedSerClasses.add(cls);
208  0 cachedSerFactories.add(beansf);
209  0 cachedDeserFactories.add(beandf);
210   
211  0 qName = new javax.xml.namespace.QName("vamsas",
212    "ArrayOf_tns1_Sequence");
213  0 cachedSerQNames.add(qName);
214  0 cls = vamsas.objects.simple.Sequence[].class;
215  0 cachedSerClasses.add(cls);
216  0 cachedSerFactories.add(arraysf);
217  0 cachedDeserFactories.add(arraydf);
218   
219  0 qName = new javax.xml.namespace.QName("simple.objects.vamsas",
220    "SeqSearchResult");
221  0 cachedSerQNames.add(qName);
222  0 cls = vamsas.objects.simple.SeqSearchResult.class;
223  0 cachedSerClasses.add(cls);
224  0 cachedSerFactories.add(beansf);
225  0 cachedDeserFactories.add(beandf);
226   
227  0 qName = new javax.xml.namespace.QName("simple.objects.vamsas",
228    "SequenceSet");
229  0 cachedSerQNames.add(qName);
230  0 cls = vamsas.objects.simple.SequenceSet.class;
231  0 cachedSerClasses.add(cls);
232  0 cachedSerFactories.add(beansf);
233  0 cachedDeserFactories.add(beandf);
234   
235    }
236   
 
237  0 toggle protected org.apache.axis.client.Call createCall()
238    throws java.rmi.RemoteException
239    {
240  0 try
241    {
242  0 org.apache.axis.client.Call _call = (org.apache.axis.client.Call) super.service
243    .createCall();
244  0 if (super.maintainSessionSet)
245    {
246  0 _call.setMaintainSession(super.maintainSession);
247    }
248  0 if (super.cachedUsername != null)
249    {
250  0 _call.setUsername(super.cachedUsername);
251    }
252  0 if (super.cachedPassword != null)
253    {
254  0 _call.setPassword(super.cachedPassword);
255    }
256  0 if (super.cachedEndpoint != null)
257    {
258  0 _call.setTargetEndpointAddress(super.cachedEndpoint);
259    }
260  0 if (super.cachedTimeout != null)
261    {
262  0 _call.setTimeout(super.cachedTimeout);
263    }
264  0 if (super.cachedPortName != null)
265    {
266  0 _call.setPortName(super.cachedPortName);
267    }
268  0 java.util.Enumeration keys = super.cachedProperties.keys();
269  0 while (keys.hasMoreElements())
270    {
271  0 java.lang.String key = (java.lang.String) keys.nextElement();
272  0 _call.setProperty(key, super.cachedProperties.get(key));
273    }
274    // All the type mapping information is registered
275    // when the first call is made.
276    // The type mapping information is actually registered in
277    // the TypeMappingRegistry of the service, which
278    // is the reason why registration is only needed for the first call.
279  0 synchronized (this)
280    {
281  0 if (firstCall())
282    {
283    // must set encoding style before registering serializers
284  0 _call.setSOAPVersion(
285    org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
286  0 _call.setEncodingStyle(org.apache.axis.Constants.URI_SOAP11_ENC);
287  0 for (int i = 0; i < cachedSerFactories.size(); ++i)
288    {
289  0 java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);
290  0 javax.xml.namespace.QName qName = (javax.xml.namespace.QName) cachedSerQNames
291    .get(i);
292  0 java.lang.Class sf = (java.lang.Class) cachedSerFactories
293    .get(i);
294  0 java.lang.Class df = (java.lang.Class) cachedDeserFactories
295    .get(i);
296  0 _call.registerTypeMapping(cls, qName, sf, df, false);
297    }
298    }
299    }
300  0 return _call;
301    } catch (java.lang.Throwable _t)
302    {
303  0 throw new org.apache.axis.AxisFault(
304    "Failure trying to get the Call object", _t);
305    }
306    }
307   
 
308  0 toggle public java.lang.String getDatabase() throws java.rmi.RemoteException
309    {
310  0 if (super.cachedEndpoint == null)
311    {
312  0 throw new org.apache.axis.NoEndPointException();
313    }
314  0 org.apache.axis.client.Call _call = createCall();
315  0 _call.setOperation(_operations[0]);
316  0 _call.setUseSOAPAction(true);
317  0 _call.setSOAPActionURI("");
318  0 _call.setSOAPVersion(
319    org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
320  0 _call.setOperationName(
321    new javax.xml.namespace.QName("vamsas", "getDatabase"));
322   
323  0 setRequestHeaders(_call);
324  0 setAttachments(_call);
325  0 java.lang.Object _resp = _call.invoke(new java.lang.Object[] {});
326   
327  0 if (_resp instanceof java.rmi.RemoteException)
328    {
329  0 throw (java.rmi.RemoteException) _resp;
330    }
331    else
332    {
333  0 extractAttachments(_call);
334  0 try
335    {
336  0 return (java.lang.String) _resp;
337    } catch (java.lang.Exception _exception)
338    {
339  0 return (java.lang.String) org.apache.axis.utils.JavaUtils
340    .convert(_resp, java.lang.String.class);
341    }
342    }
343    }
344   
 
