Coverage Report
File AlphaFoldAnnotationRowBuilder.java
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0% of files have more coverage
Classes
| Class | Line # | Actions | |||
|---|---|---|---|---|---|
| AlphaFoldAnnotationRowBuilder | 27 | 13 | 6 |
Contributing tests
This file is covered by 18 tests.
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Source view
| 1 | /* | |
| 2 | * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) | |
| 3 | * Copyright (C) $$Year-Rel$$ The Jalview Authors | |
| 4 | * | |
| 5 | * This file is part of Jalview. | |
| 6 | * | |
| 7 | * Jalview is free software: you can redistribute it and/or | |
| 8 | * modify it under the terms of the GNU General Public License | |
| 9 | * as published by the Free Software Foundation, either version 3 | |
| 10 | * of the License, or (at your option) any later version. | |
| 11 | * | |
| 12 | * Jalview is distributed in the hope that it will be useful, but | |
| 13 | * WITHOUT ANY WARRANTY; without even the implied warranty | |
| 14 | * of MERCHANTABILITY or FITNESS FOR A PARTICULAR | |
| 15 | * PURPOSE. See the GNU General Public License for more details. | |
| 16 | * | |
| 17 | * You should have received a copy of the GNU General Public License | |
| 18 | * along with Jalview. If not, see <http://www.gnu.org/licenses/>. | |
| 19 | * The Jalview Authors are detailed in the 'AUTHORS' file. | |
| 20 | */ | |
| 21 | package jalview.datamodel.annotations; | |
| 22 | ||
| 23 | import jalview.datamodel.Annotation; | |
| 24 | import jalview.structure.StructureImportSettings; | |
| 25 | import jalview.structure.StructureImportSettings.TFType; | |
| 26 | ||
| 27 | public class AlphaFoldAnnotationRowBuilder extends AnnotationRowBuilder | |
| 28 | { | |
| 29 | public static final String LABEL = "Alphafold Reliability"; | |
| 30 | ||
| 31 | 34 |  public AlphaFoldAnnotationRowBuilder() |
| 32 | { | |
| 33 | 34 | super(LABEL); |
| 34 | 34 | min = 0; |
| 35 | 34 | max = 100; |
| 36 | 34 | hasMinMax = true; |
| 37 | 34 | this.setTFType(StructureImportSettings.TFType.PLDDT); |
| 38 | } | |
| 39 | ||
| 40 | 2737 | @Override |
| 41 | public void processAnnotation(Annotation annotation) | |
| 42 | { | |
| 43 | 2737 | if (annotation.value > 90) |
| 44 | { | |
| 45 | // Very High | |
| 46 | 2027 | annotation.colour = new java.awt.Color(0, 83, 214); |
| 47 | } | |
| 48 | 2737 | if (annotation.value <= 90) |
| 49 | { | |
| 50 | // High | |
| 51 | 710 | annotation.colour = new java.awt.Color(101, 203, 243); |
| 52 | } | |
| 53 | 2737 | if (annotation.value <= 70) |
| 54 | { | |
| 55 | // Confident | |
| 56 | 598 | annotation.colour = new java.awt.Color(255, 219, 19); |
| 57 | } | |
| 58 | 2737 | if (annotation.value < 50) |
| 59 | { | |
| 60 | 52 | annotation.colour = new java.awt.Color(255, 125, 69); |
| 61 | } | |
| 62 | } | |
| 63 | } |