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package jalview.appletgui; |
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import jalview.datamodel.ColumnSelection; |
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import jalview.datamodel.HiddenColumns; |
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import jalview.datamodel.SequenceGroup; |
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import jalview.renderer.ScaleRenderer; |
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import jalview.renderer.ScaleRenderer.ScaleMark; |
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import jalview.util.MessageManager; |
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import jalview.viewmodel.ViewportListenerI; |
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import jalview.viewmodel.ViewportRanges; |
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import java.awt.Color; |
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import java.awt.FontMetrics; |
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import java.awt.Graphics; |
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import java.awt.MenuItem; |
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import java.awt.Panel; |
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import java.awt.PopupMenu; |
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import java.awt.event.ActionEvent; |
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import java.awt.event.ActionListener; |
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import java.awt.event.InputEvent; |
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import java.awt.event.MouseEvent; |
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import java.awt.event.MouseListener; |
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import java.awt.event.MouseMotionListener; |
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import java.beans.PropertyChangeEvent; |
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import java.util.Iterator; |
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import java.util.List; |
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|
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| 0% |
Uncovered Elements: 232 (232) |
Complexity: 53 |
Complexity Density: 0.35 |
|
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public class ScalePanel extends Panel |
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implements MouseMotionListener, MouseListener, ViewportListenerI |
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{ |
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protected int offy = 4; |
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public int width; |
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protected AlignViewport av; |
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|
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AlignmentPanel ap; |
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|
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boolean stretchingGroup = false; |
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int min; |
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int max; |
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|
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boolean mouseDragging = false; |
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|
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int[] reveal; |
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| 0% |
Uncovered Elements: 6 (6) |
Complexity: 1 |
Complexity Density: 0.17 |
|
70 |
0 |
public ScalePanel(AlignViewport av, AlignmentPanel ap)... |
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{ |
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0 |
setLayout(null); |
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this.av = av; |
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0 |
this.ap = ap; |
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|
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addMouseListener(this); |
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addMouseMotionListener(this); |
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|
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av.getRanges().addPropertyChangeListener(this); |
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} |
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| 0% |
Uncovered Elements: 14 (14) |
Complexity: 3 |
Complexity Density: 0.3 |
|
82 |
0 |
@Override... |
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public void mousePressed(MouseEvent evt) |
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{ |
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int x = (evt.getX() / av.getCharWidth()) + av.getRanges().getStartRes(); |
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final int res; |
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|
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if (av.hasHiddenColumns()) |
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{ |
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res = av.getAlignment().getHiddenColumns().visibleToAbsoluteColumn(x); |
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} |
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else |
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{ |
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res = x; |
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} |
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|
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min = res; |
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0 |
max = res; |
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if ((evt.getModifiersEx() |
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& InputEvent.BUTTON3_DOWN_MASK) == InputEvent.BUTTON3_DOWN_MASK) |
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{ |
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rightMouseButtonPressed(evt, res); |
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} |
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else |
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{ |
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leftMouseButtonPressed(evt, res); |
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} |