345  0 toggle public vamsas.objects.simple.SeqSearchResult getResult(
346    java.lang.String job_id) throws java.rmi.RemoteException
347    {
348  0 if (super.cachedEndpoint == null)
349    {
350  0 throw new org.apache.axis.NoEndPointException();
351    }
352  0 org.apache.axis.client.Call _call = createCall();
353  0 _call.setOperation(_operations[1]);
354  0 _call.setUseSOAPAction(true);
355  0 _call.setSOAPActionURI("");
356  0 _call.setSOAPVersion(
357    org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
358  0 _call.setOperationName(
359    new javax.xml.namespace.QName("vamsas", "getResult"));
360   
361  0 setRequestHeaders(_call);
362  0 setAttachments(_call);
363  0 java.lang.Object _resp = _call
364    .invoke(new java.lang.Object[]
365    { job_id });
366   
367  0 if (_resp instanceof java.rmi.RemoteException)
368    {
369  0 throw (java.rmi.RemoteException) _resp;
370    }
371    else
372    {
373  0 extractAttachments(_call);
374  0 try
375    {
376  0 return (vamsas.objects.simple.SeqSearchResult) _resp;
377    } catch (java.lang.Exception _exception)
378    {
379  0 return (vamsas.objects.simple.SeqSearchResult) org.apache.axis.utils.JavaUtils
380    .convert(_resp,
381    vamsas.objects.simple.SeqSearchResult.class);
382    }
383    }
384    }
385   
 
386  0 toggle public vamsas.objects.simple.WsJobId psearch(
387    vamsas.objects.simple.Alignment al, java.lang.String database)
388    throws java.rmi.RemoteException
389    {
390  0 if (super.cachedEndpoint == null)
391    {
392  0 throw new org.apache.axis.NoEndPointException();
393    }
394  0 org.apache.axis.client.Call _call = createCall();
395  0 _call.setOperation(_operations[2]);
396  0 _call.setUseSOAPAction(true);
397  0 _call.setSOAPActionURI("");
398  0 _call.setSOAPVersion(
399    org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
400  0 _call.setOperationName(
401    new javax.xml.namespace.QName("vamsas", "psearch"));
402   
403  0 setRequestHeaders(_call);
404  0 setAttachments(_call);
405  0 java.lang.Object _resp = _call
406    .invoke(new java.lang.Object[]
407    { al, database });
408   
409  0 if (_resp instanceof java.rmi.RemoteException)
410    {
411  0 throw (java.rmi.RemoteException) _resp;
412    }
413    else
414    {
415  0 extractAttachments(_call);
416  0 try
417    {
418  0 return (vamsas.objects.simple.WsJobId) _resp;
419    } catch (java.lang.Exception _exception)
420    {
421  0 return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils
422    .convert(_resp, vamsas.objects.simple.WsJobId.class);
423    }
424    }
425    }
426   
 
427  0 toggle public vamsas.objects.simple.WsJobId search(
428    vamsas.objects.simple.Sequence s, java.lang.String database)
429    throws java.rmi.RemoteException
430    {
431  0 if (super.cachedEndpoint == null)
432    {
433  0 throw new org.apache.axis.NoEndPointException();
434    }
435  0 org.apache.axis.client.Call _call = createCall();
436  0 _call.setOperation(_operations[3]);
437  0 _call.setUseSOAPAction(true);
438  0 _call.setSOAPActionURI("");
439  0 _call.setSOAPVersion(
440    org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
441  0 _call.setOperationName(
442    new javax.xml.namespace.QName("vamsas", "search"));
443   
444  0 setRequestHeaders(_call);
445  0 setAttachments(_call);
446  0 java.lang.Object _resp = _call
447    .invoke(new java.lang.Object[]
448    { s, database });
449   
450  0 if (_resp instanceof java.rmi.RemoteException)
451    {
452  0 throw (java.rmi.RemoteException) _resp;
453    }
454    else
455    {
456  0 extractAttachments(_call);
457  0 try
458    {
459  0 return (vamsas.objects.simple.WsJobId) _resp;
460    } catch (java.lang.Exception _exception)
461    {
462  0 return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils
463    .convert(_resp, vamsas.objects.simple.WsJobId.class);
464    }
465    }
466    }
467   
 
468  0 toggle public vamsas.objects.simple.WsJobId cancel(java.lang.String jobId)
469    throws java.rmi.RemoteException
470    {
471  0 if (super.cachedEndpoint == null)
472    {
473  0 throw new org.apache.axis.NoEndPointException();
474    }
475  0 org.apache.axis.client.Call _call = createCall();
476  0 _call.setOperation(_operations[4]);
477  0 _call.setUseSOAPAction(true);
478  0 _call.setSOAPActionURI("");
479  0 _call.setSOAPVersion(
480    org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
481  0 _call.setOperationName(
482    new javax.xml.namespace.QName("vamsas", "cancel"));
483   
484  0 setRequestHeaders(_call);
485  0 setAttachments(_call);
486  0 java.lang.Object _resp = _call.invoke(new java.lang.Object[] { jobId });
487   
488  0 if (_resp instanceof java.rmi.RemoteException)
489    {
490  0 throw (java.rmi.RemoteException) _resp;
491    }
492    else
493    {
494  0 extractAttachments(_call);
495  0 try
496    {
497  0 return (vamsas.objects.simple.WsJobId) _resp;
498    } catch (java.lang.Exception _exception)
499    {
500  0 return (vamsas.objects.simple.WsJobId) org.apache.axis.utils.JavaUtils
501    .convert(_resp, vamsas.objects.simple.WsJobId.class);
502    }
503    }
504    }
505   
506    }
  • Report generated by OpenClover v 4.4.1 on Wed Jun 18 2025 15:16:08 BST using coverage data from Wed Jun 18 2025 15:15:57 BST.
  • OpenClover is free and open-source software.