simple 08-Jun-2020 23:01:57 Build Jalview Builds - jalviewjs - Jalview-JS-JAL-3253-applet - Default Job #186 (JB-JB3-JOB1-186) started building on agent Default Agent simple 08-Jun-2020 23:01:57 simple 08-Jun-2020 23:01:57 Build working directory is /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JB3-JOB1 simple 08-Jun-2020 23:01:57 Executing build Jalview Builds - jalviewjs - Jalview-JS-JAL-3253-applet - Default Job #186 (JB-JB3-JOB1-186) simple 08-Jun-2020 23:01:57 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' simple 08-Jun-2020 23:01:57 Checking out into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JB3-JOB1 simple 08-Jun-2020 23:01:57 Updating source code to revision: d18e36d8f4a511e82af3564647b3154267b177c6 simple 08-Jun-2020 23:01:57 Fetching 'refs/heads/Jalview-JS/JAL-3253-applet' from 'http://source.jalview.org/git/jalview.git'. simple 08-Jun-2020 23:01:57 Checking out revision d18e36d8f4a511e82af3564647b3154267b177c6. simple 08-Jun-2020 23:01:57 Creating local git repository in '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JB3-JOB1/.git'. simple 08-Jun-2020 23:01:57 Cloning into '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JB3-JOB1'... simple 08-Jun-2020 23:01:57 done. simple 08-Jun-2020 23:02:07 Branch Jalview-JS/JAL-3253-applet set up to track remote branch Jalview-JS/JAL-3253-applet from origin. simple 08-Jun-2020 23:02:07 Switched to a new branch 'Jalview-JS/JAL-3253-applet' simple 08-Jun-2020 23:02:07 Updated source code to revision: d18e36d8f4a511e82af3564647b3154267b177c6 simple 08-Jun-2020 23:02:07 Finished task 'Checkout Default Repository' with result: Success simple 08-Jun-2020 23:02:07 Running pre-build action: VCS Version Collector simple 08-Jun-2020 23:02:07 Running pre-build action: Artifactory Release Staging simple 08-Jun-2020 23:02:07 Starting task 'run jalviewjs build' of type 'com.atlassian.bamboo.plugins.ant:task.builder.ant' command 08-Jun-2020 23:02:07 Beginning to execute external process for build 'Jalview Builds - jalviewjs - Jalview-JS-JAL-3253-applet - Default Job #186 (JB-JB3-JOB1-186)'\n ... running command line: \n/home/bamboo/buildtools/x11-ant/bin/ant -Djava.io.tmpdir=/home/bamboo/latest/temp/JB-JB3-JOB1 -f build.xml build-site\n ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JB3-JOB1\n ... using extra environment variables: \nbamboo_planRepository_1_branch=Jalview-JS/JAL-3253-applet\nbamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr\nbamboo_planRepository_1_branchDisplayName=Jalview-JS/JAL-3253-applet\nbamboo_repository_revision_number=d18e36d8f4a511e82af3564647b3154267b177c6\nbamboo_resultsUrl=https://builds.jalview.org/browse/JB-JB3-JOB1-186\nbamboo_repository_9175067_git_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JB3-JOB1\nbamboo_planRepository_1_name=Jalview Git\nbamboo_buildKey=JB-JB3-JOB1\nbamboo_capability_system_jdk_JDK_1_8_0_171=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.171-8.b10.el7_5.x86_64\nbamboo_shortPlanName=Jalview-JS-JAL-3253-applet\nbamboo_planRepository_name=Jalview Git\nbamboo_buildNumber=186\nbamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse\nbamboo_capability_system_jdk_OpenJDK_11_JRE_only=/home/bamboo/buildtools/jvm/jre11_x64_linux\nbamboo_shortJobName=Default Job\nbamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-JB3-JOB1-186\nbamboo_planRepository_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_agentId=196609\nbamboo_planName=Jalview Builds - jalviewjs - Jalview-JS-JAL-3253-applet\nbamboo_repository_9175067_name=Jalview Git\nbamboo_shortPlanKey=JB3\nbamboo_shortJobKey=JOB1\nbamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/OpenJDK11/jdk-11\nbamboo_planRepository_revision=d18e36d8f4a511e82af3564647b3154267b177c6\nbamboo_buildTimeStamp=2020-06-08T23:01:57.488+01:00\nbamboo_repository_previous_revision_number=6a9d521b9b7fdfc19d90f998c9a8d4d98ab872c0\nbamboo_planRepository_previousRevision=6a9d521b9b7fdfc19d90f998c9a8d4d98ab872c0\nbamboo_repository_9175067_git_branch=Jalview-JS/JAL-3253-applet\nbamboo_repository_git_branch=Jalview-JS/JAL-3253-applet\nbamboo_buildResultKey=JB-JB3-JOB1-186\nbamboo_repository_branch_name=Jalview-JS/JAL-3253-applet\nbamboo_repository_9175067_git_username=\nbamboo_buildPlanName=Jalview Builds - jalviewjs - Jalview-JS-JAL-3253-applet - Default Job\nbamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11\nbamboo_repository_9175067_revision_number=d18e36d8f4a511e82af3564647b3154267b177c6\nbamboo_planRepository_1_revision=d18e36d8f4a511e82af3564647b3154267b177c6\nbamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant\nbamboo_repository_9175067_branch_name=Jalview-JS/JAL-3253-applet\nbamboo_repository_name=Jalview Git\nJAVA_HOME=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.171-8.b10.el7_5.x86_64\nbamboo_buildFailed=false\nANT_HOME=/home/bamboo/buildtools/x11-ant\nbamboo_planRepository_branch=Jalview-JS/JAL-3253-applet\nbamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609\nbamboo_capability_system_git_executable=/bin/git\nbamboo_repository_git_username=\nbamboo_planRepository_1_previousRevision=6a9d521b9b7fdfc19d90f998c9a8d4d98ab872c0\nbamboo_repository_9175067_previous_revision_number=6a9d521b9b7fdfc19d90f998c9a8d4d98ab872c0\nbamboo_planRepository_branchDisplayName=Jalview-JS/JAL-3253-applet\nbamboo_planRepository_1_type=gitv2\nbamboo_planRepository_branchName=Jalview-JS/JAL-3253-applet\nbamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11\nbamboo_capability_system_builderivy_Ivy=/usr\nbamboo_capability_system_jdk_JDK=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.171-8.b10.el7_5.x86_64\nbamboo_plan_storageTag=plan-8978485\nbamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle\nbamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache\nbamboo_planRepository_1_username=\nbamboo_planRepository_type=gitv2\nbamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache\nbamboo_repository_git_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_capability_system_builder_ant_Ant=/usr/share/ant\nbamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven\nbamboo_tmp_directory=/srv/bamboo/bamboo-home/temp\nbamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JB3-JOB1\nbamboo_planKey=JB-JB3\nbamboo_planRepository_1_repositoryUrl=http://source.jalview.org/git/jalview.git\nbamboo_planRepository_username=\nbamboo_capability_system_jdk_JDK_1_8=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.171-8.b10.el7_5.x86_64\nbamboo_planRepository_1_branchName=Jalview-JS/JAL-3253-applet\nPATH=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.171-8.b10.el7_5.x86_64/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin\n build 08-Jun-2020 23:02:10 Buildfile: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JB3-JOB1/build.xml build 08-Jun-2020 23:02:11 build 08-Jun-2020 23:02:11 init: build 08-Jun-2020 23:02:11 build 08-Jun-2020 23:02:11 prepare: build 08-Jun-2020 23:02:11 [mkdir] Created dir: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JB3-JOB1/classes build 08-Jun-2020 23:02:11 [copy] Copying 283 files to /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JB3-JOB1/classes build 08-Jun-2020 23:02:11 build 08-Jun-2020 23:02:11 prepare-site: build 08-Jun-2020 23:02:11 build 08-Jun-2020 23:02:11 clean-site: build 08-Jun-2020 23:02:11 [delete] Deleting directory /home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site build 08-Jun-2020 23:02:11 [mkdir] Created dir: /home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site build 08-Jun-2020 23:02:11 build 08-Jun-2020 23:02:11 compile-site: build 08-Jun-2020 23:02:11 [copy] Copying 1 file to /home/bamboo/buildtools/eclipse/eclipse-js/dropins build 08-Jun-2020 23:02:13 [exec] HEAD is now at 6a9d521 preferences/StructureViewer fix build 08-Jun-2020 23:02:21 [exec] From http://source.jalview.org/git/jalview build 08-Jun-2020 23:02:21 [exec] 6a9d521..d18e36d Jalview-JS/JAL-3253-applet -> origin/Jalview-JS/JAL-3253-applet build 08-Jun-2020 