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  1. Jalview
  2. JAL-2305

Unit test failures: jalview.analysis.CrossRefTest

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    Details

    • Type: Bug
    • Status: In Progress
    • Priority: Major
    • Resolution: Unresolved
    • Affects Version/s: 2.10.0, 2.11.0, 2.11.1, 2.11.1.0, 2.11.2
    • Fix Version/s: 2.11.2, 2.11.3
    • Component/s: Test suite
    • Labels:

      Description

      testFindXrefSequences_forGeneAndTranscripts
      testFindXrefSequences_withFetch

      both fail because CrossRef::findXrefSequences returns null for the data they provide.

      testFindXrefSequences_uniprotEmblManyToMany fails due to some sort of ordering issue: when verifying mappings for p0ce19 it assumes the mapping it wants to check is assigned to the first DBRef returned, but actually it is the 4th

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          related with

          Bug - A problem which impairs or prevents the functions of the product. JAL-2894 Cannot view crossreference for EnsemblGenomes: DDB_G0283883

          • Major - Major loss of function.
          • In Progress

          Bug - A problem which impairs or prevents the functions of the product. JAL-2210 Extra sequences appear when showing Uniprot cross-refs from an Ensembl locus view

          • Major - Major loss of function.
          • Closed

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              People

              Assignee:
              jprocter James Procter
              Reporter:
              kmourao Kira Mourão
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                Dates

                Created:
                Updated: