Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
ViewStyleI	25	0	0	-1.0 -	Show methods

Class ViewStyleI

Class ViewStyleI	Line # 25	Total Statements 0	Complexity 0	TOTAL Coverage -1.0 -

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.api;
22
23		import java.awt.Color;
24
		- Uncovered Elements: 0 (0) Complexity: 0 Complexity Density: -
25		public interface ViewStyleI
26		{
27		void setShowComplementFeatures(boolean b);
28
29		boolean isShowComplementFeatures();
30
31		void setShowComplementFeaturesOnTop(boolean b);
32
33		boolean isShowComplementFeaturesOnTop();
34
35		void setColourAppliesToAllGroups(boolean b);
36
37		boolean getColourAppliesToAllGroups();
38
39		boolean getAbovePIDThreshold();
40
41		void setIncrement(int inc);
42
43		int getIncrement();
44
45		boolean getConservationSelected();
46
47		void setConservationSelected(boolean b);
48
49		void setShowHiddenMarkers(boolean show);
50
51		boolean getShowHiddenMarkers();
52
53		void setScaleRightWrapped(boolean b);
54
55		void setScaleLeftWrapped(boolean b);
56
57		void setScaleAboveWrapped(boolean b);
58
59		boolean getScaleLeftWrapped();
60
61		boolean getScaleAboveWrapped();
62
63		boolean getScaleRightWrapped();
64
65		void setAbovePIDThreshold(boolean b);
66
67		void setThreshold(int thresh);
68
69		int getThreshold();
70
71		boolean getShowJVSuffix();
72
73		void setShowJVSuffix(boolean b);
74
75		void setWrapAlignment(boolean state);
76
77		void setShowText(boolean state);
78
79		void setRenderGaps(boolean state);
80
81		boolean getColourText();
82
83		void setColourText(boolean state);
84
85		void setShowBoxes(boolean state);
86
87		boolean getWrapAlignment();
88
89		boolean getShowText();
90
91		int getWrappedWidth();
92
93		void setWrappedWidth(int w);
94
95		int getCharHeight();
96
97		void setCharHeight(int h);
98
99		int getCharWidth();
100
101		void setCharWidth(int w);
102
103		boolean getShowBoxes();
104
105		boolean getShowUnconserved();
106
107		void setShowUnconserved(boolean showunconserved);
108
109		/**
110		* @return true if a reference sequence is set and should be displayed
111		*/
112		boolean isDisplayReferenceSeq();
113
114		/**
115		* @return set the flag for displaying reference sequences when they are
116		* available
117		*/
118		void setDisplayReferenceSeq(boolean displayReferenceSeq);
119
120		/**
121		* @return true if colourschemes should render according to reference sequence
122		* rather than consensus if available
123		*/
124		boolean isColourByReferenceSeq();
125
126		void setSeqNameItalics(boolean default1);
127
128		void setShowSequenceFeatures(boolean b);
129
130		boolean isShowSequenceFeatures();
131
132		boolean isRightAlignIds();
133
134		void setRightAlignIds(boolean rightAlignIds);
135
136		/**
137		* Returns true if annotation panel should be shown below alignment
138		*
139		* @return
140		*/
141		boolean isShowAnnotation();
142
143		/**
144		* Set flag for whether annotation panel should be shown below alignment
145		*
146		* @param b
147		*/
148		void setShowAnnotation(boolean b);
149
150		void setShowSequenceFeaturesHeight(boolean selected);
151
152		/**
153		* @return true set flag for deciding if colourschemes should render according
154		* to reference sequence rather than consensus if available
155		*/
156		void setColourByReferenceSeq(boolean colourByReferenceSeq);
157
158		Color getTextColour();
159
160		Color getTextColour2();
161
162		int getThresholdTextColour();
163
164		boolean isConservationColourSelected();
165
166		boolean isRenderGaps();
167
168		boolean isShowColourText();
169
170		boolean isShowSequenceFeaturesHeight();
171
172		void setConservationColourSelected(boolean conservationColourSelected);
173
174		void setShowColourText(boolean showColourText);
175
176		void setTextColour(Color textColour);
177
178		void setThresholdTextColour(int thresholdTextColour);
179
180		void setTextColour2(Color textColour2);
181
182		boolean isSeqNameItalics();
183
184		void setUpperCasebold(boolean upperCasebold);
185
186		boolean isUpperCasebold();
187
188		boolean sameStyle(ViewStyleI them);
189
190		void setFontName(String name);
191
192		void setFontStyle(int style);
193
194		void setFontSize(int size);
195
196		int getFontStyle();
197
198		String getFontName();
199
200		int getFontSize();
201
202		/**
203		* @return width of Sequence and Annotation ID margin. If less than zero, then
204		* width will be autocalculated
205		*/
206		int getIdWidth();
207
208		/**
209		* Set width if
210		*
211		* @param i
212		*/
213
214		void setIdWidth(int i);
215
216		/**
217		* centre columnar annotation labels in displayed alignment annotation
218		*/
219		boolean isCentreColumnLabels();
220
221		/**
222		* centre columnar annotation labels in displayed alignment annotation
223		*/
224		void setCentreColumnLabels(boolean centreColumnLabels);
225
226		/**
227		* enable or disable the display of Database Cross References in the sequence
228		* ID tooltip
229		*/
230		void setShowDBRefs(boolean showdbrefs);
231
232		/**
233		*
234		* @return true if Database References are to be displayed on tooltips.
235		*/
236		boolean isShowDBRefs();
237
238		/**
239		*
240		* @return true if Non-positional features are to be displayed on tooltips.
241		*/
242		boolean isShowNPFeats();
243
244		/**
245		* enable or disable the display of Non-Positional sequence features in the
246		* sequence ID tooltip
247		*
248		* @param show
249		*/
250		void setShowNPFeats(boolean shownpfeats);
251
252		/**
253		* Get flag to scale protein residues 3 times the width of cDNA bases (only
254		* applicable in SplitFrame views)
255		*
256		* @return
257		*/
258		boolean isScaleProteinAsCdna();
259
260		/**
261		* Set flag to scale protein residues 3 times the width of cDNA bases (only
262		* applicable in SplitFrame views)
263		*
264		* @return
265		*/
266		void setScaleProteinAsCdna(boolean b);
267
268		/**
269		* Answers true if split screen protein and cDNA use the same font
270		*
271		* @return
272		*/
273		boolean isProteinFontAsCdna();
274
275		/**
276		* Set the flag for whether split screen protein and cDNA use the same font
277		*
278		* @return
279		*/
280		void setProteinFontAsCdna(boolean b);
281		}