23:02:21 [exec] 58fe563..d8b2223 Jalview-JS/develop -> origin/Jalview-JS/develop build 08-Jun-2020 23:02:21 [exec] 2c66022..32c4144 Jalview-JS/develop.JAL-3446.SequenceFeatureAsync -> origin/Jalview-JS/develop.JAL-3446.SequenceFeatureAsync build 08-Jun-2020 23:02:21 [exec] 1475d0d..8939be9 develop -> origin/develop build 08-Jun-2020 23:02:21 [exec] * [new branch] features/JAL-3641_phredfromfastq -> origin/features/JAL-3641_phredfromfastq build 08-Jun-2020 23:02:21 [exec] You are not currently on a branch. Please specify which build 08-Jun-2020 23:02:21 [exec] branch you want to merge with. See git-pull(1) for details. build 08-Jun-2020 23:02:21 [exec] build 08-Jun-2020 23:02:21 [exec] git pull build 08-Jun-2020 23:02:21 [exec] build 08-Jun-2020 23:02:21 [exec] Result: 1 build 08-Jun-2020 23:02:21 [exec] Previous HEAD position was 6a9d521... preferences/StructureViewer fix build 08-Jun-2020 23:02:21 [exec] HEAD is now at d18e36d... from develep build 08-Jun-2020 23:02:21 [copy] Copying 1 file to /home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js build 08-Jun-2020 23:02:21 [delete] Deleting: /home/bamboo/buildtools/eclipse/eclipse-js-workspace/.metadata/.log build 08-Jun-2020 23:02:47 [exec] org.eclipse.m2e.logback.configuration: The org.eclipse.m2e.logback.configuration bundle was activated before the state location was initialized. Will retry after the state location is initialized. build 08-Jun-2020 23:03:04 [exec] SLF4J: Class path contains multiple SLF4J bindings. build 08-Jun-2020 23:03:04 [exec] SLF4J: Found binding in [bundleresource://981.fwk1522311648:1/org/slf4j/impl/StaticLoggerBinder.class] build 08-Jun-2020 23:03:04 [exec] SLF4J: Found binding in [bundleresource://981.fwk1522311648:2/org/slf4j/impl/StaticLoggerBinder.class] build 08-Jun-2020 23:03:04 [exec] SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an explanation. build 08-Jun-2020 23:03:04 [exec] SLF4J: Actual binding is of type [ch.qos.logback.classic.util.ContextSelectorStaticBinder] build 08-Jun-2020 23:03:04 [exec] org.eclipse.m2e.logback.configuration: Logback config file: /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/.metadata/.plugins/org.eclipse.m2e.logback.configuration/logback.1.9.0.20180606-2036.xml build 08-Jun-2020 23:03:04 [exec] org.eclipse.m2e.logback.configuration: Initializing logback build 08-Jun-2020 23:03:06 [exec] net.sf.j2s.core.3.2.9/3.2.9-v1 started build 08-Jun-2020 23:03:06 [exec] J2S CompilationParticipant started build 08-Jun-2020 23:03:06 [exec] J2S isActive true /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js build 08-Jun-2020 23:03:06 [exec] J2S aboutToBuild jalview-js /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js build 08-Jun-2020 23:03:08 [exec] J2S cleanStarting /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js build 08-Jun-2020 23:03:09 [exec] J2S buildStarting 990 files, contexts.size() = 1, isBatch=true build 08-Jun-2020 23:03:19 [exec] j2s.compiler.status = enable build 08-Jun-2020 23:03:19 [exec] j2s.compiler.java.version = 8 build 08-Jun-2020 23:03:19 [exec] #j2s compiler version set to 8 build 08-Jun-2020 23:03:19 [exec] j2s.break.on.error = false build 08-Jun-2020 23:03:19 [exec] j2s.compiler.mode = nodebug build 08-Jun-2020 23:03:19 [exec] j2s.site.directory = site build 08-Jun-2020 23:03:19 [exec] #j2s writing to /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site/swingjs/j2s build 08-Jun-2020 23:03:19 [exec] j2s.log.methods.declared = build 08-Jun-2020 23:03:19 [exec] j2s.log.methods.called = build 08-Jun-2020 23:03:19 [exec] j2s.excluded.paths = test;testng;utils build 08-Jun-2020 23:03:19 [exec] j2s.compiler.read.annotations = true build 08-Jun-2020 23:03:19 [exec] j2s.compiler.ignored.annotations = CallerSensitive;ConstructorProperties;Deprecated;Override;SafeVarargs;SuppressWarnings;FunctionalInterface;Documented;Inherited;Native;Repeatable;Retention; build 08-Jun-2020 23:03:19 [exec] j2s.testing = false build 08-Jun-2020 23:03:19 [exec] j2s.compiler.nonqualified.packages = build 08-Jun-2020 23:03:19 [exec] j2s.compiler.nonqualified.classes = build 08-Jun-2020 23:03:19 [exec] j2s.class.replacements = org.apache.log4j.->jalview.javascript.log4j. build 08-Jun-2020 23:03:19 [exec] j2s.template.html = template.html build 08-Jun-2020 23:03:19 [exec] J2S using HTML template /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/template.html build 08-Jun-2020 23:03:19 [exec] class replacement org.apache.log4j. --> jalview.javascript.log4j. build 08-Jun-2020 23:03:19 [exec] J2S building JavaScript jalview-js /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js Mon Jun 08 23:03:19 BST 2020 build 08-Jun-2020 23:03:19 [exec] J2S building JavaScript for 990 files build 08-Jun-2020 23:03:19 [exec] J2S transpiling (1/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/github/reinert/jjschema/Attributes.java build 08-Jun-2020 23:03:20 [exec] j2s copying resources from /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com to /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site/swingjs/j2s/com build 08-Jun-2020 23:03:20 [exec] J2S transpiling (2/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/AmpersandRule.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (3/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Any.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (4/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/BackG.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (5/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/BackMatch.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (6/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/BackRefRule.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (7/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Backup.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (8/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/BasicStringBufferLike.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (9/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Bits.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (10/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Boundary.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (11/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Bracket.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (12/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/CaseMgr.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (13/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/ChangeRule.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (14/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/CodeRule.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (15/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Ctrl.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (16/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Custom.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (17/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/CustomEndpoint.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (18/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/DirFileRegex.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (19/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/DotMulti.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (20/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/End.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (21/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/FastBracket.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (22/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/FastMulti.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (23/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/FileRegex.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (24/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Group.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (25/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/LeftRule.