simple 23-May-2019 13:05:42 Build Jalview Builds - jalviewjs - Jalview-JS-tasks-JAL-3274-build_details - Default Job #1 (JB-JB4-JOB1-1) started building on agent Default Agent simple 23-May-2019 13:05:42 simple 23-May-2019 13:05:42 Build working directory is /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1 simple 23-May-2019 13:05:42 Executing build Jalview Builds - jalviewjs - Jalview-JS-tasks-JAL-3274-build_details - Default Job #1 (JB-JB4-JOB1-1) simple 23-May-2019 13:05:42 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 23-May-2019 13:05:42 Checking out into /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1 simple 23-May-2019 13:05:42 Updating source code to revision: 0df0d8560e30bdd32d0f8982c1774fd141835086 simple 23-May-2019 13:05:42 Fetching 'refs/heads/Jalview-JS/tasks/JAL-3274-build_details' from 'http://source.jalview.org/git/jalview.git'. simple 23-May-2019 13:05:42 Checking out revision 0df0d8560e30bdd32d0f8982c1774fd141835086. simple 23-May-2019 13:05:42 Creating local git repository in '/srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1/.git'. simple 23-May-2019 13:05:42 Cloning into '/srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1'... simple 23-May-2019 13:05:42 done. simple 23-May-2019 13:05:53 Branch Jalview-JS/tasks/JAL-3274-build_details set up to track remote branch Jalview-JS/tasks/JAL-3274-build_details from origin. simple 23-May-2019 13:05:53 Switched to a new branch 'Jalview-JS/tasks/JAL-3274-build_details' simple 23-May-2019 13:05:53 Updated source code to revision: 0df0d8560e30bdd32d0f8982c1774fd141835086 simple 23-May-2019 13:05:53 Finished task 'Checkout Default Repository' with result: Success simple 23-May-2019 13:05:53 Running pre-build action: VCS Version Collector simple 23-May-2019 13:05:53 Running pre-build action: Artifactory Release Staging simple 23-May-2019 13:05:53 Starting task 'run jalviewjs build' of type 'com.atlassian.bamboo.plugins.ant:task.builder.ant' command 23-May-2019 13:05:53 Beginning to execute external process for build 'Jalview Builds - jalviewjs - Jalview-JS-tasks-JAL-3274-build_details - Default Job #1 (JB-JB4-JOB1-1)'\n ... running command line: \n/home/bamboo/buildtools/x11-ant/bin/ant -Djava.io.tmpdir=/home/bamboo/latest/temp/JB-JB4-JOB1 -f build.xml build-site\n ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=Jalview-JS/tasks/JAL-3274-build_details\nbamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr\nbamboo_planRepository_1_branchDisplayName=Jalview-JS/tasks/JAL-3274-build_details\nbamboo_repository_revision_number=0df0d8560e30bdd32d0f8982c1774fd141835086\nbamboo_repository_9175078_branch_name=Jalview-JS/tasks/JAL-3274-build_details\nbamboo_resultsUrl=https://builds.jalview.org/browse/JB-JB4-JOB1-1\nbamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1\nbamboo_planRepository_1_name=Jalview Git\nbamboo_buildKey=JB-JB4-JOB1\nbamboo_capability_system_jdk_JDK_1_8_0_171=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.171-8.b10.el7_5.x86_64\nbamboo_shortPlanName=Jalview-JS-tasks-JAL-3274-build_details\nbamboo_planRepository_name=Jalview Git\nbamboo_buildNumber=1\nbamboo_capability_system_jdk_OpenJDK_11_JRE_only=/home/bamboo/buildtools/jvm/jre11_x64_linux\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-JB4-JOB1-1\nbamboo_repository_9175078_git_branch=Jalview-JS/tasks/JAL-3274-build_details\nbamboo_planRepository_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_agentId=196609\nbamboo_planName=Jalview Builds - jalviewjs - Jalview-JS-tasks-JAL-3274-build_details\nbamboo_shortPlanKey=JB4\nbamboo_shortJobKey=JOB1\nbamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jvm/jdk11_x64_linux\nbamboo_planRepository_revision=0df0d8560e30bdd32d0f8982c1774fd141835086\nbamboo_buildTimeStamp=2019-05-23T13:05:42.168+01:00\nbamboo_repository_9175078_name=Jalview Git\nbamboo_repository_git_branch=Jalview-JS/tasks/JAL-3274-build_details\nbamboo_buildResultKey=JB-JB4-JOB1-1\nbamboo_repository_branch_name=Jalview-JS/tasks/JAL-3274-build_details\nbamboo_buildPlanName=Jalview Builds - jalviewjs - Jalview-JS-tasks-JAL-3274-build_details - Default Job\nbamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11\nbamboo_planRepository_1_revision=0df0d8560e30bdd32d0f8982c1774fd141835086\nbamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant\nbamboo_repository_name=Jalview Git\nJAVA_HOME=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.171-8.b10.el7_5.x86_64\nbamboo_buildFailed=false\nANT_HOME=/home/bamboo/buildtools/x11-ant\nbamboo_planRepository_branch=Jalview-JS/tasks/JAL-3274-build_details\nbamboo_repository_9175078_git_username=\nbamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir\nbamboo_capability_system_git_executable=/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_branchDisplayName=Jalview-JS/tasks/JAL-3274-build_details\nbamboo_planRepository_1_type=gitv2\nbamboo_planRepository_branchName=Jalview-JS/tasks/JAL-3274-build_details\nbamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11\nbamboo_repository_9175078_revision_number=0df0d8560e30bdd32d0f8982c1774fd141835086\nbamboo_capability_system_builderivy_Ivy=/usr\nbamboo_capability_system_jdk_JDK=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.171-8.b10.el7_5.x86_64\nbamboo_plan_storageTag=plan-8978507\nbamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle\nbamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=gitv2\nbamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_capability_system_builder_ant_Ant=/usr/share/ant\nbamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven\nbamboo_tmp_directory=/srv/bamboo/bamboo-home/temp\nbamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1\nbamboo_planKey=JB-JB4\nbamboo_planRepository_1_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.171-8.b10.el7_5.x86_64\nbamboo_repository_9175078_git_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_planRepository_1_branchName=Jalview-JS/tasks/JAL-3274-build_details\nPATH=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.171-8.b10.el7_5.x86_64/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin\n build 23-May-2019 13:05:57 Buildfile: /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1/build.xml build 23-May-2019 13:05:57 build 23-May-2019 13:05:57 init: build 23-May-2019 13:05:57 build 23-May-2019 13:05:57 prepare: build 23-May-2019 13:05:57 [mkdir] Created dir: /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1/classes build 23-May-2019 13:05:57 [copy] Copying 282 files to /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1/classes build 23-May-2019 13:05:57 build 23-May-2019 13:05:57 buildPropertiesFile: build 23-May-2019 13:05:58 [properties] write property file /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1/classes/.build_properties build 23-May-2019 13:05:58 build 23-May-2019 13:05:58 prepare-site: build 23-May-2019 13:05:58 build 23-May-2019 13:05:58 clean-site: build 23-May-2019 13:05:58 [delete] Deleting directory /home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site build 23-May-2019 13:05:58 [mkdir] Created dir: /home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site build 23-May-2019 13:05:58 build 23-May-2019 13:05:58 compile-site: build 23-May-2019 13:05:58 [copy] Copying 1 file to /home/bamboo/buildtools/eclipse/eclipse-js/dropins build 23-May-2019 13:06:01 [exec] HEAD is now at 7041024 Merge branch 'Jalview-JS/JAL-3253-applet' of https://source.jalview.org/git/jalview.git into Jalview-JS/JAL-3253-applet build 23-May-2019 13:06:02 [exec] You are not currently on a branch. Please specify which build 23-May-2019 13:06:02 [exec] branch you want to merge with. See git-pull(1) for details. build 23-May-2019 13:06:02 [exec] build 23-May-2019 13:06:02 [exec] git pull build 23-May-2019 13:06:02 [exec] build 23-May-2019 13:06:03 [exec] Result: 1 build 23-May-2019 13:06:04 [exec] Previous HEAD position was 7041024... Merge branch 'Jalview-JS/JAL-3253-applet' of https://source.jalview.org/git/jalview.git into Jalview-JS/JAL-3253-applet build 23-May-2019 13:06:04 [exec] HEAD is now at 0df0d85... JAL-3274 import build properties and authors resources from JalviewJS site or classes directory, or jalview.jar as appropriate. build 23-May-2019 13:06:04 [copy] Copying 1 file to /home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js build 23-May-2019 13:06:04 [delete] Deleting: /home/bamboo/buildtools/eclipse/eclipse-js-workspace/.metadata/.log build 23-May-2019 13:06:26 [exec] org.eclipse.m2e.logback.configuration: The org.eclipse.m2e.logback.configuration bundle was activated before the state location was initialized. Will retry after the state location is initialized. build 23-May-2019 13:06:38 [exec] org.eclipse.m2e.logback.configuration: Logback config file: /home/bamboo/buildtools/eclipse/eclipse-js-workspace/.metadata/.plugins/org.eclipse.m2e.logback.configuration/logback.1.9.0.20180606-2036.xml build 23-May-2019 13:06:38 [exec] SLF4J: Class path contains multiple SLF4J bindings. build 23-May-2019 13:06:38 [exec] SLF4J: Found binding in [bundleresource://981.fwk1445157774:1/org/slf4j/impl/StaticLoggerBinder.class] build 23-May-2019 13:06:38 [exec] SLF4J: Found binding in [bundleresource://981.fwk1445157774:2/org/slf4j/impl/StaticLoggerBinder.class] build 23-May-2019 13:06:38 [exec] SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an explanation. build 23-May-2019 13:06:38 [exec] SLF4J: Actual binding is of type [ch.qos.logback.classic.util.ContextSelectorStaticBinder] build 23-May-2019 13:06:38 [exec] org.eclipse.m2e.logback.configuration: Initializing logback build 23-May-2019 13:06:40 [exec] Building workspace build 23-May-2019 13:06:40 [exec] Building '/RemoteSystemsTempFiles' build 23-May-2019 13:06:40 [exec] Building '/jalview-js' build 23-May-2019 13:06:40 [exec] Invoking 'Java Builder' on '/jalview-js'. build 23-May-2019 13:06:44 [exec] net.sf.j2s.core.3.2.4/3.2.4.07 started build 23-May-2019 13:06:44 [exec] CompilationParticipant started build 23-May-2019 13:06:45 [exec] isActive true /home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js build 23-May-2019 13:06:45 [exec] aboutToBuild /home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js build 23-May-2019 13:06:45 [exec] cleanStarting /home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js build 23-May-2019 13:06:45 [exec] Cleaning output folder for jalview-js build 23-May-2019 13:06:45 [exec] Build done build 23-May-2019 13:06:46 [exec] Invoking 'Faceted Project Validation Builder' on '/jalview-js'. build 23-May-2019 13:06:46 [exec] Building workspace build 23-May-2019 13:06:46 [exec] Building '/.org.eclipse.jdt.core.external.folders' build 23-May-2019 13:06:46 [exec] Building '/RemoteSystemsTempFiles' build 23-May-2019 13:06:46 [exec] Building '/jalview-js' build 23-May-2019 13:06:46 [exec] Invoking 'Java Builder' on '/jalview-js'. build 23-May-2019 13:06:46 [exec] isActive true /home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js build 23-May-2019 13:06:46 [exec] aboutToBuild /home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js build 23-May-2019 13:06:46 [exec] Preparing to build jalview-js build 23-May-2019 13:06:46 [exec] Cleaning output folder for jalview-js build 23-May-2019 13:06:46 [exec] cleanStarting /home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js build 23-May-2019 13:06:46 [exec] Copying resources to the output folder build 23-May-2019 13:06:46 [exec] Analyzing sources build 23-May-2019 13:06:46 [exec] buildStarting 997 files, isBatch=true build 23-May-2019 13:06:46 [exec] Compiling jalview-js/src/com/github/reinert/jjschema build 23-May-2019 13:06:47 [exec] building JavaScript /home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js build 23-May-2019 13:06:47 [exec] class replacement org.apache.log4j. --> jalview.javascript.log4j. build 23-May-2019 13:06:47 [exec] transpiling SourceFile[/jalview-js/src/com/github/reinert/jjschema/Attributes.java] build 23-May-2019 13:06:47 [exec] j2s.compiler.status = enable build 23-May-2019 13:06:47 [exec] j2s.site.directory = null build 23-May-2019 13:06:47 [exec] j2s.log.methods.declared = null build 23-May-2019 13:06:47 [exec] j2s.log.methods.called = null build 23-May-2019 13:06:47 [exec] j2s.excluded.paths = test;testng;util build 23-May-2019 13:06:47 [exec] j2s.testing = null build 23-May-2019 13:06:47 [exec] j2s.compiler.nonqualified.packages = null build 23-May-2019 13:06:47 [exec] j2s.compiler.nonqualified.classes = null build 23-May-2019 13:06:47 [exec] j2s.compiler.mode = null build 23-May-2019 13:06:47 [exec] j2s.class.replacements = org.apache.log4j.->jalview.javascript.log4j. build 23-May-2019 13:06:47 [exec] j2s.template.html = null build 23-May-2019 13:06:47 [exec] using HTML template /home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/template.html build 23-May-2019 13:06:48 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/AmpersandRule.java] build 23-May-2019 13:06:48 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/Any.java] build 23-May-2019 13:06:48 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/BackG.java] build 23-May-2019 13:06:48 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/BackMatch.java] build 23-May-2019 13:06:48 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/BackRefRule.java] build 23-May-2019 13:06:48 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/Backup.java] build 23-May-2019 13:06:48 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/BasicStringBufferLike.java] build 23-May-2019 13:06:48 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/Bits.java] build 23-May-2019 13:06:48 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/Boundary.java] build 23-May-2019 13:06:48 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/Bracket.java] build 23-May-2019 13:06:48 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/CaseMgr.java] build 23-May-2019 13:06:48 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/ChangeRule.java] build 23-May-2019 13:06:48 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/CodeRule.java] build 23-May-2019 13:06:48 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/Ctrl.java] build 23-May-2019 13:06:48 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/Custom.java] build 23-May-2019 13:06:48 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/CustomEndpoint.java] build 23-May-2019 13:06:48 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/DirFileRegex.java] build 23-May-2019 13:06:48 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/DotMulti.java] build 23-May-2019 13:06:48 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/End.java] build 23-May-2019 13:06:48 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/FastBracket.java] build 23-May-2019 13:06:48 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/FastMulti.java] build 23-May-2019 13:06:48 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/FileRegex.java] build 23-May-2019 13:06:48 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/Group.java] build 23-May-2019 13:06:48 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/LeftRule.java] build 23-May-2019 13:06:48 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/Multi.java] build 23-May-2019 13:06:48 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/MultiMin.java] build 23-May-2019 13:06:48 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/Multi_stage2.java] build 23-May-2019 13:06:48 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/NoPattern.java] build 23-May-2019 13:06:48 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/NonDirFileRegex.java] build 23-May-2019 13:06:48 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/NotImplementedError.java] build 23-May-2019 13:06:49 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/NullPattern.java] build 23-May-2019 13:06:49 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/NullRule.java] build 23-May-2019 13:06:49 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/Or.java] build 23-May-2019 13:06:49 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/OrMark.java] build 23-May-2019 13:06:49 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/PartialBuffer.java] build 23-May-2019 13:06:49 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/Pattern.java] build 23-May-2019 13:06:49 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/PatternSub.java] build 23-May-2019 13:06:49 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/PopRule.java] build 23-May-2019 13:06:49 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/Prop.java] build 23-May-2019 13:06:49 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/Pthings.java] build 23-May-2019 13:06:49 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/PushRule.java] build 23-May-2019 13:06:49 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/RBuffer.java] build 23-May-2019 13:06:49 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/Range.java] build 23-May-2019 13:06:49 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/RegOpt.java] build 23-May-2019 13:06:49 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/RegRes.java] build 23-May-2019 13:06:49 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/RegSyntax.java] build 23-May-2019 13:06:49 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/RegSyntaxError.java] build 23-May-2019 13:06:49 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/Regex.java] build 23-May-2019 13:06:49 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/RegexReader.java] build 23-May-2019 13:06:49 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/RegexTokenizer.java] build 23-May-2019 13:06:49 [exec] transpiling SourceFile[/jalview-js/src/com/stevesoft/pat/RegexWriter.java] build 23-May-2019 13:06:49 [exec] transpiling 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SourceFile[/jalview-js/src/jalview/ext/varna/JalviewVarnaBinding.java] build 23-May-2019 13:06:57 [exec] transpiling SourceFile[/jalview-js/src/jalview/ext/varna/RnaModel.java] build 23-May-2019 13:06:57 [exec] transpiling SourceFile[/jalview-js/src/jalview/ext/varna/VarnaCommands.java] build 23-May-2019 13:06:57 [exec] transpiling SourceFile[/jalview-js/src/jalview/fts/api/FTSData.java] build 23-May-2019 13:06:57 [exec] transpiling SourceFile[/jalview-js/src/jalview/fts/api/FTSDataColumnI.java] build 23-May-2019 13:06:57 [exec] transpiling SourceFile[/jalview-js/src/jalview/fts/api/FTSRestClientI.java] build 23-May-2019 13:06:57 [exec] transpiling SourceFile[/jalview-js/src/jalview/fts/api/GFTSPanelI.java] build 23-May-2019 13:06:57 [exec] transpiling SourceFile[/jalview-js/src/jalview/fts/core/DecimalFormatTableCellRenderer.java] build 23-May-2019 13:06:57 [exec] transpiling SourceFile[/jalview-js/src/jalview/fts/core/FTSDataColumnPreferences.java] build 23-May-2019 13:06:57 [exec] transpiling SourceFile[/jalview-js/src/jalview/fts/core/FTSRestClient.java] build 23-May-2019 13:06:57 [exec] transpiling SourceFile[/jalview-js/src/jalview/fts/core/FTSRestRequest.java] build 23-May-2019 13:06:57 [exec] transpiling SourceFile[/jalview-js/src/jalview/fts/core/FTSRestResponse.java] build 23-May-2019 13:06:57 [exec] transpiling SourceFile[/jalview-js/src/jalview/fts/core/GFTSPanel.java] build 23-May-2019 13:06:57 [exec] transpiling SourceFile[/jalview-js/src/jalview/fts/service/pdb/PDBFTSPanel.java] build 23-May-2019 13:06:57 [exec] transpiling SourceFile[/jalview-js/src/jalview/fts/service/pdb/PDBFTSRestClient.java] build 23-May-2019 13:06:57 [exec] transpiling SourceFile[/jalview-js/src/jalview/fts/service/uniprot/UniProtFTSRestClient.java] build 23-May-2019 13:06:57 [exec] transpiling SourceFile[/jalview-js/src/jalview/fts/service/uniprot/UniprotFTSPanel.java] build 23-May-2019 13:06:57 [exec] transpiling SourceFile[/jalview-js/src/jalview/gui/AlignExportOptions.java] build 23-May-2019 13:06:57 [exec] transpiling SourceFile[/jalview-js/src/jalview/gui/AlignFrame.java] build 23-May-2019 13:06:58 [exec] transpiling SourceFile[/jalview-js/src/jalview/gui/AlignViewport.java] build 23-May-2019 13:06:58 [exec] transpiling SourceFile[/jalview-js/src/jalview/gui/AlignmentPanel.java] build 23-May-2019 13:06:58 [exec] transpiling SourceFile[/jalview-js/src/jalview/gui/AnnotationChooser.java] build 23-May-2019 13:06:58 [exec] transpiling SourceFile[/jalview-js/src/jalview/gui/AnnotationColourChooser.java] build 23-May-2019 13:06:58 [exec] transpiling SourceFile[/jalview-js/src/jalview/gui/AnnotationColumnChooser.java] build 23-May-2019 13:06:58 [exec] transpiling SourceFile[/jalview-js/src/jalview/gui/AnnotationExporter.java] build 23-May-2019 13:06:58 [exec] transpiling SourceFile[/jalview-js/src/jalview/gui/AnnotationLabels.java] build 23-May-2019 13:06:58 [exec] transpiling SourceFile[/jalview-js/src/jalview/gui/AnnotationPanel.java] build 23-May-2019 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SourceFile[/jalview-js/src/jalview/gui/ChimeraViewFrame.java] build 23-May-2019 13:06:59 [exec] transpiling SourceFile[/jalview-js/src/jalview/gui/ColourMenuHelper.java] build 23-May-2019 13:06:59 [exec] transpiling SourceFile[/jalview-js/src/jalview/gui/ComboBoxTooltipRenderer.java] build 23-May-2019 13:06:59 [exec] transpiling SourceFile[/jalview-js/src/jalview/gui/Console.java] build 23-May-2019 13:06:59 [exec] org.apache.log4j.Layout -> jalview.javascript.log4j.Layout build 23-May-2019 13:06:59 [exec] org.apache.log4j.SimpleLayout -> jalview.javascript.log4j.SimpleLayout build 23-May-2019 13:06:59 [exec] org.apache.log4j.SimpleLayout -> jalview.javascript.log4j.SimpleLayout build 23-May-2019 13:06:59 [exec] org.apache.log4j.SimpleLayout -> jalview.javascript.log4j.SimpleLayout build 23-May-2019 13:06:59 [exec] org.apache.log4j.Logger -> jalview.javascript.log4j.Logger build 23-May-2019 13:06:59 [exec] org.apache.log4j.Appender -> jalview.javascript.log4j.Appender build 23-May-2019 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SourceFile[/jalview-js/src/jalview/gui/Finder.java] build 23-May-2019 13:07:00 [exec] transpiling SourceFile[/jalview-js/src/jalview/gui/FontChooser.java] build 23-May-2019 13:07:00 [exec] transpiling SourceFile[/jalview-js/src/jalview/gui/Help.java] build 23-May-2019 13:07:00 [exec] transpiling SourceFile[/jalview-js/src/jalview/gui/IProgressIndicator.java] build 23-May-2019 13:07:00 [exec] transpiling SourceFile[/jalview-js/src/jalview/gui/IProgressIndicatorHandler.java] build 23-May-2019 13:07:00 [exec] transpiling SourceFile[/jalview-js/src/jalview/gui/IdCanvas.java] build 23-May-2019 13:07:00 [exec] transpiling SourceFile[/jalview-js/src/jalview/gui/IdPanel.java] build 23-May-2019 13:07:00 [exec] transpiling SourceFile[/jalview-js/src/jalview/gui/IdwidthAdjuster.java] build 23-May-2019 13:07:00 [exec] transpiling SourceFile[/jalview-js/src/jalview/gui/ImageExporter.java] build 23-May-2019 13:07:00 [exec] transpiling SourceFile[/jalview-js/src/jalview/gui/JDatabaseTree.java] build 23-May-2019 13:07:00 [exec] transpiling SourceFile[/jalview-js/src/jalview/gui/JalviewAppender.java] build 23-May-2019 13:07:00 [exec] org.apache.log4j.WriterAppender -> jalview.javascript.log4j.WriterAppender build 23-May-2019 13:07:00 [exec] org.apache.log4j.spi.LoggingEvent -> jalview.javascript.log4j.spi.LoggingEvent build 23-May-2019 13:07:00 [exec] org.apache.log4j.spi.LoggingEvent -> jalview.javascript.log4j.spi.LoggingEvent build 23-May-2019 13:07:00 [exec] transpiling SourceFile[/jalview-js/src/jalview/gui/JalviewBooleanRadioButtons.java] build 23-May-2019 13:07:00 [exec] transpiling SourceFile[/jalview-js/src/jalview/gui/JalviewChangeSupport.java] build 23-May-2019 13:07:00 [exec] transpiling SourceFile[/jalview-js/src/jalview/gui/JalviewChimeraBindingModel.java] build 23-May-2019 13:07:00 [exec] transpiling SourceFile[/jalview-js/src/jalview/gui/JalviewColourChooser.java] build 23-May-2019 13:07:00 [exec] default method Ljalview/gui/JalviewColourChooser$ColourChooserListener;.cancel()V build 23-May-2019 13:07:00 [exec] transpiling SourceFile[/jalview-js/src/jalview/gui/JalviewDialog.java] build 23-May-2019 13:07:00 [exec] transpiling SourceFile[/jalview-js/src/jalview/gui/JvOptionPane.java] build 23-May-2019 13:07:00 [exec] transpiling SourceFile[/jalview-js/src/jalview/gui/JvSwingUtils.java] build 23-May-2019 13:07:00 [exec] transpiling SourceFile[/jalview-js/src/jalview/gui/LineartOptions.java] build 23-May-2019 13:07:00 [exec] transpiling SourceFile[/jalview-js/src/jalview/gui/OOMWarning.java] build 23-May-2019 13:07:00 [exec] transpiling SourceFile[/jalview-js/src/jalview/gui/OptsAndParamsPage.java] build 23-May-2019 13:07:00 [exec] transpiling SourceFile[/jalview-js/src/jalview/gui/OptsParametersContainerI.java] build 23-May-2019 13:07:00 [exec] transpiling SourceFile[/jalview-js/src/jalview/gui/OverviewCanvas.java] build 23-May-2019 13:07:00 [exec] transpiling 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SourceFile[/jalview-js/src/jalview/io/ModellerDescription.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/NewickFile.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/PDBFeatureSettings.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/PIRFile.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/PfamFile.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/PhylipFile.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/PileUpfile.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/RnamlFile.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/ScoreMatrixFile.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/SequenceAnnotationReport.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/SimpleBlastFile.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/StockholmFile.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/StructureFile.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/TCoffeeScoreFile.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/VamsasAppDatastore.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/WSWUBlastClient.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/cache/AppCache.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/cache/JvCacheableInputBox.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/gff/ExonerateHelper.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/gff/Gff2Helper.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/gff/Gff3Helper.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/gff/GffConstants.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/gff/GffHelperBase.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/gff/GffHelperFactory.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/gff/GffHelperI.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/gff/InterProScanHelper.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/gff/SequenceOntologyFactory.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/gff/SequenceOntologyI.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/gff/SequenceOntologyLite.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/packed/DataProvider.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/packed/JalviewDataset.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/packed/ParsePackedSet.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/packed/SimpleDataProvider.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/vamsas/Datasetsequence.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/vamsas/DatastoreItem.java] build 23-May-2019 13:07:03 [exec] org.apache.log4j.Logger -> jalview.javascript.log4j.Logger build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/vamsas/DatastoreRegistry.java] build 23-May-2019 13:07:03 [exec] org.apache.log4j.Logger -> jalview.javascript.log4j.Logger build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/vamsas/Dbref.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/vamsas/LocalDocSyncObject.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/vamsas/Rangetype.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/vamsas/Sequencefeature.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/vamsas/Sequencemapping.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/vamsas/Tree.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/io/vcf/VCFLoader.