Clover icon

Coverage Report

  1. Project Clover database Wed Nov 13 2024 16:21:17 GMT
  2. Package jalview.xml.binding.jalview

File JalviewUserColours.java

 

Coverage histogram

../../../../img/srcFileCovDistChart9.png
12% of files have more coverage

Code metrics

8
39
31
3
599
204
35
0.9
1.26
10.33
1.13

Classes

Class Line # Actions
JalviewUserColours 74 10 8
0.770%
JalviewUserColours.Colour 221 25 23
0.9696%
JalviewUserColours.Filter 542 4 4
1.0100%
 

Contributing tests

This file is covered by 1 test. .

Source view

1    //
2    // This file was generated by the Eclipse Implementation of JAXB, v2.3.3
3    // See https://eclipse-ee4j.github.io/jaxb-ri
4    // Any modifications to this file will be lost upon recompilation of the source schema.
5    // Generated on: 2023.11.01 at 07:03:09 PM GMT
6    //
7   
8    package jalview.xml.binding.jalview;
9   
10    import java.util.ArrayList;
11    import java.util.List;
12    import javax.xml.bind.annotation.XmlAccessType;
13    import javax.xml.bind.annotation.XmlAccessorType;
14    import javax.xml.bind.annotation.XmlAttribute;
15    import javax.xml.bind.annotation.XmlElement;
16    import javax.xml.bind.annotation.XmlType;
17   
18    /**
19    * <p>Java class for JalviewUserColours complex type.
20    *
21    * <p>The following schema fragment specifies the expected content
22    * contained within this class.
23    *
24    * <pre> <complexType name="JalviewUserColours">
25    * <complexContent> <restriction
26    * base="{http://www.w3.org/2001/XMLSchema}anyType">
27    * <sequence> <element name="Version"
28    * type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
29    * <element name="colour" maxOccurs="unbounded" minOccurs="0">
30    * <complexType> <complexContent>
31    * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
32    * <sequence> <element name="attributeName"
33    * type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="2"
34    * minOccurs="0"/> </sequence> <attribute
35    * name="Name" type="{http://www.w3.org/2001/XMLSchema}string" />
36    * <attribute name="RGB" use="required"
37    * type="{http://www.w3.org/2001/XMLSchema}string" /> <attribute
38    * name="minRGB" type="{http://www.w3.org/2001/XMLSchema}string" />
39    * <attribute name="noValueColour"
40    * type="{www.jalview.org/colours}NoValueColour" default="Min" />
41    * <attribute name="threshType"
42    * type="{www.jalview.org/colours}ThresholdType" /> <attribute
43    * name="threshold" type="{http://www.w3.org/2001/XMLSchema}float" />
44    * <attribute name="max" type="{http://www.w3.org/2001/XMLSchema}float"
45    * /> <attribute name="min"
46    * type="{http://www.w3.org/2001/XMLSchema}float" /> <attribute
47    * name="colourByLabel" type="{http://www.w3.org/2001/XMLSchema}boolean"
48    * /> <attribute name="autoScale"
49    * type="{http://www.w3.org/2001/XMLSchema}boolean" />
50    * </restriction> </complexContent>
51    * </complexType> </element> <element
52    * name="filter" maxOccurs="unbounded" minOccurs="0">
53    * <complexType> <complexContent>
54    * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
55    * <sequence> <element name="matcherSet"
56    * type="{www.jalview.org/colours}FeatureMatcherSet"/>
57    * </sequence> <attribute name="featureType" use="required"
58    * type="{http://www.w3.org/2001/XMLSchema}string" />
59    * </restriction> </complexContent>
60    * </complexType> </element>
61    * </sequence> <attribute name="schemeName"
62    * type="{http://www.w3.org/2001/XMLSchema}string" />
63    * </restriction> </complexContent>
64    * </complexType> </pre>
65    *
66    *
67    */
68    @XmlAccessorType(XmlAccessType.FIELD)
69    @XmlType(
70    name = "JalviewUserColours",
71    namespace = "www.jalview.org/colours",
72    propOrder =
73    { "version", "colour", "filter" })
 
74    public class JalviewUserColours
75    {
76   
77    @XmlElement(name = "Version", namespace = "")
78    protected String version;
79   
80    @XmlElement(namespace = "")
81    protected List<JalviewUserColours.Colour> colour;
82   
83    @XmlElement(namespace = "")
84    protected List<JalviewUserColours.Filter> filter;
85   
86    @XmlAttribute(name = "schemeName")
87    protected String schemeName;
88   
89    /**
90    * Gets the value of the version property.
91    *
92    * @return possible object is {@link String }
93    *
94    */
 