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (26/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Multi.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (27/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/MultiMin.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (28/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Multi_stage2.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (29/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/NoPattern.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (30/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/NonDirFileRegex.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (31/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/NotImplementedError.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (32/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/NullPattern.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (33/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/NullRule.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (34/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Or.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (35/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/OrMark.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (36/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/PartialBuffer.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (37/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Pattern.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (38/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/PatternSub.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (39/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/PopRule.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (40/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Prop.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (41/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Pthings.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (42/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/PushRule.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (43/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/RBuffer.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (44/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Range.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (45/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/RegOpt.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (46/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/RegRes.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (47/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/RegSyntax.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (48/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/RegSyntaxError.java build 08-Jun-2020 23:03:20 [exec] J2S transpiling (49/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Regex.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (50/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/RegexReader.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (51/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/RegexTokenizer.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (52/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/RegexWriter.java build 08-Jun-2020 23:03:21 [exec] >>>main found for com.stevesoft.pat.RegexWriter build 08-Jun-2020 23:03:21 [exec] J2S creating /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site/com_stevesoft_pat_RegexWriter.html build 08-Jun-2020 23:03:21 [exec] J2S transpiling (53/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/ReplaceRule.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (54/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Replacer.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (55/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/RightRule.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (56/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Rthings.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (57/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/RuleHolder.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (58/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Skip.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (59/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Skip2.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (60/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/SkipBMH.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (61/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Skipped.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (62/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/SpecialRule.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (63/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Start.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (64/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/StrPos.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (65/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/StringBufferLike.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (66/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/StringLike.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (67/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/StringRule.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (68/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/SubMark.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (69/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/TransPat.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (70/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Transformer.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (71/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/UniValidator.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (72/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Validator.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (73/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/WantMoreTextReplaceRule.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (74/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/lookAhead.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (75/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/oneChar.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (76/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/parsePerl.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (77/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/patInf.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (78/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/patInt.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (79/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/wrap/CharArrayBufferWrap.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (80/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/wrap/CharArrayWrap.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (81/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/wrap/RandomAccessFileWrap.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (82/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/wrap/StringBufferWrap.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (83/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/wrap/StringWrap.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (84/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/wrap/WriterWrap.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (85/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/edu/ucsf/rbvi/strucviz2/ChimUtils.java build 08-Jun-2020 23:03:21 [exec] j2s copying resources from /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext to /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site/swingjs/j2s/ext build 08-Jun-2020 23:03:21 [exec] J2S transpiling (86/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/edu/ucsf/rbvi/strucviz2/ChimeraChain.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (87/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/edu/ucsf/rbvi/strucviz2/ChimeraManager.