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/javascript/JSFunctionExec.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/javascript/JalviewLiteJsApi.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/javascript/JsCallBack.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/javascript/JsSelectionSender.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/javascript/MouseOverListener.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/javascript/MouseOverStructureListener.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/javascript/json/JSON.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/javascript/log4j/Appender.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/javascript/log4j/ConsoleAppender.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/javascript/log4j/Layout.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/javascript/log4j/Level.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/javascript/log4j/Logger.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/javascript/log4j/Priority.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/javascript/log4j/SimpleLayout.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/javascript/log4j/WriterAppender.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/javascript/log4j/spi/LoggingEvent.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/javascript/log4j/spi/OptionHandler.java] build 23-May-2019 13:07:03 [exec] transpiling SourceFile[/jalview-js/src/jalview/javascript/web/Client.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/javascript/web/ClientResponse.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/javascript/web/WebResource.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/jbgui/GAlignFrame.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/jbgui/GAlignmentPanel.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/jbgui/GCutAndPasteHtmlTransfer.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/jbgui/GCutAndPasteTransfer.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/jbgui/GDesktop.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/jbgui/GFinder.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/jbgui/GFontChooser.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/jbgui/GPCAPanel.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/jbgui/GPairwiseAlignPanel.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/jbgui/GPreferences.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/jbgui/GRestInputParamEditDialog.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/jbgui/GRestServiceEditorPane.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/jbgui/GRnaStructureViewer.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/jbgui/GSequenceLink.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/jbgui/GSliderPanel.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/jbgui/GSplitFrame.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/jbgui/GStructureChooser.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/jbgui/GStructureViewer.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/jbgui/GTreePanel.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/jbgui/GUserDefinedColours.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/jbgui/GWebserviceInfo.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/jbgui/GWsPreferences.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/json/binding/biojs/BioJSReleasePojo.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/json/binding/biojs/BioJSRepositoryPojo.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/json/binding/biojson/v1/AlignmentAnnotationPojo.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/json/binding/biojson/v1/AlignmentPojo.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/json/binding/biojson/v1/AnnotationDisplaySettingPojo.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/json/binding/biojson/v1/AnnotationPojo.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/json/binding/biojson/v1/ColourSchemeMapper.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/json/binding/biojson/v1/SequenceFeaturesPojo.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/json/binding/biojson/v1/SequenceGrpPojo.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/json/binding/biojson/v1/SequencePojo.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/math/AlignmentDimension.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/math/Matrix.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/math/MatrixI.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/math/RotatableMatrix.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/math/SparseMatrix.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/project/Jalview2XML.java] build 23-May-2019 13:07:04 [exec] transpiling SourceFile[/jalview-js/src/jalview/renderer/AnnotationRenderer.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/renderer/AwtRenderPanelI.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/renderer/OverviewRenderer.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/renderer/OverviewResColourFinder.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/renderer/ResidueColourFinder.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/renderer/ResidueShader.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/renderer/ResidueShaderI.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/renderer/ScaleRenderer.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/renderer/seqfeatures/FeatureColourFinder.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/renderer/seqfeatures/FeatureRenderer.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/rest/RestHandler.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/schemes/AnnotationColourGradient.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/schemes/Blosum62ColourScheme.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/schemes/BuriedColourScheme.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/schemes/ClustalxColourScheme.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/schemes/ColourSchemeI.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/schemes/ColourSchemeLoader.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/schemes/ColourSchemeProperty.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/schemes/ColourSchemes.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/schemes/Consensus.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/schemes/CovariationColourScheme.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/schemes/FeatureColour.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/schemes/FeatureSettingsAdapter.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/schemes/FollowerColourScheme.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/schemes/HelixColourScheme.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/schemes/HydrophobicColourScheme.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/schemes/IdColourScheme.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/schemes/JalviewColourScheme.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/schemes/NucleotideColourScheme.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/schemes/PIDColourScheme.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/schemes/PurinePyrimidineColourScheme.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/schemes/RNAHelicesColour.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/schemes/RNAHelicesColourChooser.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/schemes/RNAInteractionColourScheme.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/schemes/ResidueColourScheme.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/schemes/ResidueProperties.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/schemes/ScoreColourScheme.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/schemes/StrandColourScheme.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/schemes/TCoffeeColourScheme.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/schemes/TaylorColourScheme.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/schemes/TurnColourScheme.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/schemes/UserColourScheme.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/schemes/ZappoColourScheme.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/structure/AlignmentViewPanelListener.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/structure/AtomSpec.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/structure/CommandListener.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/structure/SecondaryStructureListener.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/structure/SelectionListener.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/structure/SelectionSource.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/structure/SequenceListener.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/structure/StructureImportSettings.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/structure/StructureListener.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/structure/StructureMapping.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/structure/StructureMappingcommandSet.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/structure/StructureSelectionManager.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/structure/VamsasListener.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/structure/VamsasSource.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/structures/models/AAStructureBindingModel.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/structures/models/SequenceStructureBindingModel.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/urls/CustomUrlProvider.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/urls/IdOrgSettings.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/urls/IdentifiersUrlProvider.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/urls/UrlLinkDisplay.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/urls/UrlLinkTableModel.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/urls/UrlProvider.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/urls/UrlProviderImpl.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/urls/api/UrlProviderFactoryI.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/urls/api/UrlProviderI.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/urls/applet/AppletUrlProviderFactory.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/urls/desktop/DesktopUrlProviderFactory.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/util/AWTConsole.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/util/ArrayUtils.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/util/BrowserLauncher.java] build 23-May-2019 13:07:05 [exec] native: Ljalview/util/BrowserLauncher;.ICStart([II)I build 23-May-2019 13:07:05 [exec] native: Ljalview/util/BrowserLauncher;.ICStop([I)I build 23-May-2019 13:07:05 [exec] native: Ljalview/util/BrowserLauncher;.ICLaunchURL(I[B[BI[I[I)I build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/util/CaseInsensitiveString.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/util/ColorUtils.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/util/Comparison.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/util/DBRefUtils.java] build 23-May-2019 13:07:05 [exec] default method Ljalview/util/DBRefUtils$DbRefComp;.matches(Ljalview/datamodel/DBRefEntry;Ljalview/datamodel/DBRefEntry;)Z build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/util/DnaUtils.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/util/Format.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/util/GroupUrlLink.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/util/HttpUtils.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/util/ImageMaker.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/util/IntRangeComparator.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/util/JSONUtils.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/util/LinkedIdentityHashSet.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/util/MapList.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/util/MappingUtils.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/util/MathUtils.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/util/MessageManager.java] build 23-May-2019 13:07:05 [exec] org.apache.log4j.Logger -> jalview.javascript.log4j.Logger build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/util/ParseHtmlBodyAndLinks.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/util/Platform.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/util/QuickSort.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/util/ReverseListIterator.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/util/SetUtils.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/util/ShiftList.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/util/SparseCount.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/util/StringUtils.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/util/TableSorter.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/util/UrlConstants.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/util/UrlLink.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/util/dialogrunner/DialogRunnerI.java] build 23-May-2019 13:07:05 [exec] default method Ljalview/util/dialogrunner/DialogRunnerI;.handleResponse(Ljava/lang/Object;)V build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/util/jarInputStreamProvider.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/util/matcher/Condition.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/util/matcher/Matcher.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/util/matcher/MatcherI.java] build 23-May-2019 13:07:05 [exec] transpiling SourceFile[/jalview-js/src/jalview/viewmodel/AlignmentViewport.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/viewmodel/OverviewDimensions.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/viewmodel/OverviewDimensionsHideHidden.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/viewmodel/OverviewDimensionsShowHidden.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/viewmodel/PCAModel.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/viewmodel/ViewportListenerI.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/viewmodel/ViewportProperties.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/viewmodel/ViewportRanges.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/viewmodel/annotationfilter/AnnotationFilterParameter.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/viewmodel/seqfeatures/FeatureRendererModel.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/viewmodel/seqfeatures/FeatureRendererSettings.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/viewmodel/seqfeatures/FeatureSettingsModel.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/viewmodel/seqfeatures/FeaturesDisplayed.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/viewmodel/styles/ViewStyle.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/workers/AlignCalcManager.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/workers/AlignCalcWorker.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/workers/AlignmentAnnotationFactory.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/workers/AnnotationProviderI.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/workers/AnnotationWorker.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/workers/ColumnCounterSetWorker.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/workers/ComplementConsensusThread.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/workers/ConsensusThread.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/workers/ConservationThread.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/workers/FeatureSetCounterI.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/workers/StrucConsensusThread.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/AWSThread.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/AWsJob.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/DBRefFetcher.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/HttpClientUtils.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/JobStateSummary.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/SequenceFetcher.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/SequenceFetcherFactory.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/WSClient.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/WSClientI.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/WSMenuEntryProviderI.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/dbsources/EbiFileRetrievedProxy.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/dbsources/EmblCdsSource.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/dbsources/EmblSource.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/dbsources/EmblXmlSource.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/dbsources/GeneDbSource.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/dbsources/Pdb.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/dbsources/Pfam.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/dbsources/PfamFull.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/dbsources/PfamSeed.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/dbsources/Rfam.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/dbsources/RfamFull.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/dbsources/RfamSeed.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/dbsources/Uniprot.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/dbsources/UniprotName.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/dbsources/Xfam.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/ebi/EBIFetchClient.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/io/mime/HttpContentHandler.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/io/mime/JalviewMimeContentHandler.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/io/mime/MimeTypes.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/jws1/Annotate3D.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/jws1/Discoverer.java] build 23-May-2019 13:07:06 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/jws1/JPredClient.java] build 23-May-2019 13:07:06 [exec] transpiling 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SourceFile[/jalview-js/src/jalview/ws/jws2/AADisorderClient.java] build 23-May-2019 13:07:07 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/jws2/AWS2Thread.java] build 23-May-2019 13:07:07 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/jws2/AbstractJabaCalcWorker.java] build 23-May-2019 13:07:07 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/jws2/JWs2Job.java] build 23-May-2019 13:07:07 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/jws2/JabaParamStore.java] build 23-May-2019 13:07:07 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/jws2/JabaPreset.java] build 23-May-2019 13:07:07 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/jws2/JabaWsServerQuery.java] build 23-May-2019 13:07:07 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/jws2/JabawsCalcWorker.java] build 23-May-2019 13:07:07 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/jws2/JabawsMsaInterfaceAlignCalcWorker.java] build 23-May-2019 13:07:07 [exec] 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23-May-2019 13:07:07 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/params/ParamDatastoreI.java] build 23-May-2019 13:07:07 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/params/ParamManager.java] build 23-May-2019 13:07:07 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/params/ParameterI.java] build 23-May-2019 13:07:07 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/params/ValueConstrainI.java] build 23-May-2019 13:07:07 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/params/WsParamSetI.java] build 23-May-2019 13:07:07 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/params/simple/BooleanOption.java] build 23-May-2019 13:07:07 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/params/simple/IntegerParameter.java] build 23-May-2019 13:07:07 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/params/simple/Option.java] build 23-May-2019 13:07:07 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/params/simple/Parameter.java] build 23-May-2019 13:07:07 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/params/simple/StringChoiceParameter.java] build 23-May-2019 13:07:07 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/rest/AlignmentProcessor.java] build 23-May-2019 13:07:07 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/rest/HttpResultSet.java] build 23-May-2019 13:07:07 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/rest/InputType.java] build 23-May-2019 13:07:07 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/rest/NoValidInputDataException.java] build 23-May-2019 13:07:07 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/rest/RestClient.java] build 23-May-2019 13:07:07 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/rest/RestJob.java] build 23-May-2019 13:07:07 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/rest/RestJobThread.java] build 23-May-2019 13:07:07 [exec] 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build 23-May-2019 13:07:08 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/seqfetcher/DbSourceProxy.java] build 23-May-2019 13:07:08 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/seqfetcher/DbSourceProxyImpl.java] build 23-May-2019 13:07:08 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/seqfetcher/DbSourceProxyRoot.java] build 23-May-2019 13:07:08 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/sifts/MappingOutputPojo.java] build 23-May-2019 13:07:08 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/sifts/SiftsClient.java] build 23-May-2019 13:07:08 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/sifts/SiftsException.java] build 23-May-2019 13:07:08 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/sifts/SiftsSettings.java] build 23-May-2019 13:07:08 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/uimodel/AlignAnalysisUIText.java] build 23-May-2019 13:07:08 [exec] transpiling SourceFile[/jalview-js/src/jalview/ws/utils/UrlDownloadClient.java] build 23-May-2019 13:07:08 [exec] transpiling SourceFile[/jalview-js/src/jalview/xml/binding/embl/EntrySetType.java] build 23-May-2019 13:07:08 [exec] transpiling SourceFile[/jalview-js/src/jalview/xml/binding/embl/EntryType.java] build 23-May-2019 13:07:08 [exec] transpiling SourceFile[/jalview-js/src/jalview/xml/binding/embl/ObjectFactory.java] build 23-May-2019 13:07:08 [exec] >>>unspecified! build 23-May-2019 13:07:08 [exec] transpiling SourceFile[/jalview-js/src/jalview/xml/binding/embl/ROOT.java] build 23-May-2019 13:07:08 [exec] transpiling SourceFile[/jalview-js/src/jalview/xml/binding/embl/XrefType.java] build 23-May-2019 13:07:08 [exec] transpiling SourceFile[/jalview-js/src/jalview/xml/binding/jalview/AlcodonFrame.java] build 23-May-2019 13:07:08 [exec] transpiling SourceFile[/jalview-js/src/jalview/xml/binding/jalview/Annotation.java] build 23-May-2019 13:07:08 [exec] transpiling 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SourceFile[/jalview-js/src/vamsas/objects/simple/Result.java] build 23-May-2019 13:07:09 [exec] transpiling SourceFile[/jalview-js/src/vamsas/objects/simple/Result_Helper.java] build 23-May-2019 13:07:09 [exec] transpiling SourceFile[/jalview-js/src/vamsas/objects/simple/Secstructpred.java] build 23-May-2019 13:07:09 [exec] transpiling SourceFile[/jalview-js/src/vamsas/objects/simple/Secstructpred_Helper.java] build 23-May-2019 13:07:09 [exec] transpiling SourceFile[/jalview-js/src/vamsas/objects/simple/SeqSearchResult.java] build 23-May-2019 13:07:09 [exec] transpiling SourceFile[/jalview-js/src/vamsas/objects/simple/SeqSearchResult_Helper.java] build 23-May-2019 13:07:09 [exec] transpiling SourceFile[/jalview-js/src/vamsas/objects/simple/Sequence.java] build 23-May-2019 13:07:09 [exec] transpiling SourceFile[/jalview-js/src/vamsas/objects/simple/SequenceSet.java] build 23-May-2019 13:07:09 [exec] transpiling SourceFile[/jalview-js/src/vamsas/objects/simple/SequenceSet_Helper.java] build 23-May-2019 13:07:09 [exec] transpiling SourceFile[/jalview-js/src/vamsas/objects/simple/Sequence_Helper.java] build 23-May-2019 13:07:09 [exec] transpiling SourceFile[/jalview-js/src/vamsas/objects/simple/WsJobId.java] build 23-May-2019 13:07:09 [exec] transpiling SourceFile[/jalview-js/src/vamsas/objects/simple/WsJobId_Helper.java] build 23-May-2019 13:07:09 [exec] build finished /home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js build 23-May-2019 13:07:09 [exec] Build done build 23-May-2019 13:07:09 [exec] Invoking 'Faceted Project Validation Builder' on '/jalview-js'. build 23-May-2019 13:07:09 [exec] Validating faceted project... build 23-May-2019 13:07:10 [exec] Invoking 'Integrated External Tool Builder' on '/jalview-js'. build 23-May-2019 13:07:10 [exec] Running Jalview Release indices [Builder]... build 23-May-2019 13:07:10 [exec] Preparing launch delegate... build 23-May-2019 13:07:10 [exec] Performing pre-launch check... build 23-May-2019 13:07:10 [exec] Performing final launch validation... build 23-May-2019 13:07:10 [exec] Initializing source locator... build 23-May-2019 13:07:10 [exec] Launching delegate... build 23-May-2019 13:07:12 [exec] Eclipse: build 23-May-2019 13:07:12 [exec] An error has occurred. See the log file build 23-May-2019 13:07:12 [exec] /home/bamboo/buildtools/eclipse/eclipse-js-workspace/.metadata/.log. build 23-May-2019 13:07:12 [exec] Result: 13 build 23-May-2019 13:07:13 [exec] !SESSION 2019-05-23 13:06:04.959 ----------------------------------------------- build 23-May-2019 13:07:13 [exec] eclipse.buildId=4.8.0.I20180611-0500 build 23-May-2019 13:07:13 [exec] java.version=1.8.0_171 build 23-May-2019 13:07:13 [exec] java.vendor=Oracle Corporation build 23-May-2019 13:07:13 [exec] BootLoader constants: OS=linux, ARCH=x86_64, WS=gtk, NL=en_GB build 23-May-2019 13:07:13 [exec] Framework arguments: -product org.eclipse.epp.package.jee.product -application org.eclipse.jdt.apt.core.aptBuild build 23-May-2019 13:07:13 [exec] Command-line arguments: -os linux -ws gtk -arch x86_64 -product org.eclipse.epp.package.jee.product -clean -application org.eclipse.jdt.apt.core.aptBuild -data /home/bamboo/buildtools/eclipse/eclipse-js-workspace build 23-May-2019 13:07:13 [exec] build 23-May-2019 13:07:13 [exec] !ENTRY org.eclipse.core.resources 2 10035 2019-05-23 13:06:26.595 build 23-May-2019 13:07:13 [exec] !MESSAGE The workspace exited with unsaved changes in the previous session; refreshing workspace to recover changes. build 23-May-2019 13:07:13 [exec] build 23-May-2019 13:07:13 [exec] !ENTRY org.eclipse.egit.core 2 0 2019-05-23 13:06:39.575 build 23-May-2019 13:07:13 [exec] !MESSAGE Builtin LFS support not present/detected build 23-May-2019 13:07:13 [exec] !STACK 0 build 23-May-2019 13:07:13 [exec] java.lang.ClassNotFoundException: org.eclipse.jgit.lfs.BuiltinLFS cannot be found by org.eclipse.egit.core_5.0.0.201806131550-r build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:508) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:419) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:411) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:150) build 23-May-2019 13:07:13 [exec] at java.lang.ClassLoader.loadClass(ClassLoader.java:357) build 23-May-2019 13:07:13 [exec] at java.lang.Class.forName0(Native Method) build 23-May-2019 13:07:13 [exec] at java.lang.Class.forName(Class.java:264) build 23-May-2019 13:07:13 [exec] at org.eclipse.egit.core.Activator.registerBuiltinLFS(Activator.java:279) build 23-May-2019 13:07:13 [exec] at org.eclipse.egit.core.Activator.start(Activator.java:212) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:779) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:1) build 23-May-2019 13:07:13 [exec] at java.security.AccessController.doPrivileged(Native Method) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.startActivator(BundleContextImpl.java:772) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.start(BundleContextImpl.java:729) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle.startWorker0(EquinoxBundle.java:1002) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle$EquinoxModule.startWorker(EquinoxBundle.java:354) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.container.Module.doStart(Module.java:581) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.container.Module.start(Module.java:449) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.framework.util.SecureAction.start(SecureAction.java:468) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.hooks.EclipseLazyStarter.postFindLocalClass(EclipseLazyStarter.java:114) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClass(ClasspathManager.java:505) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.findLocalClass(ModuleClassLoader.java:328) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findLocalClass(BundleLoader.java:392) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:470) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:419) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:411) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:150) build 23-May-2019 13:07:13 [exec] at java.lang.ClassLoader.loadClass(ClassLoader.java:357) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle.loadClass(EquinoxBundle.java:609) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.registry.osgi.RegistryStrategyOSGI.createExecutableExtension(RegistryStrategyOSGI.java:177) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.registry.ExtensionRegistry.createExecutableExtension(ExtensionRegistry.java:931) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.registry.ConfigurationElement.createExecutableExtension(ConfigurationElement.java:243) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.registry.ConfigurationElementHandle.createExecutableExtension(ConfigurationElementHandle.java:60) build 23-May-2019 13:07:13 [exec] at org.eclipse.team.core.RepositoryProvider.newProvider(RepositoryProvider.java:707) build 23-May-2019 13:07:13 [exec] at org.eclipse.team.core.RepositoryProvider.mapNewProvider(RepositoryProvider.java:162) build 23-May-2019 13:07:13 [exec] at org.eclipse.team.core.RepositoryProvider.mapExistingProvider(RepositoryProvider.java:233) build 23-May-2019 13:07:13 [exec] at org.eclipse.team.core.RepositoryProvider.getProvider(RepositoryProvider.java:510) build 23-May-2019 13:07:13 [exec] at org.eclipse.team.internal.core.TeamHookDispatcher.getProvider(TeamHookDispatcher.java:89) build 23-May-2019 13:07:13 [exec] at org.eclipse.team.internal.core.TeamHookDispatcher.getRuleFactory(TeamHookDispatcher.java:95) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Rules.factoryFor(Rules.java:98) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Rules.refreshRule(Rules.java:175) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Resource.refreshLocal(Resource.java:1537) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.refresh.RefreshJob.runInWorkspace(RefreshJob.java:163) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.InternalWorkspaceJob.run(InternalWorkspaceJob.java:39) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.jobs.Worker.run(Worker.java:60) build 23-May-2019 13:07:13 [exec] build 23-May-2019 13:07:13 [exec] !ENTRY org.eclipse.jdt.core 4 4 2019-05-23 13:06:51.868 build 23-May-2019 13:07:13 [exec] !MESSAGE File not found: '/jalview-js/src/jalview/api/AlignFrameI.java' build 23-May-2019 13:07:13 [exec] !STACK 1 build 23-May-2019 13:07:13 [exec] org.eclipse.core.internal.resources.ResourceException(/jalview-js/src/jalview/api/AlignFrameI.java)[368]: java.lang.Exception: File not found: /home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/AlignFrameI.java. build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.ResourceException.provideStackTrace(ResourceException.java:39) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.ResourceException.