95  0 toggle public String getVersion()
96    {
97  0 return version;
98    }
99   
100    /**
101    * Sets the value of the version property.
102    *
103    * @param value
104    * allowed object is {@link String }
105    *
106    */
 
107  0 toggle public void setVersion(String value)
108    {
109  0 this.version = value;
110    }
111   
112    /**
113    * Gets the value of the colour property.
114    *
115    * &lt;p&gt; This accessor method returns a reference to the live list, not a
116    * snapshot. Therefore any modification you make to the returned list will be
117    * present inside the JAXB object. This is why there is not a
118    * &lt;CODE&gt;set&lt;/CODE&gt; method for the colour property.
119    *
120    * &lt;p&gt; For example, to add a new item, do as follows: &lt;pre&gt;
121    * getColour().add(newItem); &lt;/pre&gt;
122    *
123    *
124    * &lt;p&gt; Objects of the following type(s) are allowed in the list
125    * {@link JalviewUserColours.Colour }
126    *
127    *
128    */
 
129  16 toggle public List<JalviewUserColours.Colour> getColour()
130    {
131  16 if (colour == null)
132    {
133  1 colour = new ArrayList<JalviewUserColours.Colour>();
134    }
135  16 return this.colour;
136    }
137   
138    /**
139    * Gets the value of the filter property.
140    *
141    * &lt;p&gt; This accessor method returns a reference to the live list, not a
142    * snapshot. Therefore any modification you make to the returned list will be
143    * present inside the JAXB object. This is why there is not a
144    * &lt;CODE&gt;set&lt;/CODE&gt; method for the filter property.
145    *
146    * &lt;p&gt; For example, to add a new item, do as follows: &lt;pre&gt;
147    * getFilter().add(newItem); &lt;/pre&gt;
148    *
149    *
150    * &lt;p&gt; Objects of the following type(s) are allowed in the list
151    * {@link JalviewUserColours.Filter }
152    *
153    *
154    */
 
155  10 toggle public List<JalviewUserColours.Filter> getFilter()
156    {
157  10 if (filter == null)
158    {
159  1 filter = new ArrayList<JalviewUserColours.Filter>();
160    }
161  10 return this.filter;
162    }
163   
164    /**
165    * Gets the value of the schemeName property.
166    *
167    * @return possible object is {@link String }
168    *
169    */
 
170  0 toggle public String getSchemeName()
171    {
172  0 return schemeName;
173    }
174   
175    /**
176    * Sets the value of the schemeName property.
177    *
178    * @param value
179    * allowed object is {@link String }
180    *
181    */
 
182  1 toggle public void setSchemeName(String value)
183    {
184  1 this.schemeName = value;
185    }
186   
187    /**
188    * &lt;p&gt;Java class for anonymous complex type.
189    *
190    * &lt;p&gt;The following schema fragment specifies the expected content
191    * contained within this class.
192    *
193    * &lt;pre&gt; &amp;lt;complexType&amp;gt; &amp;lt;complexContent&amp;gt;
194    * &amp;lt;restriction
195    * base="{http://www.w3.org/2001/XMLSchema}anyType"&amp;gt;
196    * &amp;lt;sequence&amp;gt; &amp;lt;element name="attributeName"
197    * type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="2"
198    * minOccurs="0"/&amp;gt; &amp;lt;/sequence&amp;gt; &amp;lt;attribute
199    * name="Name" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
200    * &amp;lt;attribute name="RGB" use="required"
201    * type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt; &amp;lt;attribute
202    * name="minRGB" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
203    * &amp;lt;attribute name="noValueColour"
204    * type="{www.jalview.org/colours}NoValueColour" default="Min" /&amp;gt;
205    * &amp;lt;attribute name="threshType"
206    * type="{www.jalview.org/colours}ThresholdType" /&amp;gt; &amp;lt;attribute
207    * name="threshold" type="{http://www.w3.org/2001/XMLSchema}float" /&amp;gt;
208    * &amp;lt;attribute name="max" type="{http://www.w3.org/2001/XMLSchema}float"
209    * /&amp;gt; &amp;lt;attribute name="min"
210    * type="{http://www.w3.org/2001/XMLSchema}float" /&amp;gt; &amp;lt;attribute
211    * name="colourByLabel" type="{http://www.w3.org/2001/XMLSchema}boolean"
212    * /&amp;gt; &amp;lt;attribute name="autoScale"
213    * type="{http://www.w3.org/2001/XMLSchema}boolean" /&amp;gt;
214    * &amp;lt;/restriction&amp;gt; &amp;lt;/complexContent&amp;gt;
215    * &amp;lt;/complexType&amp;gt; &lt;/pre&gt;
216    *
217    *
218    */
219    @XmlAccessorType(XmlAccessType.FIELD)
220    @XmlType(name = "", propOrder = { "attributeName" })
 