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (88/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/edu/ucsf/rbvi/strucviz2/ChimeraModel.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (89/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/edu/ucsf/rbvi/strucviz2/ChimeraResidue.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (90/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/edu/ucsf/rbvi/strucviz2/ChimeraStructuralObject.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (91/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/edu/ucsf/rbvi/strucviz2/ChimeraTreeModel.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (92/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/edu/ucsf/rbvi/strucviz2/StructureManager.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (93/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/edu/ucsf/rbvi/strucviz2/StructureSettings.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (94/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/edu/ucsf/rbvi/strucviz2/port/ListenerThreads.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (95/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/vamsas/IRegistry.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (96/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/vamsas/IRegistryService.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (97/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/vamsas/IRegistryServiceLocator.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (98/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/vamsas/Jpred.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (99/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/vamsas/JpredService.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (100/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/vamsas/JpredServiceLocator.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (101/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/vamsas/JpredSoapBindingStub.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (102/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/vamsas/MuscleWS.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (103/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/vamsas/MuscleWSService.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (104/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/vamsas/MuscleWSServiceLocator.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (105/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/vamsas/MuscleWSSoapBindingStub.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (106/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/vamsas/RegistryServiceSoapBindingStub.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (107/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/vamsas/SeqSearchI.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (108/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/vamsas/SeqSearchServiceLocator.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (109/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/vamsas/SeqSearchServiceService.java build 08-Jun-2020 23:03:21 [exec] J2S transpiling (110/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/vamsas/SeqSearchServiceSoapBindingStub.java build 08-Jun-2020 23:03:22 [exec] J2S transpiling (111/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/vamsas/ServiceHandle.java build 08-Jun-2020 23:03:22 [exec] J2S transpiling (112/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/vamsas/ServiceHandles.java build 08-Jun-2020 23:03:22 [exec] J2S transpiling (113/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/intervalstore/nonc/IntervalStore.java build 08-Jun-2020 23:03:22 [exec] j2s copying resources from /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/intervalstore to /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site/swingjs/j2s/intervalstore build 08-Jun-2020 23:03:22 [exec] J2S transpiling (114/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/intervalstore/nonc/IntervalStore0.java build 08-Jun-2020 23:03:22 [exec] J2S transpiling (115/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/AAFrequency.java build 08-Jun-2020 23:03:22 [exec] j2s copying resources from /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview to /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site/swingjs/j2s/jalview build 08-Jun-2020 23:03:22 [exec] J2S transpiling (116/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/AlignSeq.java build 08-Jun-2020 23:03:22 [exec] J2S transpiling (117/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/AlignmentAnnotationUtils.java build 08-Jun-2020 23:03:22 [exec] J2S transpiling (118/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/AlignmentSorter.java build 08-Jun-2020 23:03:22 [exec] J2S transpiling (119/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/AlignmentUtils.java build 08-Jun-2020 23:03:22 [exec] J2S transpiling (120/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/AnnotationSorter.java build 08-Jun-2020 23:03:22 [exec] J2S transpiling (121/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/AverageDistanceTree.java build 08-Jun-2020 23:03:22 [exec] J2S transpiling (122/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/CodingUtils.java build 08-Jun-2020 23:03:22 [exec] J2S transpiling (123/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/CodonComparator.java build 08-Jun-2020 23:03:22 [exec] J2S transpiling (124/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/Conservation.java build 08-Jun-2020 23:03:22 [exec] J2S transpiling (125/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/CrossRef.java build 08-Jun-2020 23:03:22 [exec] J2S transpiling (126/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/Dna.java build 08-Jun-2020 23:03:22 [exec] J2S transpiling (127/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/Finder.java build 08-Jun-2020 23:03:22 [exec] J2S transpiling (128/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/GeneticCodeI.java build 08-Jun-2020 23:03:22 [exec] J2S transpiling (129/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/GeneticCodes.java build 08-Jun-2020 23:03:22 [exec] J2S transpiling (130/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/Grouping.java build 08-Jun-2020 23:03:22 [exec] J2S transpiling (131/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/NJTree.java build 08-Jun-2020 23:03:22 [exec] J2S transpiling (132/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/PCA.java build 08-Jun-2020 23:03:22 [exec] J2S transpiling (133/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/ParseProperties.java build 08-Jun-2020 23:03:22 [exec] J2S transpiling (134/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/Rna.java build 08-Jun-2020 23:03:22 [exec] J2S transpiling (135/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/SecStrConsensus.java build 08-Jun-2020 23:03:22 [exec] J2S transpiling (136/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/SeqsetUtils.java build 08-Jun-2020 23:03:22 [exec] J2S transpiling (137/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/SequenceIdMatcher.java build 08-Jun-2020 23:03:22 [exec] J2S transpiling (138/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/StructureFrequency.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (139/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/TreeBuilder.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (140/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/TreeModel.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (141/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/WUSSParseException.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (142/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/scoremodels/DistanceScoreModel.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (143/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/scoremodels/FeatureDistanceModel.