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  1. Project Clover database Wed Nov 13 2024 16:21:17 GMT
  2. Package jalview.datamodel

File SequenceDummyTest.java

 

Code metrics

2
15
2
1
72
40
3
0.2
7.5
2
1.5

Classes

Class Line # Actions
SequenceDummyTest 32 15 3
0.9473684494.7%
 

Contributing tests

This file is covered by 1 test. .

Source view

1    /*
2    * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3    * Copyright (C) $$Year-Rel$$ The Jalview Authors
4    *
5    * This file is part of Jalview.
6    *
7    * Jalview is free software: you can redistribute it and/or
8    * modify it under the terms of the GNU General Public License
9    * as published by the Free Software Foundation, either version 3
10    * of the License, or (at your option) any later version.
11    *
12    * Jalview is distributed in the hope that it will be useful, but
13    * WITHOUT ANY WARRANTY; without even the implied warranty
14    * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15    * PURPOSE. See the GNU General Public License for more details.
16    *
17    * You should have received a copy of the GNU General Public License
18    * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19    * The Jalview Authors are detailed in the 'AUTHORS' file.
20    */
21    package jalview.datamodel;
22   
23    import static org.testng.AssertJUnit.assertFalse;
24    import static org.testng.AssertJUnit.assertTrue;
25   
26    import jalview.gui.JvOptionPane;
27   
28    import org.testng.annotations.BeforeClass;
29    import org.testng.annotations.Test;
30   
31    @Test
 
32    public class SequenceDummyTest
33    {
34   
 
35  1 toggle @BeforeClass(alwaysRun = true)
36    public void setUpJvOptionPane()
37    {
38  1 JvOptionPane.setInteractiveMode(false);
39  1 JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
40    }
41   
42    /**
43    * test for become method
44    */
 
45  1 toggle @Test(groups = { "Functional" })
46    public void testBecome()
47    {
48  1 SequenceI seq = new Sequence("OrigSeq", "ASEQUENCE");
49  1 SequenceFeature ofeat = new SequenceFeature("NewFeat", "somedesc", 3,
50    12, 2.3f, "none");
51   
52  1 SequenceDummy dummySeq = new SequenceDummy("OrigSeq");
53  1 dummySeq.addSequenceFeature(ofeat);
54  1 dummySeq.become(seq);
55  1 assertFalse("Dummy sequence did not become a full sequence",
56    dummySeq.isDummy());
57  1 assertTrue("Sequence was not updated from template", seq
58    .getSequenceAsString().equals(dummySeq.getSequenceAsString()));
59  1 boolean found = false;
60  1 for (SequenceFeature sf : dummySeq.getSequenceFeatures())
61    {
62  1 if (sf == ofeat)
63    {
64  1 found = true;
65  1 break;
66    }
67    }
68  1 assertTrue("Didn't retain original sequence feature", found);
69   
70    // todo - should test all aspect of copy constructor
71    }
72    }