(ResourceException.java:35) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.localstore.FileSystemResourceManager.read(FileSystemResourceManager.java:830) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.File.getContents(File.java:277) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.internal.core.util.Util.getResourceContentsAsCharArray(Util.java:1204) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.internal.core.CompilationUnit.getContents(CompilationUnit.java:679) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.core.dom.ASTParser.internalCreateAST(ASTParser.java:1135) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.core.dom.ASTParser.createAST(ASTParser.java:823) build 23-May-2019 13:07:13 [exec] at net.sf.j2s.core.Java2ScriptCompiler.compileToJavaScript(Java2ScriptCompiler.java:253) build 23-May-2019 13:07:13 [exec] at net.sf.j2s.core.Java2ScriptCompilationParticipant.buildFinished(Java2ScriptCompilationParticipant.java:117) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.internal.core.builder.JavaBuilder.build(JavaBuilder.java:237) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$2.run(BuildManager.java:795) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:216) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:259) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$1.run(BuildManager.java:312) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:315) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuildLoop(BuildManager.java:367) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.build(BuildManager.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.buildInternal(Workspace.java:501) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.build(Workspace.java:401) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.apt.core.build.AptBuilder.start(AptBuilder.java:56) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) build 23-May-2019 13:07:13 [exec] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) build 23-May-2019 13:07:13 [exec] at java.lang.reflect.Method.invoke(Method.java:498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:656) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.basicRun(Main.java:592) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.run(Main.java:1498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.main(Main.java:1471) build 23-May-2019 13:07:13 [exec] !SUBENTRY 1 org.eclipse.core.resources 4 368 2019-05-23 13:06:51.869 build 23-May-2019 13:07:13 [exec] !MESSAGE File not found: /home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/AlignFrameI.java. build 23-May-2019 13:07:13 [exec] !STACK 0 build 23-May-2019 13:07:13 [exec] java.lang.Exception: File not found: /home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/AlignFrameI.java. build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.ResourceException.provideStackTrace(ResourceException.java:39) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.ResourceException.(ResourceException.java:35) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.localstore.FileSystemResourceManager.read(FileSystemResourceManager.java:830) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.File.getContents(File.java:277) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.internal.core.util.Util.getResourceContentsAsCharArray(Util.java:1204) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.internal.core.CompilationUnit.getContents(CompilationUnit.java:679) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.core.dom.ASTParser.internalCreateAST(ASTParser.java:1135) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.core.dom.ASTParser.createAST(ASTParser.java:823) build 23-May-2019 13:07:13 [exec] at net.sf.j2s.core.Java2ScriptCompiler.compileToJavaScript(Java2ScriptCompiler.java:253) build 23-May-2019 13:07:13 [exec] at net.sf.j2s.core.Java2ScriptCompilationParticipant.buildFinished(Java2ScriptCompilationParticipant.java:117) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.internal.core.builder.JavaBuilder.build(JavaBuilder.java:237) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$2.run(BuildManager.java:795) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:216) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:259) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$1.run(BuildManager.java:312) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:315) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuildLoop(BuildManager.java:367) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.build(BuildManager.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.buildInternal(Workspace.java:501) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.build(Workspace.java:401) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.apt.core.build.AptBuilder.start(AptBuilder.java:56) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) build 23-May-2019 13:07:13 [exec] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) build 23-May-2019 13:07:13 [exec] at java.lang.reflect.Method.invoke(Method.java:498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:656) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.basicRun(Main.java:592) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.run(Main.java:1498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.main(Main.java:1471) build 23-May-2019 13:07:13 [exec] build 23-May-2019 13:07:13 [exec] !ENTRY org.eclipse.jdt.core 4 4 2019-05-23 13:06:51.953 build 23-May-2019 13:07:13 [exec] !MESSAGE File not found: '/jalview-js/src/jalview/api/JalviewApp.java' build 23-May-2019 13:07:13 [exec] !STACK 1 build 23-May-2019 13:07:13 [exec] org.eclipse.core.internal.resources.ResourceException(/jalview-js/src/jalview/api/JalviewApp.java)[368]: java.lang.Exception: File not found: /home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/JalviewApp.java. build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.ResourceException.provideStackTrace(ResourceException.java:39) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.ResourceException.(ResourceException.java:35) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.localstore.FileSystemResourceManager.read(FileSystemResourceManager.java:830) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.File.getContents(File.java:277) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.internal.core.util.Util.getResourceContentsAsCharArray(Util.java:1204) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.internal.core.CompilationUnit.getContents(CompilationUnit.java:679) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.core.dom.ASTParser.internalCreateAST(ASTParser.java:1135) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.core.dom.ASTParser.createAST(ASTParser.java:823) build 23-May-2019 13:07:13 [exec] at net.sf.j2s.core.Java2ScriptCompiler.compileToJavaScript(Java2ScriptCompiler.java:253) build 23-May-2019 13:07:13 [exec] at net.sf.j2s.core.Java2ScriptCompilationParticipant.buildFinished(Java2ScriptCompilationParticipant.java:117) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.internal.core.builder.JavaBuilder.build(JavaBuilder.java:237) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$2.run(BuildManager.java:795) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:216) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:259) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$1.run(BuildManager.java:312) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:315) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuildLoop(BuildManager.java:367) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.build(BuildManager.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.buildInternal(Workspace.java:501) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.build(Workspace.java:401) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.apt.core.build.AptBuilder.start(AptBuilder.java:56) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) build 23-May-2019 13:07:13 [exec] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) build 23-May-2019 13:07:13 [exec] at java.lang.reflect.Method.invoke(Method.java:498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:656) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.basicRun(Main.java:592) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.run(Main.java:1498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.main(Main.java:1471) build 23-May-2019 13:07:13 [exec] !SUBENTRY 1 org.eclipse.core.resources 4 368 2019-05-23 13:06:51.953 build 23-May-2019 13:07:13 [exec] !MESSAGE File not found: /home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/JalviewApp.java. build 23-May-2019 13:07:13 [exec] !STACK 0 build 23-May-2019 13:07:13 [exec] java.lang.Exception: File not found: /home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/JalviewApp.java. build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.ResourceException.provideStackTrace(ResourceException.java:39) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.ResourceException.(ResourceException.java:35) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.localstore.FileSystemResourceManager.read(FileSystemResourceManager.java:830) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.File.getContents(File.java:277) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.internal.core.util.Util.getResourceContentsAsCharArray(Util.java:1204) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.internal.core.CompilationUnit.getContents(CompilationUnit.java:679) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.core.dom.ASTParser.internalCreateAST(ASTParser.java:1135) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.core.dom.ASTParser.createAST(ASTParser.java:823) build 23-May-2019 13:07:13 [exec] at net.sf.j2s.core.Java2ScriptCompiler.compileToJavaScript(Java2ScriptCompiler.java:253) build 23-May-2019 13:07:13 [exec] at net.sf.j2s.core.Java2ScriptCompilationParticipant.buildFinished(Java2ScriptCompilationParticipant.java:117) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.internal.core.builder.JavaBuilder.build(JavaBuilder.java:237) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$2.run(BuildManager.java:795) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:216) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:259) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$1.run(BuildManager.java:312) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:315) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuildLoop(BuildManager.java:367) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.build(BuildManager.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.buildInternal(Workspace.java:501) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.build(Workspace.java:401) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.apt.core.build.AptBuilder.start(AptBuilder.java:56) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) build 23-May-2019 13:07:13 [exec] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) build 23-May-2019 13:07:13 [exec] at java.lang.reflect.Method.invoke(Method.java:498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:656) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.basicRun(Main.java:592) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.run(Main.java:1498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.main(Main.java:1471) build 23-May-2019 13:07:13 [exec] build 23-May-2019 13:07:13 [exec] !ENTRY org.eclipse.jdt.core 4 4 2019-05-23 13:06:54.740 build 23-May-2019 13:07:13 [exec] !MESSAGE File not found: '/jalview-js/src/jalview/bin/AppletParams.java' build 23-May-2019 13:07:13 [exec] !STACK 1 build 23-May-2019 13:07:13 [exec] org.eclipse.core.internal.resources.ResourceException(/jalview-js/src/jalview/bin/AppletParams.java)[368]: java.lang.Exception: File not found: /home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/bin/AppletParams.java. build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.ResourceException.provideStackTrace(ResourceException.java:39) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.ResourceException.(ResourceException.java:35) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.localstore.FileSystemResourceManager.read(FileSystemResourceManager.java:830) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.File.getContents(File.java:277) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.internal.core.util.Util.getResourceContentsAsCharArray(Util.java:1204) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.internal.core.CompilationUnit.getContents(CompilationUnit.java:679) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.core.dom.ASTParser.internalCreateAST(ASTParser.java:1135) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.core.dom.ASTParser.createAST(ASTParser.java:823) build 23-May-2019 13:07:13 [exec] at net.sf.j2s.core.Java2ScriptCompiler.compileToJavaScript(Java2ScriptCompiler.java:253) build 23-May-2019 13:07:13 [exec] at net.sf.j2s.core.Java2ScriptCompilationParticipant.buildFinished(Java2ScriptCompilationParticipant.java:117) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.internal.core.builder.JavaBuilder.build(JavaBuilder.java:237) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$2.run(BuildManager.java:795) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:216) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:259) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$1.run(BuildManager.java:312) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:315) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuildLoop(BuildManager.java:367) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.build(BuildManager.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.buildInternal(Workspace.java:501) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.build(Workspace.java:401) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.apt.core.build.AptBuilder.start(AptBuilder.java:56) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) build 23-May-2019 13:07:13 [exec] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) build 23-May-2019 13:07:13 [exec] at java.lang.reflect.Method.invoke(Method.java:498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:656) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.basicRun(Main.java:592) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.run(Main.java:1498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.main(Main.java:1471) build 23-May-2019 13:07:13 [exec] !SUBENTRY 1 org.eclipse.core.resources 4 368 2019-05-23 13:06:54.740 build 23-May-2019 13:07:13 [exec] !MESSAGE File not found: /home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/bin/AppletParams.java. build 23-May-2019 13:07:13 [exec] !STACK 0 build 23-May-2019 13:07:13 [exec] java.lang.Exception: File not found: /home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/bin/AppletParams.java. build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.ResourceException.provideStackTrace(ResourceException.java:39) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.ResourceException.(ResourceException.java:35) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.localstore.FileSystemResourceManager.read(FileSystemResourceManager.java:830) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.File.getContents(File.java:277) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.internal.core.util.Util.getResourceContentsAsCharArray(Util.java:1204) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.internal.core.CompilationUnit.getContents(CompilationUnit.java:679) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.core.dom.ASTParser.internalCreateAST(ASTParser.java:1135) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.core.dom.ASTParser.createAST(ASTParser.java:823) build 23-May-2019 13:07:13 [exec] at net.sf.j2s.core.Java2ScriptCompiler.compileToJavaScript(Java2ScriptCompiler.java:253) build 23-May-2019 13:07:13 [exec] at net.sf.j2s.core.Java2ScriptCompilationParticipant.buildFinished(Java2ScriptCompilationParticipant.java:117) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.internal.core.builder.JavaBuilder.build(JavaBuilder.java:237) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$2.run(BuildManager.java:795) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:216) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:259) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$1.run(BuildManager.java:312) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:315) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuildLoop(BuildManager.java:367) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.build(BuildManager.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.buildInternal(Workspace.java:501) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.build(Workspace.java:401) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.apt.core.build.AptBuilder.start(AptBuilder.java:56) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) build 23-May-2019 13:07:13 [exec] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) build 23-May-2019 13:07:13 [exec] at java.lang.reflect.Method.invoke(Method.java:498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:656) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.basicRun(Main.java:592) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.run(Main.java:1498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.main(Main.java:1471) build 23-May-2019 13:07:13 [exec] build 23-May-2019 13:07:13 [exec] !ENTRY org.eclipse.jdt.core 4 4 2019-05-23 13:06:54.742 build 23-May-2019 13:07:13 [exec] !MESSAGE File not found: '/jalview-js/src/jalview/bin/ApplicationSingletonProvider.java' build 23-May-2019 13:07:13 [exec] !STACK 1 build 23-May-2019 13:07:13 [exec] org.eclipse.core.internal.resources.ResourceException(/jalview-js/src/jalview/bin/ApplicationSingletonProvider.java)[368]: java.lang.Exception: File not found: /home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/bin/ApplicationSingletonProvider.java. build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.ResourceException.provideStackTrace(ResourceException.java:39) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.ResourceException.(ResourceException.java:35) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.localstore.FileSystemResourceManager.read(FileSystemResourceManager.java:830) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.File.getContents(File.java:277) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.internal.core.util.Util.getResourceContentsAsCharArray(Util.java:1204) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.internal.core.CompilationUnit.getContents(CompilationUnit.java:679) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.core.dom.ASTParser.internalCreateAST(ASTParser.java:1135) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.core.dom.ASTParser.createAST(ASTParser.java:823) build 23-May-2019 13:07:13 [exec] at net.sf.j2s.core.Java2ScriptCompiler.compileToJavaScript(Java2ScriptCompiler.java:253) build 23-May-2019 13:07:13 [exec] at net.sf.j2s.core.Java2ScriptCompilationParticipant.buildFinished(Java2ScriptCompilationParticipant.java:117) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.internal.core.builder.JavaBuilder.build(JavaBuilder.java:237) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$2.run(BuildManager.java:795) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:216) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:259) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$1.run(BuildManager.java:312) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:315) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuildLoop(BuildManager.java:367) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.build(BuildManager.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.buildInternal(Workspace.java:501) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.build(Workspace.java:401) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.apt.core.build.AptBuilder.start(AptBuilder.java:56) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) build 23-May-2019 13:07:13 [exec] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) build 23-May-2019 13:07:13 [exec] at java.lang.reflect.Method.invoke(Method.java:498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:656) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.basicRun(Main.java:592) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.run(Main.java:1498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.main(Main.java:1471) build 23-May-2019 13:07:13 [exec] !SUBENTRY 1 org.eclipse.core.resources 4 368 2019-05-23 13:06:54.742 build 23-May-2019 13:07:13 [exec] !MESSAGE File not found: /home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/bin/ApplicationSingletonProvider.java. build 23-May-2019 13:07:13 [exec] !STACK 0 build 23-May-2019 13:07:13 [exec] java.lang.Exception: File not found: /home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/bin/ApplicationSingletonProvider.java. build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.ResourceException.provideStackTrace(ResourceException.java:39) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.ResourceException.(ResourceException.java:35) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.localstore.FileSystemResourceManager.read(FileSystemResourceManager.java:830) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.File.getContents(File.java:277) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.internal.core.util.Util.getResourceContentsAsCharArray(Util.java:1204) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.internal.core.CompilationUnit.getContents(CompilationUnit.java:679) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.core.dom.ASTParser.internalCreateAST(ASTParser.java:1135) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.core.dom.ASTParser.createAST(ASTParser.java:823) build 23-May-2019 13:07:13 [exec] at net.sf.j2s.core.Java2ScriptCompiler.compileToJavaScript(Java2ScriptCompiler.java:253) build 23-May-2019 13:07:13 [exec] at net.sf.j2s.core.Java2ScriptCompilationParticipant.buildFinished(Java2ScriptCompilationParticipant.java:117) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.internal.core.builder.JavaBuilder.build(JavaBuilder.java:237) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$2.run(BuildManager.java:795) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:216) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:259) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$1.run(BuildManager.java:312) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:315) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuildLoop(BuildManager.java:367) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.build(BuildManager.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.buildInternal(Workspace.java:501) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.build(Workspace.java:401) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.apt.core.build.AptBuilder.start(AptBuilder.java:56) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) build 23-May-2019 13:07:13 [exec] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) build 23-May-2019 13:07:13 [exec] at java.lang.reflect.Method.invoke(Method.java:498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:656) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.basicRun(Main.java:592) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.run(Main.java:1498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.main(Main.java:1471) build 23-May-2019 13:07:13 [exec] build 23-May-2019 13:07:13 [exec] !ENTRY org.eclipse.jdt.core 4 4 2019-05-23 13:06:55.110 build 23-May-2019 13:07:13 [exec] !MESSAGE File not found: '/jalview-js/src/jalview/bin/JalviewAppLoader.java' build 23-May-2019 13:07:13 [exec] !STACK 1 build 23-May-2019 13:07:13 [exec] org.eclipse.core.internal.resources.ResourceException(/jalview-js/src/jalview/bin/JalviewAppLoader.java)[368]: java.lang.Exception: File not found: /home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/bin/JalviewAppLoader.java. build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.ResourceException.provideStackTrace(ResourceException.java:39) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.ResourceException.(ResourceException.java:35) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.localstore.FileSystemResourceManager.read(FileSystemResourceManager.java:830) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.File.getContents(File.java:277) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.internal.core.util.Util.getResourceContentsAsCharArray(Util.java:1204) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.internal.core.CompilationUnit.getContents(CompilationUnit.java:679) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.core.dom.ASTParser.internalCreateAST(ASTParser.java:1135) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.core.dom.ASTParser.createAST(ASTParser.java:823) build 23-May-2019 13:07:13 [exec] at net.sf.j2s.core.Java2ScriptCompiler.compileToJavaScript(Java2ScriptCompiler.java:253) build 23-May-2019 13:07:13 [exec] at net.sf.j2s.core.Java2ScriptCompilationParticipant.buildFinished(Java2ScriptCompilationParticipant.java:117) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.internal.core.builder.JavaBuilder.build(JavaBuilder.java:237) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$2.run(BuildManager.java:795) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:216) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:259) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$1.run(BuildManager.java:312) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:315) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuildLoop(BuildManager.java:367) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.build(BuildManager.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.buildInternal(Workspace.java:501) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.build(Workspace.java:401) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.apt.core.build.AptBuilder.start(AptBuilder.java:56) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) build 23-May-2019 13:07:13 [exec] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) build 23-May-2019 13:07:13 [exec] at java.lang.reflect.Method.invoke(Method.java:498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:656) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.basicRun(Main.java:592) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.run(Main.java:1498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.main(Main.java:1471) build 23-May-2019 13:07:13 [exec] !SUBENTRY 1 org.eclipse.core.resources 4 368 2019-05-23 13:06:55.111 build 23-May-2019 13:07:13 [exec] !MESSAGE File not found: /home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/bin/JalviewAppLoader.java. build 23-May-2019 13:07:13 [exec] !STACK 0 build 23-May-2019 13:07:13 [exec] java.lang.Exception: File not found: /home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/bin/JalviewAppLoader.java. build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.ResourceException.provideStackTrace(ResourceException.java:39) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.ResourceException.(ResourceException.java:35) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.localstore.FileSystemResourceManager.read(FileSystemResourceManager.java:830) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.File.getContents(File.java:277) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.internal.core.util.Util.getResourceContentsAsCharArray(Util.java:1204) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.internal.core.CompilationUnit.getContents(CompilationUnit.java:679) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.core.dom.ASTParser.internalCreateAST(ASTParser.java:1135) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.core.dom.ASTParser.createAST(ASTParser.java:823) build 23-May-2019 13:07:13 [exec] at net.sf.j2s.core.Java2ScriptCompiler.compileToJavaScript(Java2ScriptCompiler.java:253) build 23-May-2019 13:07:13 [exec] at net.sf.j2s.core.Java2ScriptCompilationParticipant.buildFinished(Java2ScriptCompilationParticipant.java:117) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.internal.core.builder.JavaBuilder.build(JavaBuilder.java:237) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$2.run(BuildManager.java:795) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:216) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:259) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$1.run(BuildManager.java:312) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:315) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuildLoop(BuildManager.java:367) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.build(BuildManager.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.buildInternal(Workspace.java:501) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.build(Workspace.java:401) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.apt.core.build.AptBuilder.start(AptBuilder.java:56) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) build 23-May-2019 13:07:13 [exec] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) build 23-May-2019 13:07:13 [exec] at java.lang.reflect.Method.invoke(Method.java:498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:656) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.basicRun(Main.java:592) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.run(Main.java:1498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.main(Main.java:1471) build 23-May-2019 13:07:13 [exec] build 23-May-2019 13:07:13 [exec] !ENTRY org.eclipse.jdt.core 4 4 2019-05-23 13:07:08.028 build 23-May-2019 13:07:13 [exec] !MESSAGE File not found: '/jalview-js/src/jalview/ws/seqfetcher/DbSourceProxyRoot.java' build 23-May-2019 13:07:13 [exec] !STACK 1 build 23-May-2019 13:07:13 [exec] org.eclipse.core.internal.resources.ResourceException(/jalview-js/src/jalview/ws/seqfetcher/DbSourceProxyRoot.java)[368]: java.lang.Exception: File not found: /home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/seqfetcher/DbSourceProxyRoot.java. build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.ResourceException.provideStackTrace(ResourceException.java:39) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.ResourceException.(ResourceException.java:35) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.localstore.FileSystemResourceManager.read(FileSystemResourceManager.java:830) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.File.getContents(File.java:277) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.internal.core.util.Util.getResourceContentsAsCharArray(Util.java:1204) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.internal.core.CompilationUnit.getContents(CompilationUnit.java:679) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.core.dom.ASTParser.internalCreateAST(ASTParser.java:1135) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.core.dom.ASTParser.createAST(ASTParser.java:823) build 23-May-2019 13:07:13 [exec] at net.sf.j2s.core.Java2ScriptCompiler.compileToJavaScript(Java2ScriptCompiler.java:253) build 23-May-2019 13:07:13 [exec] at net.sf.j2s.core.Java2ScriptCompilationParticipant.buildFinished(Java2ScriptCompilationParticipant.java:117) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.internal.core.builder.JavaBuilder.build(JavaBuilder.java:237) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$2.run(BuildManager.java:795) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:216) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:259) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$1.run(BuildManager.java:312) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:315) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuildLoop(BuildManager.java:367) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.build(BuildManager.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.buildInternal(Workspace.java:501) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.build(Workspace.java:401) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.apt.core.build.AptBuilder.start(AptBuilder.java:56) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) build 23-May-2019 13:07:13 [exec] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) build 23-May-2019 13:07:13 [exec] at java.lang.reflect.Method.invoke(Method.java:498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:656) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.basicRun(Main.java:592) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.run(Main.java:1498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.main(Main.java:1471) build 23-May-2019 13:07:13 [exec] !SUBENTRY 1 org.eclipse.core.resources 4 368 2019-05-23 13:07:08.028 build 23-May-2019 13:07:13 [exec] !MESSAGE File not found: /home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/seqfetcher/DbSourceProxyRoot.java. build 23-May-2019 13:07:13 [exec] !STACK 0 build 23-May-2019 13:07:13 [exec] java.lang.Exception: File not found: /home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/seqfetcher/DbSourceProxyRoot.java. build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.ResourceException.provideStackTrace(ResourceException.java:39) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.ResourceException.(ResourceException.java:35) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.localstore.FileSystemResourceManager.read(FileSystemResourceManager.java:830) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.File.getContents(File.java:277) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.internal.core.util.Util.getResourceContentsAsCharArray(Util.java:1204) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.internal.core.CompilationUnit.getContents(CompilationUnit.java:679) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.core.dom.ASTParser.internalCreateAST(ASTParser.java:1135) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.core.dom.ASTParser.createAST(ASTParser.java:823) build 23-May-2019 13:07:13 [exec] at net.sf.j2s.core.Java2ScriptCompiler.compileToJavaScript(Java2ScriptCompiler.java:253) build 23-May-2019 13:07:13 [exec] at net.sf.j2s.core.Java2ScriptCompilationParticipant.buildFinished(Java2ScriptCompilationParticipant.java:117) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.internal.core.builder.JavaBuilder.build(JavaBuilder.java:237) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$2.run(BuildManager.java:795) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:216) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:259) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$1.run(BuildManager.java:312) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:315) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuildLoop(BuildManager.java:367) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.build(BuildManager.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.buildInternal(Workspace.java:501) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.build(Workspace.java:401) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.apt.core.build.AptBuilder.start(AptBuilder.java:56) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) build 23-May-2019 13:07:13 [exec] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) build 23-May-2019 13:07:13 [exec] at java.lang.reflect.Method.invoke(Method.java:498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:656) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.basicRun(Main.java:592) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.run(Main.java:1498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.main(Main.java:1471) build 23-May-2019 13:07:13 [exec] build 23-May-2019 13:07:13 [exec] !ENTRY org.eclipse.osgi 4 0 2019-05-23 13:07:10.419 build 23-May-2019 13:07:13 [exec] !MESSAGE An error occurred while automatically activating bundle org.eclipse.ui.externaltools (786). build 23-May-2019 13:07:13 [exec] !STACK 0 build 23-May-2019 13:07:13 [exec] org.osgi.framework.BundleException: Exception in org.eclipse.ui.externaltools.internal.model.ExternalToolsPlugin.start() of bundle org.eclipse.ui.externaltools. build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.startActivator(BundleContextImpl.java:800) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.start(BundleContextImpl.java:729) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle.startWorker0(EquinoxBundle.java:1002) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle$EquinoxModule.startWorker(EquinoxBundle.java:354) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.container.Module.doStart(Module.java:581) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.container.Module.start(Module.java:449) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.framework.util.SecureAction.start(SecureAction.java:468) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.hooks.EclipseLazyStarter.postFindLocalClass(EclipseLazyStarter.java:114) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClass(ClasspathManager.java:505) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.findLocalClass(ModuleClassLoader.java:328) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findLocalClass(BundleLoader.java:392) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:470) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:419) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:411) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:150) build 23-May-2019 13:07:13 [exec] at java.lang.ClassLoader.loadClass(ClassLoader.java:357) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle.loadClass(EquinoxBundle.java:609) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.registry.osgi.RegistryStrategyOSGI.createExecutableExtension(RegistryStrategyOSGI.java:177) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.registry.ExtensionRegistry.createExecutableExtension(ExtensionRegistry.java:931) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.registry.ConfigurationElement.createExecutableExtension(ConfigurationElement.java:243) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.registry.ConfigurationElementHandle.createExecutableExtension(ConfigurationElementHandle.java:60) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.DynamicVariable.getValue(DynamicVariable.java:48) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.resolve(StringSubstitutionEngine.java:269) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.substitute(StringSubstitutionEngine.java:192) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.performStringSubstitution(StringSubstitutionEngine.java:87) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.StringVariableManager.performStringSubstitution(StringVariableManager.java:592) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.StringVariableManager.performStringSubstitution(StringVariableManager.java:358) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.externaltools.internal.launchConfigurations.ExternalToolsCoreUtil.getLocation(ExternalToolsCoreUtil.java:73) build 23-May-2019 13:07:13 [exec] at org.eclipse.ant.internal.launching.launchConfigurations.AntLaunchDelegate.launch(AntLaunchDelegate.java:161) build 23-May-2019 13:07:13 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:859) build 23-May-2019 13:07:13 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:717) build 23-May-2019 13:07:13 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:712) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.launchBuild(ExternalToolBuilder.java:183) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.doBuildBasedOnScope(ExternalToolBuilder.java:171) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.build(ExternalToolBuilder.java:90) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$2.run(BuildManager.java:795) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:216) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:259) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$1.run(BuildManager.java:312) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:315) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuildLoop(BuildManager.java:367) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.build(BuildManager.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.buildInternal(Workspace.java:501) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.build(Workspace.java:401) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.apt.core.build.AptBuilder.start(AptBuilder.java:56) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) build 23-May-2019 13:07:13 [exec] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) build 23-May-2019 13:07:13 [exec] at java.lang.reflect.Method.invoke(Method.java:498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:656) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.basicRun(Main.java:592) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.run(Main.java:1498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.main(Main.java:1471) build 23-May-2019 13:07:13 [exec] Caused by: java.lang.IllegalStateException: Workbench has not been created yet. build 23-May-2019 13:07:13 [exec] at org.eclipse.ui.PlatformUI.getWorkbench(PlatformUI.java:93) build 23-May-2019 13:07:13 [exec] at org.eclipse.ui.externaltools.internal.model.ExternalToolsPlugin.start(ExternalToolsPlugin.java:254) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:779) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:1) build 23-May-2019 13:07:13 [exec] at java.security.AccessController.doPrivileged(Native Method) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.startActivator(BundleContextImpl.java:772) build 23-May-2019 13:07:13 [exec] ... 59 more build 23-May-2019 13:07:13 [exec] Root exception: build 23-May-2019 13:07:13 [exec] java.lang.IllegalStateException: Workbench has not been created yet. build 23-May-2019 13:07:13 [exec] at org.eclipse.ui.PlatformUI.getWorkbench(PlatformUI.java:93) build 23-May-2019 13:07:13 [exec] at org.eclipse.ui.externaltools.internal.model.ExternalToolsPlugin.start(ExternalToolsPlugin.java:254) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:779) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:1) build 23-May-2019 13:07:13 [exec] at java.security.AccessController.doPrivileged(Native Method) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.startActivator(BundleContextImpl.java:772) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.start(BundleContextImpl.java:729) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle.startWorker0(EquinoxBundle.java:1002) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle$EquinoxModule.startWorker(EquinoxBundle.java:354) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.container.Module.doStart(Module.java:581) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.container.Module.start(Module.java:449) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.framework.util.SecureAction.start(SecureAction.java:468) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.hooks.EclipseLazyStarter.postFindLocalClass(EclipseLazyStarter.java:114) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClass(ClasspathManager.java:505) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.findLocalClass(ModuleClassLoader.java:328) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findLocalClass(BundleLoader.java:392) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:470) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:419) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:411) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:150) build 23-May-2019 13:07:13 [exec] at java.lang.ClassLoader.loadClass(ClassLoader.java:357) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle.loadClass(EquinoxBundle.java:609) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.registry.osgi.RegistryStrategyOSGI.createExecutableExtension(RegistryStrategyOSGI.java:177) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.registry.ExtensionRegistry.createExecutableExtension(ExtensionRegistry.java:931) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.registry.ConfigurationElement.createExecutableExtension(ConfigurationElement.java:243) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.registry.ConfigurationElementHandle.createExecutableExtension(ConfigurationElementHandle.java:60) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.DynamicVariable.getValue(DynamicVariable.java:48) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.resolve(StringSubstitutionEngine.java:269) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.substitute(StringSubstitutionEngine.java:192) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.performStringSubstitution(StringSubstitutionEngine.java:87) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.StringVariableManager.performStringSubstitution(StringVariableManager.java:592) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.StringVariableManager.performStringSubstitution(StringVariableManager.java:358) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.externaltools.internal.launchConfigurations.ExternalToolsCoreUtil.getLocation(ExternalToolsCoreUtil.java:73) build 23-May-2019 13:07:13 [exec] at org.eclipse.ant.internal.launching.launchConfigurations.AntLaunchDelegate.launch(AntLaunchDelegate.java:161) build 23-May-2019 13:07:13 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:859) build 23-May-2019 13:07:13 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:717) build 23-May-2019 13:07:13 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:712) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.launchBuild(ExternalToolBuilder.java:183) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.doBuildBasedOnScope(ExternalToolBuilder.java:171) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.build(ExternalToolBuilder.java:90) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$2.run(BuildManager.java:795) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:216) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:259) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$1.run(BuildManager.java:312) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:315) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuildLoop(BuildManager.java:367) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.build(BuildManager.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.buildInternal(Workspace.java:501) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.build(Workspace.java:401) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.apt.core.build.AptBuilder.start(AptBuilder.java:56) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) build 23-May-2019 13:07:13 [exec] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) build 23-May-2019 13:07:13 [exec] at java.lang.reflect.Method.invoke(Method.java:498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:656) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.basicRun(Main.java:592) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.run(Main.java:1498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.main(Main.java:1471) build 23-May-2019 13:07:13 [exec] build 23-May-2019 13:07:13 [exec] !ENTRY org.eclipse.core.resources 4 2 2019-05-23 13:07:10.421 build 23-May-2019 13:07:13 [exec] !MESSAGE Problems occurred when invoking code from plug-in: "org.eclipse.core.resources". build 23-May-2019 13:07:13 [exec] !STACK 1 build 23-May-2019 13:07:13 [exec] org.eclipse.core.runtime.CoreException: Plug-in org.eclipse.ui.externaltools was unable to load class org.eclipse.ui.externaltools.internal.variables.BuildProjectResolver. build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.registry.osgi.RegistryStrategyOSGI.throwException(RegistryStrategyOSGI.java:197) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.registry.osgi.RegistryStrategyOSGI.createExecutableExtension(RegistryStrategyOSGI.java:179) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.registry.ExtensionRegistry.createExecutableExtension(ExtensionRegistry.java:931) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.registry.ConfigurationElement.createExecutableExtension(ConfigurationElement.java:243) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.registry.ConfigurationElementHandle.createExecutableExtension(ConfigurationElementHandle.java:60) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.DynamicVariable.getValue(DynamicVariable.java:48) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.resolve(StringSubstitutionEngine.java:269) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.substitute(StringSubstitutionEngine.java:192) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.performStringSubstitution(StringSubstitutionEngine.java:87) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.StringVariableManager.performStringSubstitution(StringVariableManager.java:592) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.StringVariableManager.performStringSubstitution(StringVariableManager.java:358) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.externaltools.internal.launchConfigurations.ExternalToolsCoreUtil.getLocation(ExternalToolsCoreUtil.java:73) build 23-May-2019 13:07:13 [exec] at org.eclipse.ant.internal.launching.launchConfigurations.AntLaunchDelegate.launch(AntLaunchDelegate.java:161) build 23-May-2019 13:07:13 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:859) build 23-May-2019 13:07:13 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:717) build 23-May-2019 13:07:13 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:712) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.launchBuild(ExternalToolBuilder.java:183) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.doBuildBasedOnScope(ExternalToolBuilder.java:171) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.build(ExternalToolBuilder.java:90) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$2.run(BuildManager.java:795) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:216) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:259) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$1.run(BuildManager.java:312) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:315) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuildLoop(BuildManager.java:367) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.build(BuildManager.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.buildInternal(Workspace.java:501) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.build(Workspace.java:401) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.apt.core.build.AptBuilder.start(AptBuilder.java:56) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) build 23-May-2019 13:07:13 [exec] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) build 23-May-2019 13:07:13 [exec] at java.lang.reflect.Method.invoke(Method.java:498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:656) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.basicRun(Main.java:592) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.run(Main.java:1498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.main(Main.java:1471) build 23-May-2019 13:07:13 [exec] Caused by: java.lang.ClassNotFoundException: An error occurred while automatically activating bundle org.eclipse.ui.externaltools (786). build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.hooks.EclipseLazyStarter.postFindLocalClass(EclipseLazyStarter.java:123) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClass(ClasspathManager.java:505) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.findLocalClass(ModuleClassLoader.java:328) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findLocalClass(BundleLoader.java:392) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:470) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:419) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:411) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:150) build 23-May-2019 13:07:13 [exec] at java.lang.ClassLoader.loadClass(ClassLoader.java:357) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle.loadClass(EquinoxBundle.java:609) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.registry.osgi.RegistryStrategyOSGI.createExecutableExtension(RegistryStrategyOSGI.java:177) build 23-May-2019 13:07:13 [exec] ... 42 more build 23-May-2019 13:07:13 [exec] Caused by: org.osgi.framework.BundleException: Exception in org.eclipse.ui.externaltools.internal.model.ExternalToolsPlugin.start() of bundle org.eclipse.ui.externaltools. build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.startActivator(BundleContextImpl.java:800) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.start(BundleContextImpl.java:729) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle.startWorker0(EquinoxBundle.java:1002) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle$EquinoxModule.startWorker(EquinoxBundle.java:354) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.container.Module.doStart(Module.java:581) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.container.Module.start(Module.java:449) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.framework.util.SecureAction.start(SecureAction.java:468) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.hooks.EclipseLazyStarter.postFindLocalClass(EclipseLazyStarter.java:114) build 23-May-2019 13:07:13 [exec] ... 52 more build 23-May-2019 13:07:13 [exec] Caused by: java.lang.IllegalStateException: Workbench has not been created yet. build 23-May-2019 13:07:13 [exec] at org.eclipse.ui.PlatformUI.getWorkbench(PlatformUI.java:93) build 23-May-2019 13:07:13 [exec] at org.eclipse.ui.externaltools.internal.model.ExternalToolsPlugin.start(ExternalToolsPlugin.java:254) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:779) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:1) build 23-May-2019 13:07:13 [exec] at java.security.AccessController.doPrivileged(Native Method) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.startActivator(BundleContextImpl.java:772) build 23-May-2019 13:07:13 [exec] ... 59 more build 23-May-2019 13:07:13 [exec] !SUBENTRY 1 org.eclipse.equinox.registry 4 1 2019-05-23 13:07:10.435 build 23-May-2019 13:07:13 [exec] !MESSAGE Plug-in org.eclipse.ui.externaltools was unable to load class org.eclipse.ui.externaltools.internal.variables.BuildProjectResolver. build 23-May-2019 13:07:13 [exec] !STACK 0 build 23-May-2019 13:07:13 [exec] java.lang.ClassNotFoundException: An error occurred while automatically activating bundle org.eclipse.ui.externaltools (786). build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.hooks.EclipseLazyStarter.postFindLocalClass(EclipseLazyStarter.java:123) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClass(ClasspathManager.java:505) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.findLocalClass(ModuleClassLoader.java:328) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findLocalClass(BundleLoader.java:392) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:470) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:419) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:411) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:150) build 23-May-2019 13:07:13 [exec] at java.lang.ClassLoader.loadClass(ClassLoader.java:357) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle.loadClass(EquinoxBundle.java:609) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.registry.osgi.RegistryStrategyOSGI.createExecutableExtension(RegistryStrategyOSGI.java:177) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.registry.ExtensionRegistry.createExecutableExtension(ExtensionRegistry.java:931) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.registry.ConfigurationElement.createExecutableExtension(ConfigurationElement.java:243) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.registry.ConfigurationElementHandle.createExecutableExtension(ConfigurationElementHandle.java:60) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.DynamicVariable.getValue(DynamicVariable.java:48) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.resolve(StringSubstitutionEngine.java:269) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.substitute(StringSubstitutionEngine.java:192) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.performStringSubstitution(StringSubstitutionEngine.java:87) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.StringVariableManager.performStringSubstitution(StringVariableManager.java:592) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.StringVariableManager.performStringSubstitution(StringVariableManager.java:358) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.externaltools.internal.launchConfigurations.ExternalToolsCoreUtil.getLocation(ExternalToolsCoreUtil.java:73) build 23-May-2019 13:07:13 [exec] at org.eclipse.ant.internal.launching.launchConfigurations.AntLaunchDelegate.launch(AntLaunchDelegate.java:161) build 23-May-2019 13:07:13 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:859) build 23-May-2019 13:07:13 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:717) build 23-May-2019 13:07:13 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:712) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.launchBuild(ExternalToolBuilder.java:183) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.doBuildBasedOnScope(ExternalToolBuilder.java:171) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.build(ExternalToolBuilder.java:90) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$2.run(BuildManager.java:795) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:216) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:259) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$1.run(BuildManager.java:312) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:315) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuildLoop(BuildManager.java:367) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.build(BuildManager.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.buildInternal(Workspace.java:501) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.build(Workspace.java:401) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.apt.core.build.AptBuilder.start(AptBuilder.java:56) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) build 23-May-2019 13:07:13 [exec] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) build 23-May-2019 13:07:13 [exec] at java.lang.reflect.Method.invoke(Method.java:498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:656) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.basicRun(Main.java:592) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.run(Main.java:1498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.main(Main.java:1471) build 23-May-2019 13:07:13 [exec] Caused by: org.osgi.framework.BundleException: Exception in org.eclipse.ui.externaltools.internal.model.ExternalToolsPlugin.start() of bundle org.eclipse.ui.externaltools. build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.startActivator(BundleContextImpl.java:800) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.start(BundleContextImpl.java:729) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle.startWorker0(EquinoxBundle.java:1002) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle$EquinoxModule.startWorker(EquinoxBundle.java:354) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.container.Module.doStart(Module.java:581) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.container.Module.start(Module.java:449) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.framework.util.SecureAction.start(SecureAction.java:468) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.hooks.EclipseLazyStarter.postFindLocalClass(EclipseLazyStarter.java:114) build 23-May-2019 13:07:13 [exec] ... 52 more build 23-May-2019 13:07:13 [exec] Caused by: java.lang.IllegalStateException: Workbench has not been created yet. build 23-May-2019 13:07:13 [exec] at org.eclipse.ui.PlatformUI.getWorkbench(PlatformUI.java:93) build 23-May-2019 13:07:13 [exec] at org.eclipse.ui.externaltools.internal.model.ExternalToolsPlugin.start(ExternalToolsPlugin.java:254) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:779) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:1) build 23-May-2019 13:07:13 [exec] at java.security.AccessController.doPrivileged(Native Method) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.startActivator(BundleContextImpl.java:772) build 23-May-2019 13:07:13 [exec] ... 59 more build 23-May-2019 13:07:13 [exec] !SUBENTRY 1 org.eclipse.equinox.registry 4 1 2019-05-23 13:07:10.435 build 23-May-2019 13:07:13 [exec] !MESSAGE Plug-in org.eclipse.ui.externaltools was unable to load class org.eclipse.ui.externaltools.internal.variables.BuildProjectResolver. build 23-May-2019 13:07:13 [exec] !STACK 0 build 23-May-2019 13:07:13 [exec] java.lang.ClassNotFoundException: An error occurred while automatically activating bundle org.eclipse.ui.externaltools (786). build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.hooks.EclipseLazyStarter.postFindLocalClass(EclipseLazyStarter.java:123) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClass(ClasspathManager.java:505) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.findLocalClass(ModuleClassLoader.java:328) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findLocalClass(BundleLoader.java:392) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:470) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:419) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:411) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:150) build 23-May-2019 13:07:13 [exec] at java.lang.ClassLoader.loadClass(ClassLoader.java:357) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle.loadClass(EquinoxBundle.java:609) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.registry.osgi.RegistryStrategyOSGI.createExecutableExtension(RegistryStrategyOSGI.java:177) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.registry.ExtensionRegistry.createExecutableExtension(ExtensionRegistry.java:931) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.registry.ConfigurationElement.createExecutableExtension(ConfigurationElement.java:243) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.registry.ConfigurationElementHandle.createExecutableExtension(ConfigurationElementHandle.java:60) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.DynamicVariable.getValue(DynamicVariable.java:48) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.resolve(StringSubstitutionEngine.java:269) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.substitute(StringSubstitutionEngine.java:192) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.performStringSubstitution(StringSubstitutionEngine.java:87) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.StringVariableManager.performStringSubstitution(StringVariableManager.java:592) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.StringVariableManager.performStringSubstitution(StringVariableManager.java:358) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.externaltools.internal.launchConfigurations.ExternalToolsCoreUtil.getLocation(ExternalToolsCoreUtil.java:73) build 23-May-2019 13:07:13 [exec] at org.eclipse.ant.internal.launching.launchConfigurations.AntLaunchDelegate.launch(AntLaunchDelegate.java:161) build 23-May-2019 13:07:13 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:859) build 23-May-2019 13:07:13 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:717) build 23-May-2019 13:07:13 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:712) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.launchBuild(ExternalToolBuilder.java:183) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.doBuildBasedOnScope(ExternalToolBuilder.java:171) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.build(ExternalToolBuilder.java:90) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$2.run(BuildManager.java:795) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:216) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:259) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$1.run(BuildManager.java:312) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:315) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuildLoop(BuildManager.java:367) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.build(BuildManager.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.buildInternal(Workspace.java:501) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.build(Workspace.java:401) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.apt.core.build.AptBuilder.start(AptBuilder.java:56) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) build 23-May-2019 13:07:13 [exec] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) build 23-May-2019 13:07:13 [exec] at java.lang.reflect.Method.invoke(Method.java:498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:656) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.basicRun(Main.java:592) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.run(Main.java:1498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.main(Main.java:1471) build 23-May-2019 13:07:13 [exec] Caused by: org.osgi.framework.BundleException: Exception in org.eclipse.ui.externaltools.internal.model.ExternalToolsPlugin.start() of bundle org.eclipse.ui.externaltools. build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.startActivator(BundleContextImpl.java:800) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.start(BundleContextImpl.java:729) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle.startWorker0(EquinoxBundle.java:1002) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle$EquinoxModule.startWorker(EquinoxBundle.java:354) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.container.Module.doStart(Module.java:581) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.container.Module.start(Module.java:449) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.framework.util.SecureAction.start(SecureAction.java:468) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.hooks.EclipseLazyStarter.postFindLocalClass(EclipseLazyStarter.java:114) build 23-May-2019 13:07:13 [exec] ... 52 more build 23-May-2019 13:07:13 [exec] Caused by: java.lang.IllegalStateException: Workbench has not been created yet. build 23-May-2019 13:07:13 [exec] at org.eclipse.ui.PlatformUI.getWorkbench(PlatformUI.java:93) build 23-May-2019 13:07:13 [exec] at org.eclipse.ui.externaltools.internal.model.ExternalToolsPlugin.start(ExternalToolsPlugin.java:254) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:779) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:1) build 23-May-2019 13:07:13 [exec] at java.security.AccessController.doPrivileged(Native Method) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.startActivator(BundleContextImpl.java:772) build 23-May-2019 13:07:13 [exec] ... 59 more build 23-May-2019 13:07:13 [exec] build 23-May-2019 13:07:13 [exec] !ENTRY org.eclipse.osgi 4 0 2019-05-23 13:07:10.534 build 23-May-2019 13:07:13 [exec] !MESSAGE Application error build 23-May-2019 13:07:13 [exec] !STACK 1 build 23-May-2019 13:07:13 [exec] org.eclipse.core.internal.resources.ResourceException: Errors occurred during the build. build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.buildInternal(Workspace.java:517) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.build(Workspace.java:401) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.apt.core.build.AptBuilder.start(AptBuilder.java:56) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) build 23-May-2019 13:07:13 [exec] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) build 23-May-2019 13:07:13 [exec] at java.lang.reflect.Method.invoke(Method.java:498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:656) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.basicRun(Main.java:592) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.run(Main.java:1498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.main(Main.java:1471) build 23-May-2019 13:07:13 [exec] Contains: Errors running builder 'Integrated External Tool Builder' on project 'jalview-js'. build 23-May-2019 13:07:13 [exec] org.eclipse.core.runtime.CoreException: Plug-in org.eclipse.ui.externaltools was unable to load class org.eclipse.ui.externaltools.internal.variables.BuildProjectResolver. build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.registry.osgi.RegistryStrategyOSGI.throwException(RegistryStrategyOSGI.java:197) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.registry.osgi.RegistryStrategyOSGI.createExecutableExtension(RegistryStrategyOSGI.java:179) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.registry.ExtensionRegistry.createExecutableExtension(ExtensionRegistry.java:931) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.registry.ConfigurationElement.createExecutableExtension(ConfigurationElement.java:243) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.registry.ConfigurationElementHandle.createExecutableExtension(ConfigurationElementHandle.java:60) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.DynamicVariable.getValue(DynamicVariable.java:48) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.resolve(StringSubstitutionEngine.java:269) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.substitute(StringSubstitutionEngine.java:192) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.performStringSubstitution(StringSubstitutionEngine.java:87) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.StringVariableManager.performStringSubstitution(StringVariableManager.java:592) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.StringVariableManager.performStringSubstitution(StringVariableManager.java:358) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.externaltools.internal.launchConfigurations.ExternalToolsCoreUtil.getLocation(ExternalToolsCoreUtil.java:73) build 23-May-2019 13:07:13 [exec] at org.eclipse.ant.internal.launching.launchConfigurations.AntLaunchDelegate.launch(AntLaunchDelegate.java:161) build 23-May-2019 13:07:13 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:859) build 23-May-2019 13:07:13 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:717) build 23-May-2019 13:07:13 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:712) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.launchBuild(ExternalToolBuilder.java:183) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.doBuildBasedOnScope(ExternalToolBuilder.java:171) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.build(ExternalToolBuilder.java:90) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$2.run(BuildManager.java:795) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:216) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:259) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$1.run(BuildManager.java:312) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:315) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuildLoop(BuildManager.java:367) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.build(BuildManager.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.buildInternal(Workspace.java:501) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.build(Workspace.java:401) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.apt.core.build.AptBuilder.start(AptBuilder.java:56) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) build 23-May-2019 13:07:13 [exec] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) build 23-May-2019 13:07:13 [exec] at java.lang.reflect.Method.invoke(Method.java:498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:656) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.basicRun(Main.java:592) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.run(Main.java:1498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.main(Main.java:1471) build 23-May-2019 13:07:13 [exec] Caused by: java.lang.ClassNotFoundException: An error occurred while automatically activating bundle org.eclipse.ui.externaltools (786). build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.hooks.EclipseLazyStarter.postFindLocalClass(EclipseLazyStarter.java:123) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClass(ClasspathManager.java:505) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.findLocalClass(ModuleClassLoader.java:328) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findLocalClass(BundleLoader.java:392) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:470) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:419) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:411) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:150) build 23-May-2019 13:07:13 [exec] at java.lang.ClassLoader.loadClass(ClassLoader.java:357) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle.loadClass(EquinoxBundle.java:609) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.registry.osgi.RegistryStrategyOSGI.createExecutableExtension(RegistryStrategyOSGI.java:177) build 23-May-2019 13:07:13 [exec] ... 42 more build 23-May-2019 13:07:13 [exec] Caused by: org.osgi.framework.BundleException: Exception in org.eclipse.ui.externaltools.internal.model.ExternalToolsPlugin.start() of bundle org.eclipse.ui.externaltools. build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.startActivator(BundleContextImpl.java:800) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.start(BundleContextImpl.java:729) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle.startWorker0(EquinoxBundle.java:1002) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle$EquinoxModule.startWorker(EquinoxBundle.java:354) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.container.Module.doStart(Module.java:581) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.container.Module.start(Module.java:449) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.framework.util.SecureAction.start(SecureAction.java:468) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.hooks.EclipseLazyStarter.postFindLocalClass(EclipseLazyStarter.java:114) build 23-May-2019 13:07:13 [exec] ... 52 more build 23-May-2019 13:07:13 [exec] Caused by: java.lang.IllegalStateException: Workbench has not been created yet. build 23-May-2019 13:07:13 [exec] at org.eclipse.ui.PlatformUI.getWorkbench(PlatformUI.java:93) build 23-May-2019 13:07:13 [exec] at org.eclipse.ui.externaltools.internal.model.ExternalToolsPlugin.start(ExternalToolsPlugin.java:254) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:779) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:1) build 23-May-2019 13:07:13 [exec] at java.security.AccessController.doPrivileged(Native Method) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.startActivator(BundleContextImpl.java:772) build 23-May-2019 13:07:13 [exec] ... 59 more build 23-May-2019 13:07:13 [exec] Contains: Plug-in org.eclipse.ui.externaltools was unable to load class org.eclipse.ui.externaltools.internal.variables.BuildProjectResolver. build 23-May-2019 13:07:13 [exec] java.lang.ClassNotFoundException: An error occurred while automatically activating bundle org.eclipse.ui.externaltools (786). build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.hooks.EclipseLazyStarter.postFindLocalClass(EclipseLazyStarter.java:123) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClass(ClasspathManager.java:505) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.findLocalClass(ModuleClassLoader.java:328) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findLocalClass(BundleLoader.java:392) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:470) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:419) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:411) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:150) build 23-May-2019 13:07:13 [exec] at java.lang.ClassLoader.loadClass(ClassLoader.java:357) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle.loadClass(EquinoxBundle.java:609) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.registry.osgi.RegistryStrategyOSGI.createExecutableExtension(RegistryStrategyOSGI.java:177) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.registry.ExtensionRegistry.createExecutableExtension(ExtensionRegistry.java:931) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.registry.ConfigurationElement.createExecutableExtension(ConfigurationElement.java:243) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.registry.ConfigurationElementHandle.createExecutableExtension(ConfigurationElementHandle.java:60) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.DynamicVariable.getValue(DynamicVariable.java:48) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.resolve(StringSubstitutionEngine.java:269) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.substitute(StringSubstitutionEngine.java:192) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.performStringSubstitution(StringSubstitutionEngine.java:87) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.StringVariableManager.performStringSubstitution(StringVariableManager.java:592) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.variables.StringVariableManager.performStringSubstitution(StringVariableManager.java:358) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.externaltools.internal.launchConfigurations.ExternalToolsCoreUtil.getLocation(ExternalToolsCoreUtil.java:73) build 23-May-2019 13:07:13 [exec] at org.eclipse.ant.internal.launching.launchConfigurations.AntLaunchDelegate.launch(AntLaunchDelegate.java:161) build 23-May-2019 13:07:13 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:859) build 23-May-2019 13:07:13 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:717) build 23-May-2019 13:07:13 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:712) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.launchBuild(ExternalToolBuilder.java:183) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.doBuildBasedOnScope(ExternalToolBuilder.java:171) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.build(ExternalToolBuilder.java:90) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$2.run(BuildManager.java:795) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:216) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:259) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager$1.run(BuildManager.java:312) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:315) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuildLoop(BuildManager.java:367) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.events.BuildManager.build(BuildManager.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.buildInternal(Workspace.java:501) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.internal.resources.Workspace.build(Workspace.java:401) build 23-May-2019 13:07:13 [exec] at org.eclipse.jdt.apt.core.build.AptBuilder.start(AptBuilder.java:56) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388) build 23-May-2019 13:07:13 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) build 23-May-2019 13:07:13 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) build 23-May-2019 13:07:13 [exec] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) build 23-May-2019 13:07:13 [exec] at java.lang.reflect.Method.invoke(Method.java:498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:656) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.basicRun(Main.java:592) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.run(Main.java:1498) build 23-May-2019 13:07:13 [exec] at org.eclipse.equinox.launcher.Main.main(Main.java:1471) build 23-May-2019 13:07:13 [exec] Caused by: org.osgi.framework.BundleException: Exception in org.eclipse.ui.externaltools.internal.model.ExternalToolsPlugin.start() of bundle org.eclipse.ui.externaltools. build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.startActivator(BundleContextImpl.java:800) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.start(BundleContextImpl.java:729) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle.startWorker0(EquinoxBundle.java:1002) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle$EquinoxModule.startWorker(EquinoxBundle.java:354) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.container.Module.doStart(Module.java:581) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.container.Module.start(Module.java:449) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.framework.util.SecureAction.start(SecureAction.java:468) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.hooks.EclipseLazyStarter.postFindLocalClass(EclipseLazyStarter.java:114) build 23-May-2019 13:07:13 [exec] ... 52 more build 23-May-2019 13:07:13 [exec] Caused by: java.lang.IllegalStateException: Workbench has not been created yet. build 23-May-2019 13:07:13 [exec] at org.eclipse.ui.PlatformUI.getWorkbench(PlatformUI.java:93) build 23-May-2019 13:07:13 [exec] at org.eclipse.ui.externaltools.internal.model.ExternalToolsPlugin.start(ExternalToolsPlugin.java:254) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:779) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:1) build 23-May-2019 13:07:13 [exec] at java.security.AccessController.doPrivileged(Native Method) build 23-May-2019 13:07:13 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.startActivator(BundleContextImpl.java:772) build 23-May-2019 13:07:13 [exec] ... 59 more build 23-May-2019 13:07:13 [exec] build 23-May-2019 13:07:13 [exec] !ENTRY org.eclipse.core.resources 2 10035 2019-05-23 13:07:11.661 build 23-May-2019 13:07:13 [exec] !MESSAGE The workspace will exit with unsaved changes in this session. build 23-May-2019 13:07:14 [copy] Copying 1025 files to /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1/site build 23-May-2019 13:07:15 [copy] Copied 129 empty directories to 3 empty directories under /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1/site build 23-May-2019 13:07:15 build 23-May-2019 13:07:15 unzip-to-site: build 23-May-2019 13:07:15 build 23-May-2019 13:07:15 tosite: build 23-May-2019 13:07:15 Trying to override old definition of task switch build 23-May-2019 13:07:15 [unzip] Expanding: /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1/libjs/MiGLayout-site.zip into /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1/site build 23-May-2019 13:07:15 [unzip] Expanding: /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1/libjs/VARNA-site.zip into /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1/site build 23-May-2019 13:07:15 [unzip] Expanding: /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1/libjs/intervalstore-site.zip into /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1/site build 23-May-2019 13:07:15 [unzip] Expanding: /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1/libjs/jmol-app.zip into /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1/site build 23-May-2019 13:07:16 [unzip] Expanding: /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1/swingjs/SwingJS-site.zip into /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1/site build 23-May-2019 13:07:16 [echo] Copying resources files into site/swingjs/j2s build 23-May-2019 13:07:16 [copy] Copying 31 files to /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1/site/swingjs/j2s build 23-May-2019 13:07:16 [echo] Copying site-resources files into site build 23-May-2019 13:07:16 [copy] Copying 10 files to /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1/site build 23-May-2019 13:07:16 build 23-May-2019 13:07:16 make-j2s-cores: build 23-May-2019 13:07:16 Trying to override old definition of task switch build 23-May-2019 13:07:16 build 23-May-2019 13:07:16 toJs: build 23-May-2019 13:07:16 [echo] Building core file '_jalview' - warnings are OK; "does not exist" is trouble build 23-May-2019 13:07:16 [echo] Reading core class list from file _j2sclasslist.txt build 23-May-2019 13:07:16 build 23-May-2019 13:07:16 call-core: build 23-May-2019 13:07:16 [echo] ......Creating core_jalview.js build 23-May-2019 13:07:16 [concat] /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1/site/swingjs/j2s/jalview/datamodel/features/RangeComparator.js does not exist. build 23-May-2019 13:07:16 [concat] /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1/site/swingjs/j2s/java/net/HttpsURLConnection.js does not exist. build 23-May-2019 13:07:16 [echo] ......Generating site/swingjs/j2s/core/core_jalview.js build 23-May-2019 13:07:16 [echo] ......Generating site/swingjs/j2s/core/core_jalview.z.js build 23-May-2019 13:07:49 [java] core_jalview.js:2380: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:07:49 [java] if ((this.eventMask & 4096) != 0) { build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:8461: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:07:49 [java] /*sync org.eclipse.jdt.core.dom.ConditionalExpression*/((prev != null ) ? prev : this); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:8461: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:07:49 [java] /*sync org.eclipse.jdt.core.dom.ConditionalExpression*/((prev != null ) ? prev : this); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:8461: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:07:49 [java] /*sync org.eclipse.jdt.core.dom.ConditionalExpression*/((prev != null ) ? prev : this); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:19836: WARNING - unreachable code build 23-May-2019 13:07:49 [java] return false; build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:22916: WARNING - Suspicious code. The result of the 'getelem' operator is not being used. build 23-May-2019 13:07:49 [java] (($b$[0]=++groupingCount,groupingCount=$b$[0],$b$[0])); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:22922: WARNING - Suspicious code. The result of the 'getelem' operator is not being used. build 23-May-2019 13:07:49 [java] (($b$[0]=++groupingCount,groupingCount=$b$[0],$b$[0])); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:22936: WARNING - Suspicious code. The result of the 'getelem' operator is not being used. build 23-May-2019 13:07:49 [java] (($b$[0]=++this.minExponentDigits,this.minExponentDigits=$b$[0],$b$[0])); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:23546: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] for (right=18; this.digits[right] == "0"; --right) ; build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:52118: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:07:49 [java] if (heavyParent != null ) { build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:57024: WARNING - unreachable code build 23-May-2019 13:07:49 [java] if (false && !this.working ) p$1.updateSystemSelection.apply(this, []); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:57138: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:07:49 [java] if (this.this$0.width == 0 || this.this$0.height == 0 ) { build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:57139: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:07:49 [java] if (this.this$0.component != null ) { build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:60097: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:07:49 [java] if (l != null ) { build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:66896: WARNING - Suspicious code. The result of the 'getprop' operator is not being used. build 23-May-2019 13:07:49 [java] if (!jQuery.ui) try{ (function(e,t){function i(t,n){var r,i,o,u=t.nodeName.toLowerCase();return"area"===u?(r=t.parentNode,i=r.name,!t.href||!i||r.nodeName.toLowerCase()!=="map"?!1:(o=e("img[usemap=#"+i+"]")[0],!!o&&s(o))):(/input|select|textarea|button|object/.test(u)?!t.disabled:"a"===u?t.href||n:n)&&s(t)}function s(t){return e.expr.filters.visible(t)&&!e(t).parents().andSelf().filter(function(){return e.css(this,"visibility")==="hidden"}).length}var n=0,r=/^ui-id-\d+$/;e.ui=e.ui||{};if(e.ui.version)return;e.extend(e.ui,{version:"1.9.2",keyCode:{BACKSPACE:8,COMMA:188,DELETE:46,DOWN:40,END:35,ENTER:13,ESCAPE:27,HOME:36,LEFT:37,NUMPAD_ADD:107,NUMPAD_DECIMAL:110,NUMPAD_DIVIDE:111,NUMPAD_ENTER:108,NUMPAD_MULTIPLY:106,NUMPAD_SUBTRACT:109,PAGE_DOWN:34,PAGE_UP:33,PERIOD:190,RIGHT:39,SPACE:32,TAB:9,UP:38}}),e.fn.extend({_focus:e.fn.focus,focus:function(t,n){return typeof t=="number"?this.each(function(){var r=this;setTimeout(function(){e(r).focus(),n&&n.call(r)},t)}):this._focus.apply(this,arguments)},scrollParent:function(){var t;return e.ui.ie&&/(static|relative)/.test(this.css("position"))||/absolute/.test(this.css("position"))?t=this.parents().filter(function(){return/(relative|absolute|fixed)/.test(e.css(this,"position"))&&/(auto|scroll)/.test(e.css(this,"overflow")+e.css(this,"overflow-y")+e.css(this,"overflow-x"))}).eq(0):t=this.parents().filter(function(){return/(auto|scroll)/.test(e.css(this,"overflow")+e.css(this,"overflow-y")+e.css(this,"overflow-x"))}).eq(0),/fixed/.test(this.css("position"))||!t.length?e(document):t},zIndex:function(n){if(n!==t)return this.css("zIndex",n);if(this.length){var r=e(this[0]),i,s;while(r.length&&r[0]!==document){i=r.css("position");if(i==="absolute"||i==="relative"||i==="fixed"){s=parseInt(r.css("zIndex"),10);if(!isNaN(s)&&s!==0)return s}r=r.parent()}}return 0},uniqueId:function(){return this.each(function(){this.id||(this.id="ui-id-"+ ++n)})},removeUniqueId:function(){return this.each(function(){r.test(this.id)&&e(this).removeAttr("id")})}}),e.extend(e.expr[":"],{data:e.expr.createPseudo?e.expr.createPseudo(function(t){return function(n){return!!e.data(n,t)}}):function(t,n,r){return!!e.data(t,r[3])},focusable:function(t){return i(t,!isNaN(e.attr(t,"tabindex")))},tabbable:function(t){var n=e.attr(t,"tabindex"),r=isNaN(n);return(r||n>=0)&&i(t,!r)}}),e(function(){var t=document.body,n=t.appendChild(n=document.createElement("div"));n.offsetHeight,e.extend(n.style,{minHeight:"100px",height:"auto",padding:0,borderWidth:0}),e.support.minHeight=n.offsetHeight===100,e.support.selectstart="onselectstart"in n,t.removeChild(n).style.display="none"}),e("").outerWidth(1).jquery||e.each(["Width","Height"],function(n,r){function u(t,n,r,s){return e.each(i,function(){n-=parseFloat(e.css(t,"padding"+this))||0,r&&(n-=parseFloat(e.css(t,"border"+this+"Width"))||0),s&&(n-=parseFloat(e.css(t,"margin"+this))||0)}),n}var i=r==="Width"?["Left","Right"]:["Top","Bottom"],s=r.toLowerCase(),o={innerWidth:e.fn.innerWidth,innerHeight:e.fn.innerHeight,outerWidth:e.fn.outerWidth,outerHeight:e.fn.outerHeight};e.fn["inner"+r]=function(n){return n===t?o["inner"+r].call(this):this.each(function(){e(this).css(s,u(this,n)+"px")})},e.fn["outer"+r]=function(t,n){return typeof t!="number"?o["outer"+r].call(this,t):this.each(function(){e(this).css(s,u(this,t,!0,n)+"px")})}}),e("").data("a-b","a").removeData("a-b").data("a-b")&&(e.fn.removeData=function(t){return function(n){return arguments.length?t.call(this,e.camelCase(n)):t.call(this)}}(e.fn.removeData)),function(){var t=/msie ([\w.]+)/.exec(navigator.userAgent.toLowerCase())||[];e.ui.ie=t.length?!0:!1,e.ui.ie6=parseFloat(t[1],10)===6}(),e.fn.extend({disableSelection:function(){return this.bind((e.support.selectstart?"selectstart":"mousedown")+".ui-disableSelection",function(e){e.preventDefault()})},enableSelection:function(){return this.unbind(".ui-disableSelection")}}),e.extend(e.ui,{plugin:{add:function(t,n,r){var i,s=e.ui[t].prototype;for(i in r)s.plugins[i]=s.plugins[i]||[],s.plugins[i].push([n,r[i]])},call:function(e,t,n){var r,i=e.plugins[t];if(!i||!e.element[0].parentNode||e.element[0].parentNode.nodeType===11)return;for(r=0;r0?!0:(t[r]=1,i=t[r]>0,t[r]=0,i)},isOverAxis:function(e,t,n){return e>t&&e 60) { build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:118340: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:07:49 [java] if (parmSet != null ) { build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:118637: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:07:49 [java] if (this.attemptversion1parse) { build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:128462: WARNING - unreachable code build 23-May-2019 13:07:49 [java] return null; build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:129080: WARNING - unreachable code build 23-May-2019 13:07:49 [java] if (false) { build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:129086: WARNING - unreachable code build 23-May-2019 13:07:49 [java] }if (false) { build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:129100: WARNING - unreachable code build 23-May-2019 13:07:49 [java] if (false) { build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:129104: WARNING - unreachable code build 23-May-2019 13:07:49 [java] }if (false) { build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:131954: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:07:49 [java] if (this.featureGroups == null ) { build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:131988: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:07:49 [java] if (rdrw) { build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:133199: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:07:49 [java] if (this.ap != null ) { build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:139211: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:07:49 [java] if ((this.eventMask & 4096) != 0) { build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:144328: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:07:49 [java] /*sync org.eclipse.jdt.core.dom.ConditionalExpression*/((prev != null ) ? prev : this); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:144328: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:07:49 [java] /*sync org.eclipse.jdt.core.dom.ConditionalExpression*/((prev != null ) ? prev : this); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:144328: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:07:49 [java] /*sync org.eclipse.jdt.core.dom.ConditionalExpression*/((prev != null ) ? prev : this); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:163471: WARNING - unreachable code build 23-May-2019 13:07:49 [java] return false; build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:169344: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] for (i=0; (b=p$1.getInt$I.apply(this, [i])) == 0; i++) ; build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:169680: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] for (keep=0; keep < vlen && val[keep] == 0 ; keep++) ; build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:169687: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] for (keep=0; keep < vlen && val[keep] == 0 ; keep++) ; build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:169747: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] for (keep=0; keep < a.length && a[keep] == -1 ; keep++) ; build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:169748: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] for (j=keep; j < a.length && a[j] == 0 ; j++) ; build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:169753: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] for (var i=result.length - 1; ++result[i] == 0; i--) ; build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:169778: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] for (i=mlen - 1; i >= 0 && this.mag[i] == 0 ; i--) ; build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:174490: WARNING - Suspicious code. The result of the 'getelem' operator is not being used. build 23-May-2019 13:07:49 [java] (($b$[0]=++groupingCount,groupingCount=$b$[0],$b$[0])); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:174496: WARNING - Suspicious code. The result of the 'getelem' operator is not being used. build 23-May-2019 13:07:49 [java] (($b$[0]=++groupingCount,groupingCount=$b$[0],$b$[0])); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:174510: WARNING - Suspicious code. The result of the 'getelem' operator is not being used. build 23-May-2019 13:07:49 [java] (($b$[0]=++this.minExponentDigits,this.minExponentDigits=$b$[0],$b$[0])); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:175120: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] for (right=18; this.digits[right] == "0"; --right) ; build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:177117: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] while (this.poll$() != null ); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:186080: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] while (++k <= right && a[k - 1] <= a[k] ); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:186082: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] while (++k <= right && a[k - 1] >= a[k] ); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:186103: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] for (var n=1; (n<<=1) < count; odd=($b$[0] = odd^(1), $b$[0])) ; build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:186134: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] for (var i=right, lo=run[count - 1]; --i >= lo; b[i + bo]=a[i + ao]) ; build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:186231: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] while (a[++less] < pivot1); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:186232: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] while (a[--great] > pivot2); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:186323: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] while (++k <= right && a[k - 1] <= a[k] ); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:186325: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] while (++k <= right && a[k - 1] >= a[k] ); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:186346: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] for (var n=1; (n<<=1) < count; odd=($b$[0] = odd^(1), $b$[0])) ; build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:186377: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] for (var i=right, lo=run[count - 1]; --i >= lo; b[i + bo]=a[i + ao]) ; build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:186474: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] while (a[++less] < pivot1); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:186475: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] while (a[--great] > pivot2); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:186560: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] for (var i=left - 1; ++i <= right; count[a[i] - -32768]++) ; build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:186562: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] while (count[--i] == 0); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:186582: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] while (++k <= right && a[k - 1] <= a[k] ); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:186584: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] while (++k <= right && a[k - 1] >= a[k] ); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:186605: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] for (var n=1; (n<<=1) < count; odd=($b$[0] = odd^(1), $b$[0])) ; build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:186636: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] for (var i=right, lo=run[count - 1]; --i >= lo; b[i + bo]=a[i + ao]) ; build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:186733: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] while (a[++less] < pivot1); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:186734: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] while (a[--great] > pivot2); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:186819: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] for (var i=left - 1; ++i <= right; count[(a[i]).$c()]++) ; build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:186821: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] while (count[--i] == 0); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:186841: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] while (++k <= right && a[k - 1] <= a[k] ); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:186843: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] while (++k <= right && a[k - 1] >= a[k] ); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:186864: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] for (var n=1; (n<<=1) < count; odd=($b$[0] = odd^(1), $b$[0])) ; build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:186895: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] for (var i=right, lo=run[count - 1]; --i >= lo; b[i + bo]=a[i + ao]) ; build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:186992: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] while (a[++less] < pivot1); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:186993: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] while (a[--great] > pivot2); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:187078: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] for (var i=left - 1; ++i <= right; count[a[i] - -128]++) ; build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:187080: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] while (count[--i] == 0); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:187142: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] while (++k <= right && a[k - 1] <= a[k] ); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:187144: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] while (++k <= right && a[k - 1] >= a[k] ); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:187165: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] for (var n=1; (n<<=1) < count; odd=($b$[0] = odd^(1), $b$[0])) ; build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:187196: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] for (var i=right, lo=run[count - 1]; --i >= lo; b[i + bo]=a[i + ao]) ; build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:187293: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] while (a[++less] < pivot1 ); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:187294: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] while (a[--great] > pivot2 ); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:187419: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] while (++k <= right && a[k - 1] <= a[k] ); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:187421: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] while (++k <= right && a[k - 1] >= a[k] ); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:187442: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] for (var n=1; (n<<=1) < count; odd=($b$[0] = odd^(1), $b$[0])) ; build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:187473: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] for (var i=right, lo=run[count - 1]; --i >= lo; b[i + bo]=a[i + ao]) ; build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:187570: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] while (a[++less] < pivot1 ); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:187571: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] while (a[--great] > pivot2 ); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:188120: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:07:49 [java] if (field == 5) { build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:200338: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:07:49 [java] if (sm != null ) { build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:200491: WARNING - unreachable code build 23-May-2019 13:07:49 [java] return this.e.submit$Runnable(task); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:204623: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:07:49 [java] if(string.indexOf('\\') < 0 && string.indexOf ('$')<0) ; // ')) build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:204625: WARNING - unreachable code build 23-May-2019 13:07:49 [java] var res= Clazz_new_(StringBuffer, [string.length*2]); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:214422: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:07:49 [java] } else if (!this.opened) { build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:220043: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:07:49 [java] if (heavyParent != null ) { build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:224187: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:07:49 [java] if (this.insideComponent == null ) { build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:235088: WARNING - unreachable code build 23-May-2019 13:07:49 [java] return null; build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:238909: WARNING - Suspicious code. The result of the 'getprop' operator is not being used. build 23-May-2019 13:07:49 [java] if (!jQuery.ui) try{ (function(e,t){function i(t,n){var r,i,o,u=t.nodeName.toLowerCase();return"area"===u?(r=t.parentNode,i=r.name,!t.href||!i||r.nodeName.toLowerCase()!=="map"?!1:(o=e("img[usemap=#"+i+"]")[0],!!o&&s(o))):(/input|select|textarea|button|object/.test(u)?!t.disabled:"a"===u?t.href||n:n)&&s(t)}function s(t){return e.expr.filters.visible(t)&&!e(t).parents().andSelf().filter(function(){return e.css(this,"visibility")==="hidden"}).length}var n=0,r=/^ui-id-\d+$/;e.ui=e.ui||{};if(e.ui.version)return;e.extend(e.ui,{version:"1.9.2",keyCode:{BACKSPACE:8,COMMA:188,DELETE:46,DOWN:40,END:35,ENTER:13,ESCAPE:27,HOME:36,LEFT:37,NUMPAD_ADD:107,NUMPAD_DECIMAL:110,NUMPAD_DIVIDE:111,NUMPAD_ENTER:108,NUMPAD_MULTIPLY:106,NUMPAD_SUBTRACT:109,PAGE_DOWN:34,PAGE_UP:33,PERIOD:190,RIGHT:39,SPACE:32,TAB:9,UP:38}}),e.fn.extend({_focus:e.fn.focus,focus:function(t,n){return typeof t=="number"?this.each(function(){var r=this;setTimeout(function(){e(r).focus(),n&&n.call(r)},t)}):this._focus.apply(this,arguments)},scrollParent:function(){var t;return e.ui.ie&&/(static|relative)/.test(this.css("position"))||/absolute/.test(this.css("position"))?t=this.parents().filter(function(){return/(relative|absolute|fixed)/.test(e.css(this,"position"))&&/(auto|scroll)/.test(e.css(this,"overflow")+e.css(this,"overflow-y")+e.css(this,"overflow-x"))}).eq(0):t=this.parents().filter(function(){return/(auto|scroll)/.test(e.css(this,"overflow")+e.css(this,"overflow-y")+e.css(this,"overflow-x"))}).eq(0),/fixed/.test(this.css("position"))||!t.length?e(document):t},zIndex:function(n){if(n!==t)return this.css("zIndex",n);if(this.length){var r=e(this[0]),i,s;while(r.length&&r[0]!==document){i=r.css("position");if(i==="absolute"||i==="relative"||i==="fixed"){s=parseInt(r.css("zIndex"),10);if(!isNaN(s)&&s!==0)return s}r=r.parent()}}return 0},uniqueId:function(){return this.each(function(){this.id||(this.id="ui-id-"+ ++n)})},removeUniqueId:function(){return this.each(function(){r.test(this.id)&&e(this).removeAttr("id")})}}),e.extend(e.expr[":"],{data:e.expr.createPseudo?e.expr.createPseudo(function(t){return function(n){return!!e.data(n,t)}}):function(t,n,r){return!!e.data(t,r[3])},focusable:function(t){return i(t,!isNaN(e.attr(t,"tabindex")))},tabbable:function(t){var n=e.attr(t,"tabindex"),r=isNaN(n);return(r||n>=0)&&i(t,!r)}}),e(function(){var t=document.body,n=t.appendChild(n=document.createElement("div"));n.offsetHeight,e.extend(n.style,{minHeight:"100px",height:"auto",padding:0,borderWidth:0}),e.support.minHeight=n.offsetHeight===100,e.support.selectstart="onselectstart"in n,t.removeChild(n).style.display="none"}),e("").outerWidth(1).jquery||e.each(["Width","Height"],function(n,r){function u(t,n,r,s){return e.each(i,function(){n-=parseFloat(e.css(t,"padding"+this))||0,r&&(n-=parseFloat(e.css(t,"border"+this+"Width"))||0),s&&(n-=parseFloat(e.css(t,"margin"+this))||0)}),n}var i=r==="Width"?["Left","Right"]:["Top","Bottom"],s=r.toLowerCase(),o={innerWidth:e.fn.innerWidth,innerHeight:e.fn.innerHeight,outerWidth:e.fn.outerWidth,outerHeight:e.fn.outerHeight};e.fn["inner"+r]=function(n){return n===t?o["inner"+r].call(this):this.each(function(){e(this).css(s,u(this,n)+"px")})},e.fn["outer"+r]=function(t,n){return typeof t!="number"?o["outer"+r].call(this,t):this.each(function(){e(this).css(s,u(this,t,!0,n)+"px")})}}),e("").data("a-b","a").removeData("a-b").data("a-b")&&(e.fn.removeData=function(t){return function(n){return arguments.length?t.call(this,e.camelCase(n)):t.call(this)}}(e.fn.removeData)),function(){var t=/msie ([\w.]+)/.exec(navigator.userAgent.toLowerCase())||[];e.ui.ie=t.length?!0:!1,e.ui.ie6=parseFloat(t[1],10)===6}(),e.fn.extend({disableSelection:function(){return this.bind((e.support.selectstart?"selectstart":"mousedown")+".ui-disableSelection",function(e){e.preventDefault()})},enableSelection:function(){return this.unbind(".ui-disableSelection")}}),e.extend(e.ui,{plugin:{add:function(t,n,r){var i,s=e.ui[t].prototype;for(i in r)s.plugins[i]=s.plugins[i]||[],s.plugins[i].push([n,r[i]])},call:function(e,t,n){var r,i=e.plugins[t];if(!i||!e.element[0].parentNode||e.element[0].parentNode.nodeType===11)return;for(r=0;r0?!0:(t[r]=1,i=t[r]>0,t[r]=0,i)},isOverAxis:function(e,t,n){return e>t&&e= 0 ) { build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:253691: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:07:49 [java] if (!parseResult) { build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:262146: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:07:49 [java] if (this.editorRemover == null ) { build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:265956: WARNING - unreachable code build 23-May-2019 13:07:49 [java] if (false && !this.working ) p$1.updateSystemSelection.apply(this, []); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:266070: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:07:49 [java] if (this.this$0.width == 0 || this.this$0.height == 0 ) { build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:266071: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:07:49 [java] if (this.this$0.component != null ) { build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:268260: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:07:49 [java] if (l != null ) { build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:273951: WARNING - unreachable code build 23-May-2019 13:07:49 [java] var os=System.getProperty$S("os.name"); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:277138: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:07:49 [java] }return (1,o.__CLASS_NAME__ ? o :C$.toMap$O(o)); build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:280273: WARNING - unreachable code build 23-May-2019 13:07:49 [java] if (false && this.isAWT && !this.jc.hasFocus$() ) { build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:280657: WARNING - unreachable code build 23-May-2019 13:07:49 [java] if (false) { build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:282685: WARNING - unreachable code build 23-May-2019 13:07:49 [java] if (false) { build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:284830: WARNING - unreachable code build 23-May-2019 13:07:49 [java] if (false) { build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] core_jalview.js:286794: WARNING - unreachable code build 23-May-2019 13:07:49 [java] if (false && this.thePattern == null ) { build 23-May-2019 13:07:49 [java] ^ build 23-May-2019 13:07:49 [java] build 23-May-2019 13:07:49 [java] 0 error(s), 118 warning(s) build 23-May-2019 13:07:50 [delete] Deleting: /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1/site/swingjs/js/core/tmp.js build 23-May-2019 13:07:50 build 23-May-2019 13:07:50 publish-core-template: build 23-May-2019 13:07:50 [echo] ......Now copying site/jalview_bin_Jalview.html as ${$template.name}__jalview.html with core:"_jalview", added to the Info block. build 23-May-2019 13:07:50 [copy] Copying 1 file to /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1/site build 23-May-2019 13:07:50 build 23-May-2019 13:07:50 build-all-cores: build 23-May-2019 13:07:50 build 23-May-2019 13:07:50 CallToJs: build 23-May-2019 13:07:50 build 23-May-2019 13:07:50 toJs: build 23-May-2019 13:07:50 [echo] Building core file 'jalview' - warnings are OK; "does not exist" is trouble build 23-May-2019 13:07:50 [echo] Reading core class list from file /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1/classlists/jalview.txt build 23-May-2019 13:07:50 build 23-May-2019 13:07:50 call-core: build 23-May-2019 13:07:50 [echo] ......Creating corejalview.js build 23-May-2019 13:07:50 [concat] /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1/site/swingjs/j2s/jalview/datamodel/features/RangeComparator.js does not exist. build 23-May-2019 13:07:50 [echo] ......Generating site/swingjs/j2s/core/corejalview.js build 23-May-2019 13:07:51 [echo] ......Generating site/swingjs/j2s/core/corejalview.z.js build 23-May-2019 13:08:17 [java] corejalview.js:2380: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:08:17 [java] if ((this.eventMask & 4096) != 0) { build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:8461: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:08:17 [java] /*sync org.eclipse.jdt.core.dom.ConditionalExpression*/((prev != null ) ? prev : this); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:8461: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:08:17 [java] /*sync org.eclipse.jdt.core.dom.ConditionalExpression*/((prev != null ) ? prev : this); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:8461: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:08:17 [java] /*sync org.eclipse.jdt.core.dom.ConditionalExpression*/((prev != null ) ? prev : this); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:19836: WARNING - unreachable code build 23-May-2019 13:08:17 [java] return false; build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:22916: WARNING - Suspicious code. The result of the 'getelem' operator is not being used. build 23-May-2019 13:08:17 [java] (($b$[0]=++groupingCount,groupingCount=$b$[0],$b$[0])); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:22922: WARNING - Suspicious code. The result of the 'getelem' operator is not being used. build 23-May-2019 13:08:17 [java] (($b$[0]=++groupingCount,groupingCount=$b$[0],$b$[0])); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:22936: WARNING - Suspicious code. The result of the 'getelem' operator is not being used. build 23-May-2019 13:08:17 [java] (($b$[0]=++this.minExponentDigits,this.minExponentDigits=$b$[0],$b$[0])); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:23546: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] for (right=18; this.digits[right] == "0"; --right) ; build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:52118: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:08:17 [java] if (heavyParent != null ) { build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:57024: WARNING - unreachable code build 23-May-2019 13:08:17 [java] if (false && !this.working ) p$1.updateSystemSelection.apply(this, []); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:57138: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:08:17 [java] if (this.this$0.width == 0 || this.this$0.height == 0 ) { build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:57139: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:08:17 [java] if (this.this$0.component != null ) { build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:60097: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:08:17 [java] if (l != null ) { build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:66896: WARNING - Suspicious code. The result of the 'getprop' operator is not being used. build 23-May-2019 13:08:17 [java] if (!jQuery.ui) try{ (function(e,t){function i(t,n){var r,i,o,u=t.nodeName.toLowerCase();return"area"===u?(r=t.parentNode,i=r.name,!t.href||!i||r.nodeName.toLowerCase()!=="map"?!1:(o=e("img[usemap=#"+i+"]")[0],!!o&&s(o))):(/input|select|textarea|button|object/.test(u)?!t.disabled:"a"===u?t.href||n:n)&&s(t)}function s(t){return e.expr.filters.visible(t)&&!e(t).parents().andSelf().filter(function(){return e.css(this,"visibility")==="hidden"}).length}var n=0,r=/^ui-id-\d+$/;e.ui=e.ui||{};if(e.ui.version)return;e.extend(e.ui,{version:"1.9.2",keyCode:{BACKSPACE:8,COMMA:188,DELETE:46,DOWN:40,END:35,ENTER:13,ESCAPE:27,HOME:36,LEFT:37,NUMPAD_ADD:107,NUMPAD_DECIMAL:110,NUMPAD_DIVIDE:111,NUMPAD_ENTER:108,NUMPAD_MULTIPLY:106,NUMPAD_SUBTRACT:109,PAGE_DOWN:34,PAGE_UP:33,PERIOD:190,RIGHT:39,SPACE:32,TAB:9,UP:38}}),e.fn.extend({_focus:e.fn.focus,focus:function(t,n){return typeof t=="number"?this.each(function(){var r=this;setTimeout(function(){e(r).focus(),n&&n.call(r)},t)}):this._focus.apply(this,arguments)},scrollParent:function(){var t;return e.ui.ie&&/(static|relative)/.test(this.css("position"))||/absolute/.test(this.css("position"))?t=this.parents().filter(function(){return/(relative|absolute|fixed)/.test(e.css(this,"position"))&&/(auto|scroll)/.test(e.css(this,"overflow")+e.css(this,"overflow-y")+e.css(this,"overflow-x"))}).eq(0):t=this.parents().filter(function(){return/(auto|scroll)/.test(e.css(this,"overflow")+e.css(this,"overflow-y")+e.css(this,"overflow-x"))}).eq(0),/fixed/.test(this.css("position"))||!t.length?e(document):t},zIndex:function(n){if(n!==t)return this.css("zIndex",n);if(this.length){var r=e(this[0]),i,s;while(r.length&&r[0]!==document){i=r.css("position");if(i==="absolute"||i==="relative"||i==="fixed"){s=parseInt(r.css("zIndex"),10);if(!isNaN(s)&&s!==0)return s}r=r.parent()}}return 0},uniqueId:function(){return this.each(function(){this.id||(this.id="ui-id-"+ ++n)})},removeUniqueId:function(){return this.each(function(){r.test(this.id)&&e(this).removeAttr("id")})}}),e.extend(e.expr[":"],{data:e.expr.createPseudo?e.expr.createPseudo(function(t){return function(n){return!!e.data(n,t)}}):function(t,n,r){return!!e.data(t,r[3])},focusable:function(t){return i(t,!isNaN(e.attr(t,"tabindex")))},tabbable:function(t){var n=e.attr(t,"tabindex"),r=isNaN(n);return(r||n>=0)&&i(t,!r)}}),e(function(){var t=document.body,n=t.appendChild(n=document.createElement("div"));n.offsetHeight,e.extend(n.style,{minHeight:"100px",height:"auto",padding:0,borderWidth:0}),e.support.minHeight=n.offsetHeight===100,e.support.selectstart="onselectstart"in n,t.removeChild(n).style.display="none"}),e("").outerWidth(1).jquery||e.each(["Width","Height"],function(n,r){function u(t,n,r,s){return e.each(i,function(){n-=parseFloat(e.css(t,"padding"+this))||0,r&&(n-=parseFloat(e.css(t,"border"+this+"Width"))||0),s&&(n-=parseFloat(e.css(t,"margin"+this))||0)}),n}var i=r==="Width"?["Left","Right"]:["Top","Bottom"],s=r.toLowerCase(),o={innerWidth:e.fn.innerWidth,innerHeight:e.fn.innerHeight,outerWidth:e.fn.outerWidth,outerHeight:e.fn.outerHeight};e.fn["inner"+r]=function(n){return n===t?o["inner"+r].call(this):this.each(function(){e(this).css(s,u(this,n)+"px")})},e.fn["outer"+r]=function(t,n){return typeof t!="number"?o["outer"+r].call(this,t):this.each(function(){e(this).css(s,u(this,t,!0,n)+"px")})}}),e("").data("a-b","a").removeData("a-b").data("a-b")&&(e.fn.removeData=function(t){return function(n){return arguments.length?t.call(this,e.camelCase(n)):t.call(this)}}(e.fn.removeData)),function(){var t=/msie ([\w.]+)/.exec(navigator.userAgent.toLowerCase())||[];e.ui.ie=t.length?!0:!1,e.ui.ie6=parseFloat(t[1],10)===6}(),e.fn.extend({disableSelection:function(){return this.bind((e.support.selectstart?"selectstart":"mousedown")+".ui-disableSelection",function(e){e.preventDefault()})},enableSelection:function(){return this.unbind(".ui-disableSelection")}}),e.extend(e.ui,{plugin:{add:function(t,n,r){var i,s=e.ui[t].prototype;for(i in r)s.plugins[i]=s.plugins[i]||[],s.plugins[i].push([n,r[i]])},call:function(e,t,n){var r,i=e.plugins[t];if(!i||!e.element[0].parentNode||e.element[0].parentNode.nodeType===11)return;for(r=0;r0?!0:(t[r]=1,i=t[r]>0,t[r]=0,i)},isOverAxis:function(e,t,n){return e>t&&e 60) { build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:118340: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:08:17 [java] if (parmSet != null ) { build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:118637: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:08:17 [java] if (this.attemptversion1parse) { build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:128462: WARNING - unreachable code build 23-May-2019 13:08:17 [java] return null; build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:129080: WARNING - unreachable code build 23-May-2019 13:08:17 [java] if (false) { build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:129086: WARNING - unreachable code build 23-May-2019 13:08:17 [java] }if (false) { build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:129100: WARNING - unreachable code build 23-May-2019 13:08:17 [java] if (false) { build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:129104: WARNING - unreachable code build 23-May-2019 13:08:17 [java] }if (false) { build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:131954: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:08:17 [java] if (this.featureGroups == null ) { build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:131988: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:08:17 [java] if (rdrw) { build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:133199: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:08:17 [java] if (this.ap != null ) { build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:139211: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:08:17 [java] if ((this.eventMask & 4096) != 0) { build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:144328: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:08:17 [java] /*sync org.eclipse.jdt.core.dom.ConditionalExpression*/((prev != null ) ? prev : this); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:144328: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:08:17 [java] /*sync org.eclipse.jdt.core.dom.ConditionalExpression*/((prev != null ) ? prev : this); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:144328: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:08:17 [java] /*sync org.eclipse.jdt.core.dom.ConditionalExpression*/((prev != null ) ? prev : this); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:163471: WARNING - unreachable code build 23-May-2019 13:08:17 [java] return false; build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:169344: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] for (i=0; (b=p$1.getInt$I.apply(this, [i])) == 0; i++) ; build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:169680: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] for (keep=0; keep < vlen && val[keep] == 0 ; keep++) ; build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:169687: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] for (keep=0; keep < vlen && val[keep] == 0 ; keep++) ; build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:169747: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] for (keep=0; keep < a.length && a[keep] == -1 ; keep++) ; build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:169748: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] for (j=keep; j < a.length && a[j] == 0 ; j++) ; build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:169753: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] for (var i=result.length - 1; ++result[i] == 0; i--) ; build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:169778: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] for (i=mlen - 1; i >= 0 && this.mag[i] == 0 ; i--) ; build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:174490: WARNING - Suspicious code. The result of the 'getelem' operator is not being used. build 23-May-2019 13:08:17 [java] (($b$[0]=++groupingCount,groupingCount=$b$[0],$b$[0])); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:174496: WARNING - Suspicious code. The result of the 'getelem' operator is not being used. build 23-May-2019 13:08:17 [java] (($b$[0]=++groupingCount,groupingCount=$b$[0],$b$[0])); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:174510: WARNING - Suspicious code. The result of the 'getelem' operator is not being used. build 23-May-2019 13:08:17 [java] (($b$[0]=++this.minExponentDigits,this.minExponentDigits=$b$[0],$b$[0])); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:175120: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] for (right=18; this.digits[right] == "0"; --right) ; build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:177117: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] while (this.poll$() != null ); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:186080: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] while (++k <= right && a[k - 1] <= a[k] ); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:186082: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] while (++k <= right && a[k - 1] >= a[k] ); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:186103: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] for (var n=1; (n<<=1) < count; odd=($b$[0] = odd^(1), $b$[0])) ; build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:186134: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] for (var i=right, lo=run[count - 1]; --i >= lo; b[i + bo]=a[i + ao]) ; build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:186231: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] while (a[++less] < pivot1); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:186232: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] while (a[--great] > pivot2); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:186323: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] while (++k <= right && a[k - 1] <= a[k] ); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:186325: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] while (++k <= right && a[k - 1] >= a[k] ); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:186346: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] for (var n=1; (n<<=1) < count; odd=($b$[0] = odd^(1), $b$[0])) ; build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:186377: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] for (var i=right, lo=run[count - 1]; --i >= lo; b[i + bo]=a[i + ao]) ; build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:186474: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] while (a[++less] < pivot1); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:186475: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] while (a[--great] > pivot2); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:186560: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] for (var i=left - 1; ++i <= right; count[a[i] - -32768]++) ; build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:186562: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] while (count[--i] == 0); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:186582: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] while (++k <= right && a[k - 1] <= a[k] ); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:186584: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] while (++k <= right && a[k - 1] >= a[k] ); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:186605: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] for (var n=1; (n<<=1) < count; odd=($b$[0] = odd^(1), $b$[0])) ; build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:186636: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] for (var i=right, lo=run[count - 1]; --i >= lo; b[i + bo]=a[i + ao]) ; build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:186733: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] while (a[++less] < pivot1); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:186734: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] while (a[--great] > pivot2); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:186819: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] for (var i=left - 1; ++i <= right; count[(a[i]).$c()]++) ; build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:186821: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] while (count[--i] == 0); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:186841: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] while (++k <= right && a[k - 1] <= a[k] ); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:186843: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] while (++k <= right && a[k - 1] >= a[k] ); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:186864: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] for (var n=1; (n<<=1) < count; odd=($b$[0] = odd^(1), $b$[0])) ; build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:186895: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] for (var i=right, lo=run[count - 1]; --i >= lo; b[i + bo]=a[i + ao]) ; build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:186992: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] while (a[++less] < pivot1); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:186993: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] while (a[--great] > pivot2); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:187078: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] for (var i=left - 1; ++i <= right; count[a[i] - -128]++) ; build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:187080: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] while (count[--i] == 0); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:187142: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] while (++k <= right && a[k - 1] <= a[k] ); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:187144: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] while (++k <= right && a[k - 1] >= a[k] ); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:187165: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] for (var n=1; (n<<=1) < count; odd=($b$[0] = odd^(1), $b$[0])) ; build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:187196: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] for (var i=right, lo=run[count - 1]; --i >= lo; b[i + bo]=a[i + ao]) ; build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:187293: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] while (a[++less] < pivot1 ); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:187294: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] while (a[--great] > pivot2 ); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:187419: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] while (++k <= right && a[k - 1] <= a[k] ); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:187421: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] while (++k <= right && a[k - 1] >= a[k] ); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:187442: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] for (var n=1; (n<<=1) < count; odd=($b$[0] = odd^(1), $b$[0])) ; build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:187473: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] for (var i=right, lo=run[count - 1]; --i >= lo; b[i + bo]=a[i + ao]) ; build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:187570: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] while (a[++less] < pivot1 ); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:187571: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] while (a[--great] > pivot2 ); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:188120: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:08:17 [java] if (field == 5) { build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:200338: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:08:17 [java] if (sm != null ) { build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:200491: WARNING - unreachable code build 23-May-2019 13:08:17 [java] return this.e.submit$Runnable(task); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:204623: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:08:17 [java] if(string.indexOf('\\') < 0 && string.indexOf ('$')<0) ; // ')) build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:204625: WARNING - unreachable code build 23-May-2019 13:08:17 [java] var res= Clazz_new_(StringBuffer, [string.length*2]); build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:214422: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:08:17 [java] } else if (!this.opened) { build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:220043: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:08:17 [java] if (heavyParent != null ) { build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:224187: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:08:17 [java] if (this.insideComponent == null ) { build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:235088: WARNING - unreachable code build 23-May-2019 13:08:17 [java] return null; build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] corejalview.js:238909: WARNING - Suspicious code. The result of the 'getprop' operator is not being used. build 23-May-2019 13:08:17 [java] if (!jQuery.ui) try{ (function(e,t){function i(t,n){var r,i,o,u=t.nodeName.toLowerCase();return"area"===u?(r=t.parentNode,i=r.name,!t.href||!i||r.nodeName.toLowerCase()!=="map"?!1:(o=e("img[usemap=#"+i+"]")[0],!!o&&s(o))):(/input|select|textarea|button|object/.test(u)?!t.disabled:"a"===u?t.href||n:n)&&s(t)}function s(t){return e.expr.filters.visible(t)&&!e(t).parents().andSelf().filter(function(){return e.css(this,"visibility")==="hidden"}).length}var n=0,r=/^ui-id-\d+$/;e.ui=e.ui||{};if(e.ui.version)return;e.extend(e.ui,{version:"1.9.2",keyCode:{BACKSPACE:8,COMMA:188,DELETE:46,DOWN:40,END:35,ENTER:13,ESCAPE:27,HOME:36,LEFT:37,NUMPAD_ADD:107,NUMPAD_DECIMAL:110,NUMPAD_DIVIDE:111,NUMPAD_ENTER:108,NUMPAD_MULTIPLY:106,NUMPAD_SUBTRACT:109,PAGE_DOWN:34,PAGE_UP:33,PERIOD:190,RIGHT:39,SPACE:32,TAB:9,UP:38}}),e.fn.extend({_focus:e.fn.focus,focus:function(t,n){return typeof t=="number"?this.each(function(){var r=this;setTimeout(function(){e(r).focus(),n&&n.call(r)},t)}):this._focus.apply(this,arguments)},scrollParent:function(){var t;return e.ui.ie&&/(static|relative)/.test(this.css("position"))||/absolute/.test(this.css("position"))?t=this.parents().filter(function(){return/(relative|absolute|fixed)/.test(e.css(this,"position"))&&/(auto|scroll)/.test(e.css(this,"overflow")+e.css(this,"overflow-y")+e.css(this,"overflow-x"))}).eq(0):t=this.parents().filter(function(){return/(auto|scroll)/.test(e.css(this,"overflow")+e.css(this,"overflow-y")+e.css(this,"overflow-x"))}).eq(0),/fixed/.test(this.css("position"))||!t.length?e(document):t},zIndex:function(n){if(n!==t)return this.css("zIndex",n);if(this.length){var r=e(this[0]),i,s;while(r.length&&r[0]!==document){i=r.css("position");if(i==="absolute"||i==="relative"||i==="fixed"){s=parseInt(r.css("zIndex"),10);if(!isNaN(s)&&s!==0)return s}r=r.parent()}}return 0},uniqueId:function(){return this.each(function(){this.id||(this.id="ui-id-"+ ++n)})},removeUniqueId:function(){return this.each(function(){r.test(this.id)&&e(this).removeAttr("id")})}}),e.extend(e.expr[":"],{data:e.expr.createPseudo?e.expr.createPseudo(function(t){return function(n){return!!e.data(n,t)}}):function(t,n,r){return!!e.data(t,r[3])},focusable:function(t){return i(t,!isNaN(e.attr(t,"tabindex")))},tabbable:function(t){var n=e.attr(t,"tabindex"),r=isNaN(n);return(r||n>=0)&&i(t,!r)}}),e(function(){var t=document.body,n=t.appendChild(n=document.createElement("div"));n.offsetHeight,e.extend(n.style,{minHeight:"100px",height:"auto",padding:0,borderWidth:0}),e.support.minHeight=n.offsetHeight===100,e.support.selectstart="onselectstart"in n,t.removeChild(n).style.display="none"}),e("").outerWidth(1).jquery||e.each(["Width","Height"],function(n,r){function u(t,n,r,s){return e.each(i,function(){n-=parseFloat(e.css(t,"padding"+this))||0,r&&(n-=parseFloat(e.css(t,"border"+this+"Width"))||0),s&&(n-=parseFloat(e.css(t,"margin"+this))||0)}),n}var i=r==="Width"?["Left","Right"]:["Top","Bottom"],s=r.toLowerCase(),o={innerWidth:e.fn.innerWidth,innerHeight:e.fn.innerHeight,outerWidth:e.fn.outerWidth,outerHeight:e.fn.outerHeight};e.fn["inner"+r]=function(n){return n===t?o["inner"+r].call(this):this.each(function(){e(this).css(s,u(this,n)+"px")})},e.fn["outer"+r]=function(t,n){return typeof t!="number"?o["outer"+r].call(this,t):this.each(function(){e(this).css(s,u(this,t,!0,n)+"px")})}}),e("").data("a-b","a").removeData("a-b").data("a-b")&&(e.fn.removeData=function(t){return function(n){return arguments.length?t.call(this,e.camelCase(n)):t.call(this)}}(e.fn.removeData)),function(){var t=/msie ([\w.]