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (144/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/scoremodels/PIDModel.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (145/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/scoremodels/ScoreMatrix.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (146/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/scoremodels/ScoreModels.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (147/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/scoremodels/SimilarityParams.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (148/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/scoremodels/SimilarityScoreModel.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (149/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/scoremodels/SmithWatermanModel.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (150/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/AlignCalcManagerI.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (151/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/AlignCalcWorkerI.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (152/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/AlignExportSettingsI.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (153/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/AlignFrameI.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (154/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/AlignViewControllerGuiI.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (155/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/AlignViewControllerI.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (156/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/AlignViewportI.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (157/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/AlignmentColsCollectionI.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (158/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/AlignmentRowsCollectionI.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (159/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/AlignmentViewPanel.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (160/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/BuildDetailsI.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (161/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/ComplexAlignFile.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (162/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/DBRefEntryI.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (163/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/FeatureColourI.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (164/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/FeatureRenderer.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (165/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/FeatureSettingsControllerI.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (166/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/FeatureSettingsModelI.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (167/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/FeaturesDisplayedI.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (168/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/FeaturesSourceI.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (169/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/FinderI.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (170/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/JalviewApp.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (171/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/OOMHandlerI.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (172/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/RendererListenerI.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (173/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/RotatableCanvasI.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (174/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/SequenceRenderer.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (175/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/SequenceStructureBinding.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (176/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/SiftsClientI.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (177/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/SplitContainerI.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (178/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/StructureSelectionManagerProvider.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (179/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/ViewStyleI.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (180/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/analysis/PairwiseScoreModelI.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (181/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/analysis/ScoreModelI.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (182/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/analysis/SimilarityParamsI.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (183/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/structures/JalviewStructureDisplayI.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (184/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/APopupMenu.java build 08-Jun-2020 23:03:23 [exec] J2S transpiling (185/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/AlignFrame.java build 08-Jun-2020 23:03:24 [exec] J2S transpiling (186/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/AlignViewport.java build 08-Jun-2020 23:03:24 [exec] J2S transpiling (187/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/AlignmentPanel.java build 08-Jun-2020 23:03:24 [exec] J2S transpiling (188/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/AnnotationColourChooser.java build 08-Jun-2020 23:03:24 [exec] J2S transpiling (189/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/AnnotationColumnChooser.java build 08-Jun-2020 23:03:24 [exec] J2S transpiling (190/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/AnnotationLabels.java build 08-Jun-2020 23:03:24 [exec] J2S transpiling (191/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/AnnotationPanel.java build 08-Jun-2020 23:03:24 [exec] J2S transpiling (192/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/AnnotationRowFilter.java build 08-Jun-2020 23:03:24 [exec] J2S transpiling (193/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/AppletJmol.java build 08-Jun-2020 23:03:24 [exec] J2S transpiling (194/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/AppletJmolBinding.java build 08-Jun-2020 23:03:24 [exec] J2S transpiling (195/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/CutAndPasteTransfer.java build 08-Jun-2020 23:03:24 [exec] J2S transpiling (196/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/EditNameDialog.java build 08-Jun-2020 23:03:24 [exec] J2S transpiling (197/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/EmbmenuFrame.java build 08-Jun-2020 23:03:24 [exec] J2S transpiling (198/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/ExtJmol.java build 08-Jun-2020 23:03:25 [exec] J2S transpiling (199/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/FeatureColourChooser.java build 08-Jun-2020 23:03:25 [exec] J2S transpiling (200/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/FeatureRenderer.java build 08-Jun-2020 23:03:25 [exec] J2S transpiling (201/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/FeatureSettings.java build 08-Jun-2020 23:03:25 [exec] J2S transpiling (202/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/Finder.java build 08-Jun-2020 23:03:25 [exec] J2S transpiling (203/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/FontChooser.java build 08-Jun-2020 23:03:25 [exec] J2S transpiling (204/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/IdCanvas.java build 08-Jun-2020 23:03:25 [exec] J2S transpiling (205/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/IdPanel.java build 08-Jun-2020 23:03:25 [exec] J2S transpiling (206/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/IdwidthAdjuster.java build 08-Jun-2020 23:03:25 [exec] J2S transpiling (207/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/JVDialog.java build 08-Jun-2020 23:03:25 [exec] J2S transpiling (208/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/OverviewCanvas.java build 08-Jun-2020 23:03:25 [exec] >>class jalview.appletgui.OverviewCanvas extended java.awt.Component now extends java.awt.Label build 08-Jun-2020 23:03:25 [exec] J2S transpiling (209/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/OverviewPanel.java build 08-Jun-2020 23:03:25 [exec] J2S transpiling (210/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/PCAPanel.java build 08-Jun-2020 23:03:25 [exec] J2S transpiling (211/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/PaintRefresher.java build 08-Jun-2020 23:03:25 [exec] J2S transpiling (212/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/PairwiseAlignPanel.java build 08-Jun-2020 23:03:25 [exec] J2S transpiling (213/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/RedundancyPanel.java build 08-Jun-2020 23:03:25 [exec] J2S transpiling (214/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/RotatableCanvas.java build 08-Jun-2020 23:03:25 [exec] J2S transpiling (215/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/ScalePanel.java build 08-Jun-2020 23:03:25 [exec] J2S transpiling (216/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/SeqCanvas.java build 08-Jun-2020 23:03:25 [exec] J2S transpiling (217/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/SeqPanel.java build 08-Jun-2020 23:03:25 [exec] J2S transpiling (218/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/SequenceRenderer.java build 08-Jun-2020 23:03:26 [exec] J2S transpiling (219/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/SliderPanel.java build 08-Jun-2020 23:03:26 [exec] J2S transpiling (220/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/SplitFrame.java build 08-Jun-2020 23:03:26 [exec] J2S transpiling (221/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/TitledPanel.java build 08-Jun-2020 23:03:26 [exec] J2S transpiling (222/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/Tooltip.java build 08-Jun-2020 23:03:26 [exec] J2S transpiling (223/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/TreeCanvas.java build 08-Jun-2020 23:03:26 [exec] J2S transpiling (224/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/TreePanel.java build 08-Jun-2020 23:03:26 [exec] J2S transpiling (225/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/UserDefinedColours.java build 08-Jun-2020 23:03:26 [exec] J2S transpiling (226/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/bin/AppletParams.java build 08-Jun-2020 23:03:26 [exec] >>>main found for jalview.bin.AppletParams build 08-Jun-2020 23:03:26 [exec] J2S creating /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site/jalview_bin_AppletParams.html build 08-Jun-2020 23:03:26 [exec] J2S transpiling (227/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/bin/ApplicationSingletonProvider.java build 08-Jun-2020 23:03:26 [exec] J2S transpiling (228/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/bin/ArgsParser.java build 08-Jun-2020 23:03:26 [exec] J2S transpiling (229/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/bin/BuildDetails.java build 08-Jun-2020 23:03:26 [exec] J2S transpiling (230/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/bin/Cache.java build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.Logger -> jalview.javascript.log4j.Logger build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.ConsoleAppender -> jalview.javascript.log4j.ConsoleAppender build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.ConsoleAppender -> jalview.javascript.log4j.ConsoleAppender build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.ConsoleAppender -> jalview.javascript.log4j.ConsoleAppender build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.Layout -> jalview.javascript.log4j.Layout build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.SimpleLayout -> jalview.javascript.log4j.SimpleLayout build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.SimpleLayout -> jalview.javascript.log4j.SimpleLayout build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.SimpleLayout -> jalview.javascript.log4j.SimpleLayout build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.Logger -> jalview.javascript.log4j.Logger build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.Appender -> jalview.javascript.log4j.Appender build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.Logger -> jalview.javascript.log4j.Logger build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.Logger -> jalview.javascript.log4j.Logger build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.Logger -> jalview.javascript.log4j.Logger build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.Logger -> jalview.javascript.log4j.Logger build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.Logger -> jalview.javascript.log4j.Logger build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.Appender -> jalview.javascript.log4j.Appender build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.Logger -> jalview.javascript.log4j.Logger build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:26 [exec] org.apache.log4j.Appender -> jalview.javascript.log4j.Appender build 08-Jun-2020 23:03:26 [exec] J2S transpiling (231/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/bin/Jalview.java build 08-Jun-2020 23:03:26 [exec] >>>main found for jalview.bin.Jalview build 08-Jun-2020 23:03:26 [exec] J2S creating /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site/jalview_bin_Jalview.html build 08-Jun-2020 23:03:26 [exec] J2S transpiling (232/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/bin/JalviewAppLoader.java build 08-Jun-2020 23:03:26 [exec] J2S transpiling (233/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/bin/JalviewJS2.java build 08-Jun-2020 23:03:26 [exec] >>>main found for jalview.bin.JalviewJS2 build 08-Jun-2020 23:03:26 [exec] J2S creating /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site/jalview_bin_JalviewJS2.html build 08-Jun-2020 23:03:26 [exec] J2S transpiling (234/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/bin/JalviewJSApi.java build 08-Jun-2020 23:03:26 [exec] J2S transpiling (235/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/bin/JalviewLite.java build 08-Jun-2020 23:03:27 [exec] J2S creating /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site/jalview_bin_JalviewLite_applet.html build 08-Jun-2020 23:03:27 [exec] J2S transpiling (236/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/bin/JalviewLiteURLRetrieve.java build 08-Jun-2020 23:03:27 [exec] J2S creating /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site/jalview_bin_JalviewLiteURLRetrieve_applet.html build 08-Jun-2020 23:03:27 [exec] J2S transpiling (237/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/commands/ChangeCaseCommand.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (238/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/commands/CommandI.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (239/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/commands/EditCommand.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (240/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/commands/OrderCommand.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (241/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/commands/RemoveGapColCommand.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (242/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/commands/RemoveGapsCommand.