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} |
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|
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@param |
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@param |
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| 0% |
Uncovered Elements: 26 (26) |
Complexity: 6 |
Complexity Density: 0.33 |
|
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protected void leftMouseButtonPressed(MouseEvent evt, final int res)... |
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{ |
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if (!evt.isControlDown() && !evt.isShiftDown()) |
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{ |
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av.getColumnSelection().clear(); |
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} |
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av.getColumnSelection().addElement(res); |
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SequenceGroup sg = new SequenceGroup(); |
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for (int i = 0; i < av.getAlignment().getSequences().size(); i++) |
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{ |
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sg.addSequence(av.getAlignment().getSequenceAt(i), false); |
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} |
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|
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sg.setStartRes(res); |
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sg.setEndRes(res); |
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av.setSelectionGroup(sg); |
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|
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if (evt.isShiftDown()) |
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{ |
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int min = Math.min(av.getColumnSelection().getMin(), res); |
137 |
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int max = Math.max(av.getColumnSelection().getMax(), res); |
138 |
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for (int i = min; i < max; i++) |
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{ |
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av.getColumnSelection().addElement(i); |
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} |
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sg.setStartRes(min); |
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sg.setEndRes(max); |
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} |
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ap.paintAlignment(false, false); |
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0 |
av.sendSelection(); |
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} |
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|
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@param |
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@param |
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| 0% |
Uncovered Elements: 23 (23) |
Complexity: 4 |
Complexity Density: 0.24 |
|
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0 |
protected void rightMouseButtonPressed(MouseEvent evt, final int res)... |
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{ |
159 |
0 |
PopupMenu pop = new PopupMenu(); |
160 |
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if (reveal != null) |
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{ |
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MenuItem item = new MenuItem( |
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MessageManager.getString("label.reveal")); |
164 |
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item.addActionListener(new ActionListener() |
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{ |
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| 0% |
Uncovered Elements: 4 (4) |
Complexity: 1 |
Complexity Density: 0.25 |
|
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0 |
@Override... |
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public void actionPerformed(ActionEvent e) |
168 |
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{ |
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av.showColumn(reveal[0]); |
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reveal = null; |
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0 |
ap.paintAlignment(true, true); |
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av.sendSelection(); |
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} |
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}); |
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pop.add(item); |
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|
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if (av.getAlignment().getHiddenColumns() |
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.hasMultiHiddenColumnRegions()) |
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{ |
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item = new MenuItem(MessageManager.getString("action.reveal_all")); |
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item.addActionListener(new ActionListener() |
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{ |
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| 0% |
Uncovered Elements: 4 (4) |
Complexity: 1 |
Complexity Density: 0.25 |
|
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0 |
@Override... |
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public void actionPerformed(ActionEvent e) |
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{ |
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av.showAllHiddenColumns(); |
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reveal = null; |
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ap.paintAlignment(true, true); |
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av.sendSelection(); |
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} |
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}); |
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pop.add(item); |
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} |
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this.add(pop); |
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pop.show(this, evt.getX(), evt.getY()); |