+)/.exec(navigator.userAgent.toLowerCase())||[];e.ui.ie=t.length?!0:!1,e.ui.ie6=parseFloat(t[1],10)===6}(),e.fn.extend({disableSelection:function(){return this.bind((e.support.selectstart?"selectstart":"mousedown")+".ui-disableSelection",function(e){e.preventDefault()})},enableSelection:function(){return this.unbind(".ui-disableSelection")}}),e.extend(e.ui,{plugin:{add:function(t,n,r){var i,s=e.ui[t].prototype;for(i in r)s.plugins[i]=s.plugins[i]||[],s.plugins[i].push([n,r[i]])},call:function(e,t,n){var r,i=e.plugins[t];if(!i||!e.element[0].parentNode||e.element[0].parentNode.nodeType===11)return;for(r=0;r0?!0:(t[r]=1,i=t[r]>0,t[r]=0,i)},isOverAxis:function(e,t,n){return e>t&&e= 0 ) { build 23-May-2019 13:08:17 [java] ^ build 23-May-2019 13:08:17 [java] build 23-May-2019 13:08:17 [java] 0 error(s), 105 warning(s) build 23-May-2019 13:08:18 [delete] Deleting: /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1/site/swingjs/js/core/tmp.js build 23-May-2019 13:08:18 build 23-May-2019 13:08:18 publish-core-template: build 23-May-2019 13:08:18 [echo] ......Now copying site/jalview_bin_Jalview.html as ${$template.name}_jalview.html with core:"jalview", added to the Info block. build 23-May-2019 13:08:18 [copy] Copying 1 file to /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1/site build 23-May-2019 13:08:18 build 23-May-2019 13:08:18 CallToJs: build 23-May-2019 13:08:18 build 23-May-2019 13:08:18 toJs: build 23-May-2019 13:08:18 [echo] Building core file 'jvexamplefile' - warnings are OK; "does not exist" is trouble build 23-May-2019 13:08:18 [echo] Reading core class list from file /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1/classlists/jvexamplefile.txt build 23-May-2019 13:08:18 build 23-May-2019 13:08:18 call-core: build 23-May-2019 13:08:18 [echo] ......Creating corejvexamplefile.js build 23-May-2019 13:08:18 [concat] /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1/site/swingjs/j2s/java/net/HttpsURLConnection.js does not exist. build 23-May-2019 13:08:18 [concat] /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1/site/swingjs/j2s/swingjs/xml/JSXMLStreamReader.jscom/stevesoft/pat/Any.js does not exist. build 23-May-2019 13:08:18 [concat] /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1/site/swingjs/j2s/swingjs/xml/JSXMLStreamReader.jscom/stevesoft/pat/Boundary.js does not exist. build 23-May-2019 13:08:18 [echo] ......Generating site/swingjs/j2s/core/corejvexamplefile.js build 23-May-2019 13:08:18 [echo] ......Generating site/swingjs/j2s/core/corejvexamplefile.z.js build 23-May-2019 13:09:00 [java] corejvexamplefile.js:2380: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:09:00 [java] if ((this.eventMask & 4096) != 0) { build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:8461: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:09:00 [java] /*sync org.eclipse.jdt.core.dom.ConditionalExpression*/((prev != null ) ? prev : this); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:8461: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:09:00 [java] /*sync org.eclipse.jdt.core.dom.ConditionalExpression*/((prev != null ) ? prev : this); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:8461: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:09:00 [java] /*sync org.eclipse.jdt.core.dom.ConditionalExpression*/((prev != null ) ? prev : this); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:19836: WARNING - unreachable code build 23-May-2019 13:09:00 [java] return false; build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:22916: WARNING - Suspicious code. The result of the 'getelem' operator is not being used. build 23-May-2019 13:09:00 [java] (($b$[0]=++groupingCount,groupingCount=$b$[0],$b$[0])); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:22922: WARNING - Suspicious code. The result of the 'getelem' operator is not being used. build 23-May-2019 13:09:00 [java] (($b$[0]=++groupingCount,groupingCount=$b$[0],$b$[0])); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:22936: WARNING - Suspicious code. The result of the 'getelem' operator is not being used. build 23-May-2019 13:09:00 [java] (($b$[0]=++this.minExponentDigits,this.minExponentDigits=$b$[0],$b$[0])); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:23546: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] for (right=18; this.digits[right] == "0"; --right) ; build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:52118: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:09:00 [java] if (heavyParent != null ) { build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:57024: WARNING - unreachable code build 23-May-2019 13:09:00 [java] if (false && !this.working ) p$1.updateSystemSelection.apply(this, []); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:57138: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:09:00 [java] if (this.this$0.width == 0 || this.this$0.height == 0 ) { build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:57139: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:09:00 [java] if (this.this$0.component != null ) { build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:60097: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:09:00 [java] if (l != null ) { build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:66896: WARNING - Suspicious code. The result of the 'getprop' operator is not being used. build 23-May-2019 13:09:00 [java] if (!jQuery.ui) try{ (function(e,t){function i(t,n){var r,i,o,u=t.nodeName.toLowerCase();return"area"===u?(r=t.parentNode,i=r.name,!t.href||!i||r.nodeName.toLowerCase()!=="map"?!1:(o=e("img[usemap=#"+i+"]")[0],!!o&&s(o))):(/input|select|textarea|button|object/.test(u)?!t.disabled:"a"===u?t.href||n:n)&&s(t)}function s(t){return e.expr.filters.visible(t)&&!e(t).parents().andSelf().filter(function(){return e.css(this,"visibility")==="hidden"}).length}var n=0,r=/^ui-id-\d+$/;e.ui=e.ui||{};if(e.ui.version)return;e.extend(e.ui,{version:"1.9.2",keyCode:{BACKSPACE:8,COMMA:188,DELETE:46,DOWN:40,END:35,ENTER:13,ESCAPE:27,HOME:36,LEFT:37,NUMPAD_ADD:107,NUMPAD_DECIMAL:110,NUMPAD_DIVIDE:111,NUMPAD_ENTER:108,NUMPAD_MULTIPLY:106,NUMPAD_SUBTRACT:109,PAGE_DOWN:34,PAGE_UP:33,PERIOD:190,RIGHT:39,SPACE:32,TAB:9,UP:38}}),e.fn.extend({_focus:e.fn.focus,focus:function(t,n){return typeof t=="number"?this.each(function(){var r=this;setTimeout(function(){e(r).focus(),n&&n.call(r)},t)}):this._focus.apply(this,arguments)},scrollParent:function(){var t;return e.ui.ie&&/(static|relative)/.test(this.css("position"))||/absolute/.test(this.css("position"))?t=this.parents().filter(function(){return/(relative|absolute|fixed)/.test(e.css(this,"position"))&&/(auto|scroll)/.test(e.css(this,"overflow")+e.css(this,"overflow-y")+e.css(this,"overflow-x"))}).eq(0):t=this.parents().filter(function(){return/(auto|scroll)/.test(e.css(this,"overflow")+e.css(this,"overflow-y")+e.css(this,"overflow-x"))}).eq(0),/fixed/.test(this.css("position"))||!t.length?e(document):t},zIndex:function(n){if(n!==t)return this.css("zIndex",n);if(this.length){var r=e(this[0]),i,s;while(r.length&&r[0]!==document){i=r.css("position");if(i==="absolute"||i==="relative"||i==="fixed"){s=parseInt(r.css("zIndex"),10);if(!isNaN(s)&&s!==0)return s}r=r.parent()}}return 0},uniqueId:function(){return this.each(function(){this.id||(this.id="ui-id-"+ ++n)})},removeUniqueId:function(){return this.each(function(){r.test(this.id)&&e(this).removeAttr("id")})}}),e.extend(e.expr[":"],{data:e.expr.createPseudo?e.expr.createPseudo(function(t){return function(n){return!!e.data(n,t)}}):function(t,n,r){return!!e.data(t,r[3])},focusable:function(t){return i(t,!isNaN(e.attr(t,"tabindex")))},tabbable:function(t){var n=e.attr(t,"tabindex"),r=isNaN(n);return(r||n>=0)&&i(t,!r)}}),e(function(){var t=document.body,n=t.appendChild(n=document.createElement("div"));n.offsetHeight,e.extend(n.style,{minHeight:"100px",height:"auto",padding:0,borderWidth:0}),e.support.minHeight=n.offsetHeight===100,e.support.selectstart="onselectstart"in n,t.removeChild(n).style.display="none"}),e("").outerWidth(1).jquery||e.each(["Width","Height"],function(n,r){function u(t,n,r,s){return e.each(i,function(){n-=parseFloat(e.css(t,"padding"+this))||0,r&&(n-=parseFloat(e.css(t,"border"+this+"Width"))||0),s&&(n-=parseFloat(e.css(t,"margin"+this))||0)}),n}var i=r==="Width"?["Left","Right"]:["Top","Bottom"],s=r.toLowerCase(),o={innerWidth:e.fn.innerWidth,innerHeight:e.fn.innerHeight,outerWidth:e.fn.outerWidth,outerHeight:e.fn.outerHeight};e.fn["inner"+r]=function(n){return n===t?o["inner"+r].call(this):this.each(function(){e(this).css(s,u(this,n)+"px")})},e.fn["outer"+r]=function(t,n){return typeof t!="number"?o["outer"+r].call(this,t):this.each(function(){e(this).css(s,u(this,t,!0,n)+"px")})}}),e("").data("a-b","a").removeData("a-b").data("a-b")&&(e.fn.removeData=function(t){return function(n){return arguments.length?t.call(this,e.camelCase(n)):t.call(this)}}(e.fn.removeData)),function(){var t=/msie ([\w.]+)/.exec(navigator.userAgent.toLowerCase())||[];e.ui.ie=t.length?!0:!1,e.ui.ie6=parseFloat(t[1],10)===6}(),e.fn.extend({disableSelection:function(){return this.bind((e.support.selectstart?"selectstart":"mousedown")+".ui-disableSelection",function(e){e.preventDefault()})},enableSelection:function(){return this.unbind(".ui-disableSelection")}}),e.extend(e.ui,{plugin:{add:function(t,n,r){var i,s=e.ui[t].prototype;for(i in r)s.plugins[i]=s.plugins[i]||[],s.plugins[i].push([n,r[i]])},call:function(e,t,n){var r,i=e.plugins[t];if(!i||!e.element[0].parentNode||e.element[0].parentNode.nodeType===11)return;for(r=0;r0?!0:(t[r]=1,i=t[r]>0,t[r]=0,i)},isOverAxis:function(e,t,n){return e>t&&e 60) { build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:146979: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:09:00 [java] if (parmSet != null ) { build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:147276: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:09:00 [java] if (this.attemptversion1parse) { build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:158946: WARNING - unreachable code build 23-May-2019 13:09:00 [java] return null; build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:159594: WARNING - unreachable code build 23-May-2019 13:09:00 [java] if (false) { build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:159600: WARNING - unreachable code build 23-May-2019 13:09:00 [java] }if (false) { build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:159614: WARNING - unreachable code build 23-May-2019 13:09:00 [java] if (false) { build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:159618: WARNING - unreachable code build 23-May-2019 13:09:00 [java] }if (false) { build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:162608: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:09:00 [java] if (this.featureGroups == null ) { build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:162642: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:09:00 [java] if (rdrw) { build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:163905: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:09:00 [java] if (this.ap != null ) { build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:163998: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:09:00 [java] if (this.ap != null ) { build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:164587: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:09:00 [java] if (expectedCdsLength != cdspos) { build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:191751: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] for (i=0; (b=p$1.getInt$I.apply(this, [i])) == 0; i++) ; build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:192087: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] for (keep=0; keep < vlen && val[keep] == 0 ; keep++) ; build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:192094: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] for (keep=0; keep < vlen && val[keep] == 0 ; keep++) ; build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:192154: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] for (keep=0; keep < a.length && a[keep] == -1 ; keep++) ; build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:192155: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] for (j=keep; j < a.length && a[j] == 0 ; j++) ; build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:192160: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] for (var i=result.length - 1; ++result[i] == 0; i--) ; build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:192185: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] for (i=mlen - 1; i >= 0 && this.mag[i] == 0 ; i--) ; build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:197872: WARNING - Suspicious code. The result of the 'getelem' operator is not being used. build 23-May-2019 13:09:00 [java] (($b$[0]=++groupingCount,groupingCount=$b$[0],$b$[0])); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:197878: WARNING - Suspicious code. The result of the 'getelem' operator is not being used. build 23-May-2019 13:09:00 [java] (($b$[0]=++groupingCount,groupingCount=$b$[0],$b$[0])); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:197892: WARNING - Suspicious code. The result of the 'getelem' operator is not being used. build 23-May-2019 13:09:00 [java] (($b$[0]=++this.minExponentDigits,this.minExponentDigits=$b$[0],$b$[0])); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:198502: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] for (right=18; this.digits[right] == "0"; --right) ; build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:199652: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] while (this.poll$() != null ); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:201982: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] while (++k <= right && a[k - 1] <= a[k] ); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:201984: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] while (++k <= right && a[k - 1] >= a[k] ); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:202005: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] for (var n=1; (n<<=1) < count; odd=($b$[0] = odd^(1), $b$[0])) ; build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:202036: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] for (var i=right, lo=run[count - 1]; --i >= lo; b[i + bo]=a[i + ao]) ; build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:202133: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] while (a[++less] < pivot1); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:202134: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] while (a[--great] > pivot2); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:202225: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] while (++k <= right && a[k - 1] <= a[k] ); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:202227: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] while (++k <= right && a[k - 1] >= a[k] ); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:202248: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] for (var n=1; (n<<=1) < count; odd=($b$[0] = odd^(1), $b$[0])) ; build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:202279: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] for (var i=right, lo=run[count - 1]; --i >= lo; b[i + bo]=a[i + ao]) ; build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:202376: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] while (a[++less] < pivot1); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:202377: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] while (a[--great] > pivot2); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:202462: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] for (var i=left - 1; ++i <= right; count[a[i] - -32768]++) ; build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:202464: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] while (count[--i] == 0); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:202484: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] while (++k <= right && a[k - 1] <= a[k] ); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:202486: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] while (++k <= right && a[k - 1] >= a[k] ); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:202507: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] for (var n=1; (n<<=1) < count; odd=($b$[0] = odd^(1), $b$[0])) ; build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:202538: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] for (var i=right, lo=run[count - 1]; --i >= lo; b[i + bo]=a[i + ao]) ; build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:202635: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] while (a[++less] < pivot1); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:202636: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] while (a[--great] > pivot2); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:202721: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] for (var i=left - 1; ++i <= right; count[(a[i]).$c()]++) ; build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:202723: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] while (count[--i] == 0); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:202743: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] while (++k <= right && a[k - 1] <= a[k] ); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:202745: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] while (++k <= right && a[k - 1] >= a[k] ); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:202766: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] for (var n=1; (n<<=1) < count; odd=($b$[0] = odd^(1), $b$[0])) ; build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:202797: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] for (var i=right, lo=run[count - 1]; --i >= lo; b[i + bo]=a[i + ao]) ; build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:202894: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] while (a[++less] < pivot1); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:202895: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] while (a[--great] > pivot2); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:202980: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] for (var i=left - 1; ++i <= right; count[a[i] - -128]++) ; build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:202982: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] while (count[--i] == 0); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:203044: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] while (++k <= right && a[k - 1] <= a[k] ); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:203046: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] while (++k <= right && a[k - 1] >= a[k] ); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:203067: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] for (var n=1; (n<<=1) < count; odd=($b$[0] = odd^(1), $b$[0])) ; build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:203098: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] for (var i=right, lo=run[count - 1]; --i >= lo; b[i + bo]=a[i + ao]) ; build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:203195: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] while (a[++less] < pivot1 ); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:203196: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] while (a[--great] > pivot2 ); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:203321: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] while (++k <= right && a[k - 1] <= a[k] ); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:203323: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] while (++k <= right && a[k - 1] >= a[k] ); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:203344: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] for (var n=1; (n<<=1) < count; odd=($b$[0] = odd^(1), $b$[0])) ; build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:203375: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] for (var i=right, lo=run[count - 1]; --i >= lo; b[i + bo]=a[i + ao]) ; build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:203472: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] while (a[++less] < pivot1 ); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:203473: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] while (a[--great] > pivot2 ); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:205378: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:09:00 [java] if (field == 5) { build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:213263: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:09:00 [java] if (sm != null ) { build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:213416: WARNING - unreachable code build 23-May-2019 13:09:00 [java] return this.e.submit$Runnable(task); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:217600: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] if(string.indexOf('\\') < 0 && string.indexOf ('$')<0) ; // ')) build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:217602: WARNING - unreachable code build 23-May-2019 13:09:00 [java] var res= Clazz_new_(StringBuffer, [string.length*2]); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:226695: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:09:00 [java] } else if (!this.opened) { build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:232609: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:09:00 [java] if (this.editorRemover == null ) { build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:235110: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:09:00 [java] if (heavyParent != null ) { build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:239017: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:09:00 [java] if (this.insideComponent == null ) { build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:244841: WARNING - unreachable code build 23-May-2019 13:09:00 [java] if (false && !this.working ) p$1.updateSystemSelection.apply(this, []); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:244955: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:09:00 [java] if (this.this$0.width == 0 || this.this$0.height == 0 ) { build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:244956: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:09:00 [java] if (this.this$0.component != null ) { build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:248197: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] while (iterator.getAttribute$java_text_AttributedCharacterIterator_Attribute(field) == null && iterator.next$() != "\uffff" ); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:248219: WARNING - If this if/for/while really shouldnt have a body, use {} build 23-May-2019 13:09:00 [java] while (iterator.getAttribute$java_text_AttributedCharacterIterator_Attribute(field) == null && iterator.next$() != "\uffff" ); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:249010: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:09:00 [java] if (l != null ) { build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:254596: WARNING - unreachable code build 23-May-2019 13:09:00 [java] }}if (false) { build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:259422: WARNING - unreachable code build 23-May-2019 13:09:00 [java] var os=System.getProperty$S("os.name"); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:294249: WARNING - Suspicious code. The result of the 'getelem' operator is not being used. build 23-May-2019 13:09:00 [java] (($s$[0]=++this.lineCurrent,this.lineCurrent=$s$[0],$s$[0])); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:334234: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:09:00 [java] C$.strJavaVendor="Java2Script " + ((this, C$).isWebGL ? "(WebGL)" : "(HTML5)"); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:338776: WARNING - unreachable code build 23-May-2019 13:09:00 [java] $I$(11).currentThread$().wait$J(100); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:348157: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:09:00 [java] }return (1,o.__CLASS_NAME__ ? o :C$.toMap$O(o)); build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:352362: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:09:00 [java] }} else if (prop == "ancestor") { build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:352363: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 23-May-2019 13:09:00 [java] } else if ("title" == prop || prop == "closable" || prop == "iconable" || prop == "maximizable" ) { build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:360873: WARNING - unreachable code build 23-May-2019 13:09:00 [java] if (false && this.isAWT && !this.jc.hasFocus$() ) { build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] corejvexamplefile.js:362966: WARNING - unreachable code build 23-May-2019 13:09:00 [java] if (false && data.indexOf$S("= 0 ) { build 23-May-2019 13:09:00 [java] ^ build 23-May-2019 13:09:00 [java] build 23-May-2019 13:09:00 [java] 0 error(s), 121 warning(s) build 23-May-2019 13:09:01 [delete] Deleting: /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1/site/swingjs/js/core/tmp.js build 23-May-2019 13:09:01 build 23-May-2019 13:09:01 publish-core-template: build 23-May-2019 13:09:01 [echo] ......Now copying site/jalview_bin_Jalview.html as ${$template.name}_jvexamplefile.html with core:"jvexamplefile", added to the Info block. build 23-May-2019 13:09:01 [copy] Copying 1 file to /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1/site build 23-May-2019 13:09:01 build 23-May-2019 13:09:01 build-site: build 23-May-2019 13:09:02 [tar] Building tar: /srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1/site.tar.gz build 23-May-2019 13:09:05 build 23-May-2019 13:09:05 BUILD SUCCESSFUL build 23-May-2019 13:09:05 Total time: 3 minutes 8 seconds simple 23-May-2019 13:09:06 Finished task 'run jalviewjs build' with result: Success simple 23-May-2019 13:09:06 Running post build plugin 'NCover Results Collector' simple 23-May-2019 13:09:06 Running post build plugin 'Artifact Copier' simple 23-May-2019 13:09:06 Publishing an artifact: jalviewjs-site.tar.gz simple 23-May-2019 13:09:06 Finished publishing of artifact Shared artifact: [jalviewjs-site.tar.gz], pattern: [site.tar.gz] anchored at: [./] in 31.74 ms simple 23-May-2019 13:09:06 Publishing an artifact: jalviewjs simple 23-May-2019 13:09:07 Finished publishing of artifact Shared artifact: [jalviewjs], pattern: [**/*] anchored at: [site/] in 900.6 ms simple 23-May-2019 13:09:07 Running post build plugin 'Artifactory Release Management Staging' simple 23-May-2019 13:09:07 Running post build plugin 'Artifactory Build Info Copier' simple 23-May-2019 13:09:07 Running post build plugin 'Artifactory Gradle Properties Info Copier' simple 23-May-2019 13:09:07 Running post build plugin 'npm Cache Cleanup' simple 23-May-2019 13:09:07 Running post build plugin 'Clover Results Collector' simple 23-May-2019 13:09:07 Running post build plugin 'Docker Container Cleanup' simple 23-May-2019 13:09:07 Successfully removed working directory at '/srv/bamboo/bamboo-home/xml-data/build-dir/JB-JB4-JOB1' simple 23-May-2019 13:09:07 Finalising the build... simple 23-May-2019 13:09:07 Stopping timer. simple 23-May-2019 13:09:07 Build JB-JB4-JOB1-1 completed. simple 23-May-2019 13:09:07 Running on server: post build plugin 'NCover Results Collector' simple 23-May-2019 13:09:07 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 23-May-2019 13:09:07 Running on server: post build plugin 'Clover Delta Calculator' simple 23-May-2019 13:09:07 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 23-May-2019 13:09:07 All post build plugins have finished simple 23-May-2019 13:09:07 Generating build results summary... simple 23-May-2019 13:09:07 Saving build results to disk... simple 23-May-2019 13:09:07 Logging substituted variables... simple 23-May-2019 13:09:07 Indexing build results... simple 23-May-2019 13:09:07 Finished building JB-JB4-JOB1-1.