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (243/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/commands/SlideSequencesCommand.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (244/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/commands/TrimRegionCommand.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (245/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/controller/AlignViewController.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (246/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/controller/FeatureSettingsController.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (247/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/controller/FeatureSettingsControllerGuiI.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (248/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/ASequence.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (249/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/ASequenceI.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (250/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/AlignExportSettingsAdapter.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (251/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/AlignedCodon.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (252/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/AlignedCodonFrame.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (253/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/Alignment.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (254/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/AlignmentAnnotation.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (255/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/AlignmentExportData.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (256/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/AlignmentI.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (257/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/AlignmentOrder.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (258/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/AlignmentView.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (259/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/AllColsCollection.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (260/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/AllColsIterator.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (261/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/AllRowsCollection.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (262/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/AllRowsIterator.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (263/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/AnnotatedCollectionI.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (264/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/Annotation.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (265/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/BinaryNode.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (266/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/BinarySequence.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (267/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/CigarArray.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (268/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/CigarBase.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (269/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/CigarCigar.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (270/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/CigarSimple.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (271/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/ColumnSelection.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (272/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/ContiguousI.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (273/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/DBRefEntry.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (274/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/DBRefSource.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (275/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/FeatureProperties.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (276/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/GeneLociI.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (277/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/GraphLine.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (278/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/HiddenColumns.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (279/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/HiddenColumnsCursor.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (280/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/HiddenCursorPosition.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (281/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/HiddenSequences.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (282/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/IncompleteCodonException.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (283/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/Mapping.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (284/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/MappingType.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (285/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/NodeTransformI.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (286/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/PDBEntry.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (287/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/Point.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (288/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/Profile.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (289/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/ProfileI.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (290/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/Profiles.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (291/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/ProfilesI.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (292/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/Provenance.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (293/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/ProvenanceEntry.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (294/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/Range.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (295/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/RangeElementsIterator.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (296/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/RangeIterator.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (297/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/ResidueCount.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (298/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/RnaViewerModel.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (299/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/SearchResultMatchI.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (300/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/SearchResults.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (301/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/SearchResultsI.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (302/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/SecondaryStructureAnnotation.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (303/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/SeqCigar.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (304/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/Sequence.