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} |
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else if (av.getColumnSelection().contains(res)) |
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{ |
199 |
0 |
MenuItem item = new MenuItem( |
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MessageManager.getString("label.hide_columns")); |
201 |
0 |
item.addActionListener(new ActionListener() |
202 |
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{ |
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| 0% |
Uncovered Elements: 7 (7) |
Complexity: 3 |
Complexity Density: 0.6 |
|
203 |
0 |
@Override... |
204 |
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public void actionPerformed(ActionEvent e) |
205 |
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{ |
206 |
0 |
av.hideColumns(res, res); |
207 |
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if (av.getSelectionGroup() != null && av.getSelectionGroup() |
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.getSize() == av.getAlignment().getHeight()) |
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{ |
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av.setSelectionGroup(null); |
211 |
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} |
212 |
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|
213 |
0 |
ap.paintAlignment(true, true); |
214 |
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av.sendSelection(); |
215 |
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} |
216 |
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}); |
217 |
0 |
pop.add(item); |
218 |
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this.add(pop); |
219 |
0 |
pop.show(this, evt.getX(), evt.getY()); |
220 |
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} |
221 |
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} |
222 |
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|
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| 0% |
Uncovered Elements: 27 (27) |
Complexity: 6 |
Complexity Density: 0.35 |
|
223 |
0 |
@Override... |
224 |
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public void mouseReleased(MouseEvent evt) |
225 |
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{ |
226 |
0 |
mouseDragging = false; |
227 |
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|
228 |
0 |
int res = (evt.getX() / av.getCharWidth()) |
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+ av.getRanges().getStartRes(); |
230 |
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|
231 |
0 |
if (res > av.getAlignment().getWidth()) |
232 |
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{ |
233 |
0 |
res = av.getAlignment().getWidth() - 1; |
234 |
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} |
235 |
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|
236 |
0 |
if (av.hasHiddenColumns()) |
237 |
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{ |
238 |
0 |
res = av.getAlignment().getHiddenColumns() |
239 |
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.visibleToAbsoluteColumn(res); |
240 |
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} |
241 |
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|
242 |
0 |
if (!stretchingGroup) |
243 |
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{ |
244 |
0 |
ap.paintAlignment(false, false); |
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|
246 |
0 |
return; |
247 |
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} |
248 |
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|
249 |
0 |
SequenceGroup sg = av.getSelectionGroup(); |
250 |
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|
251 |
0 |
if (res > sg.getStartRes()) |
252 |
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{ |
253 |
0 |
sg.setEndRes(res); |
254 |
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} |
255 |
0 |
else if (res < sg.getStartRes()) |
256 |
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{ |
257 |
0 |
sg.setStartRes(res); |
258 |
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} |
259 |
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|
260 |
0 |
stretchingGroup = false; |
261 |
0 |
ap.paintAlignment(false, false); |
262 |
0 |
av.sendSelection(); |
263 |
|
} |
264 |
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|
265 |
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|
266 |
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|
267 |
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|
268 |
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|
269 |
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@param |
270 |
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|
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| 0% |
Uncovered Elements: 15 (15) |
Complexity: 2 |
Complexity Density: 0.15 |
|
271 |
0 |
@Override... |
272 |
|
public void mouseDragged(MouseEvent evt) |
273 |
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{ |
274 |
0 |
mouseDragging = true; |
275 |
0 |
ColumnSelection cs = av.getColumnSelection(); |
276 |
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|
277 |
0 |
int res = (evt.getX() / av.getCharWidth()) |
278 |
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+ av.getRanges().getStartRes(); |
279 |
0 |
res = Math.max(0, res); |
280 |
0 |
res = av.getAlignment().getHiddenColumns().visibleToAbsoluteColumn(res); |
281 |
0 |
res = Math.min(res, av.getAlignment().getWidth() - 1); |
282 |
0 |
min = Math.min(res, min); |
283 |
0 |
max = Math.max(res, max); |
284 |
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|
285 |
0 |
SequenceGroup sg = av.getSelectionGroup(); |
286 |
0 |
if (sg != null) |
287 |
|
{ |
288 |
0 |
stretchingGroup = true; |
289 |
0 |
cs.stretchGroup(res, sg, min, max); |
290 |
0 |
ap.paintAlignment(false, false); |
291 |
|
} |
292 |
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} |
293 |
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|
|
|
| 0% |
Uncovered Elements: 4 (4) |
Complexity: 2 |
Complexity Density: 1 |
|
294 |
0 |
@Override... |
295 |
|
public void mouseEntered(MouseEvent evt) |
296 |
|
{ |
297 |
0 |
if (mouseDragging) |
298 |
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{ |
299 |
0 |
ap.seqPanel.scrollCanvas(null); |
300 |
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} |
301 |
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} |
302 |