221    public static class Colour
222    {
223   
224    @XmlElement(namespace = "")
225    protected List<String> attributeName;
226   
227    @XmlAttribute(name = "Name")
228    protected String name;
229   
230    @XmlAttribute(name = "RGB", required = true)
231    protected String rgb;
232   
233    @XmlAttribute(name = "minRGB")
234    protected String minRGB;
235   
236    @XmlAttribute(name = "noValueColour")
237    protected NoValueColour noValueColour;
238   
239    @XmlAttribute(name = "threshType")
240    protected ThresholdType threshType;
241   
242    @XmlAttribute(name = "threshold")
243    protected Float threshold;
244   
245    @XmlAttribute(name = "max")
246    protected Float max;
247   
248    @XmlAttribute(name = "min")
249    protected Float min;
250   
251    @XmlAttribute(name = "colourByLabel")
252    protected Boolean colourByLabel;
253   
254    @XmlAttribute(name = "autoScale")
255    protected Boolean autoScale;
256   
257    /**
258    * Gets the value of the attributeName property.
259    *
260    * &lt;p&gt; This accessor method returns a reference to the live list, not
261    * a snapshot. Therefore any modification you make to the returned list will
262    * be present inside the JAXB object. This is why there is not a
263    * &lt;CODE&gt;set&lt;/CODE&gt; method for the attributeName property.
264    *
265    * &lt;p&gt; For example, to add a new item, do as follows: &lt;pre&gt;
266    * getAttributeName().add(newItem); &lt;/pre&gt;
267    *
268    *
269    * &lt;p&gt; Objects of the following type(s) are allowed in the list
270    * {@link String }
271    *
272    *
273    */
 
274  7 toggle public List<String> getAttributeName()
275    {
276  7 if (attributeName == null)
277    {
278  4 attributeName = new ArrayList<String>();
279    }
280  7 return this.attributeName;
281    }
282   
283    /**
284    * Gets the value of the name property.
285    *
286    * @return possible object is {@link String }
287    *
288    */
 
289  10 toggle public String getName()
290    {
291  10 return name;
292    }
293   
294    /**
295    * Sets the value of the name property.
296    *
297    * @param value
298    * allowed object is {@link String }
299    *
300    */
 
301  5 toggle public void setName(String value)
302    {
303  5 this.name = value;
304    }
305   
306    /**
307    * Gets the value of the rgb property.
308    *
309    * @return possible object is {@link String }
310    *
311    */
 
312  5 toggle public String getRGB()
313    {
314  5 return rgb;
315    }
316   
317    /**
318    * Sets the value of the rgb property.
319    *
320    * @param value
321    * allowed object is {@link String }
322    *
323    */
 
324  5 toggle public void setRGB(String value)
325    {
326  5 this.rgb = value;
327    }
328   
329    /**
330    * Gets the value of the minRGB property.
331    *
332    * @return possible object is {@link String }
333    *
334    */
 
335  4 toggle public String getMinRGB()
336    {
337  4 return minRGB;
338    }
339   
340    /**
341    * Sets the value of the minRGB property.
342    *
343    * @param value
344    * allowed object is {@link String }
345    *
346    */
 
347  4 toggle public void setMinRGB(String value)
348    {
349  4 this.minRGB = value;
350    }
351   
352    /**
353    * Gets the value of the noValueColour property.
354    *
355    * @return possible object is {@link NoValueColour }
356    *
357    */
 
358  4 toggle public NoValueColour getNoValueColour()
359    {
360  4 if (noValueColour == null)
361    {
362  0 return NoValueColour.MIN;
363    }
364    else
365    {
366  4 return noValueColour;
367    }
368    }
369   
370    /**
371    * Sets the value of the noValueColour property.
372    *
373    * @param value
374    * allowed object is {@link NoValueColour }
375    *
376    */
 
377  4 toggle public void setNoValueColour(NoValueColour value)
378    {
379  4 this.noValueColour = value;
380    }
381   
382    /**
383    * Gets the value of the threshType property.
384    *
385    * @return possible object is {@link ThresholdType }
386    *
387    */
 
388  4 toggle public ThresholdType getThreshType()
389    {
390  4 return threshType;
391    }
392   
393    /**
394    * Sets the value of the threshType property.
395    *
396    * @param value
397    * allowed object is {@link ThresholdType }
398    *
399    */
 
400  4 toggle public void setThreshType(ThresholdType value)
401    {
402  4 this.threshType = value;
403    }
404   
405    /**
406    * Gets the value of the threshold property.
407    *
408    * @return possible object is {@link Float }
409    *
410    */
 
411  8 toggle public Float getThreshold()
412    {
413  8 return threshold;
414    }
415   
416    /**
417    * Sets the value of the threshold property.
418    *
419    * @param value
420    * allowed object is {@link Float }
421    *
422    */
 
423  4 toggle public void setThreshold(Float value)
424    {
425  4 this.threshold = value;
426    }
427   
428    /**
429    * Gets the value of the max property.
430    *
431    * @return possible object is {@link Float }
432    *
433    */
 
434  9 toggle public Float getMax()
435    {
436  9 return max;
437    }
438   
439    /**
440    * Sets the value of the max property.
441    *
442    * @param value
443    * allowed object is {@link Float }
444    *
445    */
 
446  4 toggle public void setMax(Float value)
447    {
448  4 this.max = value;
449    }
450   
451    /**
452    * Gets the value of the min property.
453    *
454    * @return possible object is {@link Float }
455    *
456    */
 
457  4 toggle public Float getMin()
458    {
459  4 return min;
460    }
461   
462    /**
463    * Sets the value of the min property.
464    *
465    * @param value
466    * allowed object is {@link Float }
467    *
468    */
 
469  4 toggle public void setMin(Float value)
470    {
471  4 this.min = value;
472    }
473   
474    /**
475    * Gets the value of the colourByLabel property.
476    *
477    * @return possible object is {@link Boolean }
478    *
479    */
 
480  8 toggle public Boolean isColourByLabel()
481    {
482  8 return colourByLabel;
483    }
484   
485    /**
486    * Sets the value of the colourByLabel property.
487    *
488    * @param value
489    * allowed object is {@link Boolean }
490    *
491    */
 
492  4 toggle public void setColourByLabel(Boolean value)
493    {
494  4 this.colourByLabel = value;
495    }
496   
497    /**
498    * Gets the value of the autoScale property.
499    *
500    * @return possible object is {@link Boolean }
501    *
502    */
 
503  8 toggle public Boolean isAutoScale()
504    {
505  8 return autoScale;
506    }
507   
508    /**
509    * Sets the value of the autoScale property.
510    *
511    * @param value
512    * allowed object is {@link Boolean }
513    *
514    */
 
515  4 toggle public void setAutoScale(Boolean value)
516    {
517  4 this.autoScale = value;
518    }
519   
520    }
521   
522    /**
523    * &lt;p&gt;Java class for anonymous complex type.
524    *
525    * &lt;p&gt;The following schema fragment specifies the expected content
526    * contained within this class.
527    *
528    * &lt;pre&gt; &amp;lt;complexType&amp;gt; &amp;lt;complexContent&amp;gt;
529    * &amp;lt;restriction
530    * base="{http://www.w3.org/2001/XMLSchema}anyType"&amp;gt;
531    * &amp;lt;sequence&amp;gt; &amp;lt;element name="matcherSet"
532    * type="{www.jalview.org/colours}FeatureMatcherSet"/&amp;gt;
533    * &amp;lt;/sequence&amp;gt; &amp;lt;attribute name="featureType"
534    * use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
535    * &amp;lt;/restriction&amp;gt; &amp;lt;/complexContent&amp;gt;
536    * &amp;lt;/complexType&amp;gt; &lt;/pre&gt;
537    *
538    *
539    */
540    @XmlAccessorType(XmlAccessType.FIELD)
541    @XmlType(name = "", propOrder = { "matcherSet" })
 
542    public static class Filter
543    {
544   
545    @XmlElement(namespace = "", required = true)
546    protected FeatureMatcherSet matcherSet;
547   
548    @XmlAttribute(name = "featureType", required = true)
549    protected String featureType;
550   
551    /**
552    * Gets the value of the matcherSet property.
553    *
554    * @return possible object is {@link FeatureMatcherSet }
555    *
556    */
 
557  3 toggle public FeatureMatcherSet getMatcherSet()
558    {
559  3 return matcherSet;
560    }
561   
562    /**
563    * Sets the value of the matcherSet property.
564    *
565    * @param value
566    * allowed object is {@link FeatureMatcherSet }
567    *
568    */
 
569  3 toggle public void setMatcherSet(FeatureMatcherSet value)
570    {
571  3 this.matcherSet = value;
572    }
573   
574    /**
575    * Gets the value of the featureType property.
576    *
577    * @return possible object is {@link String }
578    *
579    */
 
580  3 toggle public String getFeatureType()
581    {
582  3 return featureType;
583    }
584   
585    /**
586    * Sets the value of the featureType property.
587    *
588    * @param value
589    * allowed object is {@link String }
590    *
591    */
 
592  3 toggle public void setFeatureType(String value)
593    {
594  3 this.featureType = value;
595    }
596   
597    }
598   
599    }