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|
|
|
| 0% |
Uncovered Elements: 4 (4) |
Complexity: 2 |
Complexity Density: 1 |
|
303 |
0 |
@Override... |
304 |
|
public void mouseExited(MouseEvent evt) |
305 |
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{ |
306 |
0 |
if (mouseDragging) |
307 |
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{ |
308 |
0 |
ap.seqPanel.scrollCanvas(evt); |
309 |
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} |
310 |
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} |
311 |
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|
|
|
| - |
Uncovered Elements: 0 (0) |
Complexity: 1 |
Complexity Density: - |
|
312 |
0 |
@Override... |
313 |
|
public void mouseClicked(MouseEvent evt) |
314 |
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{ |
315 |
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|
316 |
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} |
317 |
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|
|
|
| 0% |
Uncovered Elements: 7 (7) |
Complexity: 2 |
Complexity Density: 0.4 |
|
318 |
0 |
@Override... |
319 |
|
public void mouseMoved(MouseEvent evt) |
320 |
|
{ |
321 |
0 |
if (!av.hasHiddenColumns()) |
322 |
|
{ |
323 |
0 |
return; |
324 |
|
} |
325 |
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|
326 |
0 |
int res = (evt.getX() / av.getCharWidth()) |
327 |
|
+ av.getRanges().getStartRes(); |
328 |
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|
329 |
0 |
reveal = av.getAlignment().getHiddenColumns() |
330 |
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.getRegionWithEdgeAtRes(res); |
331 |
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|
332 |
0 |
repaint(); |
333 |
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} |
334 |
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|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
335 |
0 |
@Override... |
336 |
|
public void update(Graphics g) |
337 |
|
{ |
338 |
0 |
paint(g); |
339 |
|
} |
340 |
|
|
|
|
| 0% |
Uncovered Elements: 4 (4) |
Complexity: 2 |
Complexity Density: 1 |
|
341 |
0 |
@Override... |
342 |
|
public void paint(Graphics g) |
343 |
|
{ |
344 |
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|
345 |
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|
346 |
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|
347 |
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|
348 |
0 |
if (!av.getWrapAlignment()) |
349 |
|
{ |
350 |
0 |
drawScale(g, av.getRanges().getStartRes(), av.getRanges().getEndRes(), |
351 |
|
getSize().width, getSize().height); |
352 |
|
} |
353 |
|
} |
354 |
|
|
355 |
|
|
|
|
| 0% |
Uncovered Elements: 65 (65) |
Complexity: 12 |
Complexity Density: 0.27 |
|
356 |
0 |
public void drawScale(Graphics gg, int startx, int endx, int width,... |
357 |
|
int height) |
358 |
|
{ |
359 |
0 |
gg.setFont(av.getFont()); |
360 |
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|
361 |
0 |
gg.setColor(Color.white); |
362 |
0 |
gg.fillRect(0, 0, width, height); |
363 |
0 |
gg.setColor(Color.black); |
364 |
|
|
365 |
|
|
366 |
0 |
ColumnSelection cs = av.getColumnSelection(); |
367 |
0 |
HiddenColumns hidden = av.getAlignment().getHiddenColumns(); |
368 |
0 |
int avCharWidth = av.getCharWidth(); |
369 |
0 |
int avcharHeight = av.getCharHeight(); |
370 |
0 |
if (cs != null) |
371 |
|
{ |
372 |
0 |
gg.setColor(new Color(220, 0, 0)); |
373 |
0 |
boolean hasHiddenColumns = hidden.hasHiddenColumns(); |
374 |
0 |
for (int sel : cs.getSelected()) |
375 |
|
{ |
376 |
|
|
377 |
|
|
378 |
0 |
if (hasHiddenColumns) |
379 |
|
{ |
380 |
0 |
if (hidden.isVisible(sel)) |
381 |
|
{ |
382 |
0 |
sel = hidden.absoluteToVisibleColumn(sel); |
383 |
|
} |
384 |
|
else |
385 |
|
{ |
386 |
0 |
continue; |
387 |
|
} |
388 |
|
} |
389 |
|
|
390 |
0 |
if ((sel >= startx) && (sel <= endx)) |
391 |
|
{ |
392 |
0 |
gg.fillRect((sel - startx) * avCharWidth, 0, avCharWidth, |
393 |
|
getSize().height); |
394 |
|
} |
395 |
|
} |
396 |
|
} |
397 |
|
|
398 |
|
|
399 |
0 |
gg.setColor(Color.black); |
400 |
|
|
401 |
0 |
int maxX = 0; |
402 |
0 |
List<ScaleMark> marks = new ScaleRenderer().calculateMarks(av, startx, |
403 |
|
endx); |
404 |
|
|
405 |
0 |
FontMetrics fm = gg.getFontMetrics(av.getFont()); |
406 |
0 |
int y = avcharHeight; |
407 |
0 |
int yOf = fm.getDescent(); |
408 |
0 |
y -= yOf; |
409 |
0 |
for (ScaleMark mark : marks) |
410 |
|
{ |
411 |
0 |
boolean major = mark.major; |
412 |
0 |
int mpos = mark.column; |
413 |
0 |
String mstring = mark.text; |
414 |
0 |
if (mstring != null) |
415 |
|
{ |
416 |
0 |
if (mpos * avCharWidth > maxX) |
417 |
|
{ |
418 |
0 |
gg.drawString(mstring, mpos * avCharWidth, y); |
419 |
0 |
maxX = (mpos + 2) * avCharWidth + fm.stringWidth(mstring); |
420 |
|
} |
421 |
|
} |
422 |
0 |
if (major) |
423 |
|
{ |
424 |
0 |
gg.drawLine((mpos * avCharWidth) + (avCharWidth / 2), y + 2, |
425 |
|
(mpos * avCharWidth) + (avCharWidth / 2), y + (yOf * 2)); |
426 |
|
} |
427 |
|
else |
428 |
|
{ |
429 |
0 |
gg.drawLine((mpos * avCharWidth) + (avCharWidth / 2), y + yOf, |
430 |
|
(mpos * avCharWidth) + (avCharWidth / 2), y + (yOf * 2)); |
431 |
|
} |
432 |
|
} |
433 |
|
|
434 |
0 |
if (av.hasHiddenColumns()) |
435 |
|
{ |
436 |
0 |
gg.setColor(Color.blue); |
437 |
0 |
int res; |
438 |
0 |
if (av.getShowHiddenMarkers()) |
439 |
|
{ |
440 |
0 |
int widthx = 1 + endx - startx; |
441 |
0 |
Iterator<Integer> it = hidden.getStartRegionIterator(startx, |
442 |
|
startx + widthx + 1); |
443 |
0 |
while (it.hasNext()) |
444 |
|
{ |
445 |
0 |
res = it.next() - startx; |
446 |
|
|
447 |
0 |
gg.fillPolygon( |
448 |
|
new int[] |
449 |
|
{ -1 + res * avCharWidth - avcharHeight / 4, |
450 |
|
-1 + res * avCharWidth + avcharHeight / 4, |
451 |
|
-1 + res * avCharWidth }, |
452 |
|
new int[] |
453 |
|
{ y, y, y + 2 * yOf }, 3); |
454 |
|
} |
455 |
|
} |
456 |
|
} |
457 |
|
} |
458 |
|
|
|
|
| 0% |
Uncovered Elements: 4 (4) |
Complexity: 4 |
Complexity Density: 2 |
|
459 |
0 |
@Override... |
460 |
|
public void propertyChange(PropertyChangeEvent evt) |
461 |
|
{ |
462 |
|
|
463 |
|
|
464 |
|
|
465 |
|
|
466 |
|
|
467 |
|
|
468 |
0 |
if (evt.getPropertyName().equals(ViewportRanges.STARTRES) |
469 |
|
|| evt.getPropertyName().equals(ViewportRanges.STARTRESANDSEQ) |
470 |
|
|| evt.getPropertyName().equals(ViewportRanges.MOVE_VIEWPORT)) |
471 |
|
{ |
472 |
|
|
473 |
0 |
repaint(); |
474 |
|
} |
475 |
|
} |
476 |
|
|
477 |
|
} |