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (305/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/SequenceCollectionI.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (306/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/SequenceCursor.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (307/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/SequenceDummy.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (308/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/SequenceFeature.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (309/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/SequenceGroup.java build 08-Jun-2020 23:03:27 [exec] J2S transpiling (310/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/SequenceI.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (311/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/SequenceNode.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (312/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/SequencePoint.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (313/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/StartRegionIterator.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (314/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/StructureViewerModel.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (315/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/VisibleColsCollection.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (316/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/VisibleContigsIterator.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (317/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/VisibleRowsCollection.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (318/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/VisibleRowsIterator.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (319/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/features/FeatureAttributeType.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (320/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/features/FeatureAttributes.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (321/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/features/FeatureLocationI.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (322/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/features/FeatureMatcher.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (323/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/features/FeatureMatcherI.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (324/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/features/FeatureMatcherSet.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (325/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/features/FeatureMatcherSetI.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (326/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/features/FeatureSource.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (327/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/features/FeatureSourceI.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (328/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/features/FeatureSources.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (329/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/features/FeatureStore.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (330/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/features/SequenceFeatures.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (331/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/features/SequenceFeaturesI.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (332/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/exceptions/JalviewException.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (333/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/android/ContainerHelpers.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (334/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/android/SparseDoubleArray.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (335/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/android/SparseIntArray.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (336/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/android/SparseShortArray.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (337/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/ensembl/EnsemblCdna.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (338/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/ensembl/EnsemblCds.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (339/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/ensembl/EnsemblData.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (340/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/ensembl/EnsemblFeatures.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (341/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/ensembl/EnsemblGene.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (342/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/ensembl/EnsemblGenome.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (343/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/ensembl/EnsemblGenomes.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (344/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/ensembl/EnsemblInfo.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (345/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/ensembl/EnsemblLookup.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (346/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/ensembl/EnsemblMap.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (347/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/ensembl/EnsemblProtein.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (348/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/ensembl/EnsemblRestClient.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (349/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/ensembl/EnsemblSeqProxy.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (350/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/ensembl/EnsemblSequenceFetcher.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (351/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/ensembl/EnsemblSymbol.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (352/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/ensembl/EnsemblXref.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (353/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/ensembl/Species.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (354/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/htsjdk/HtsContigDb.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (355/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/htsjdk/VCFReader.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (356/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/jmol/JalviewJmolBinding.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (357/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/jmol/JmolCommands.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (358/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/jmol/JmolParser.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (359/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/paradise/Annotate3D.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (360/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/rbvi/chimera/AtomSpecModel.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (361/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/rbvi/chimera/ChimeraCommands.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (362/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/rbvi/chimera/ChimeraListener.java build 08-Jun-2020 23:03:28 [exec] J2S transpiling (363/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java build 08-Jun-2020 23:03:29 [exec] J2S transpiling (364/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/so/SequenceOntology.java build 08-Jun-2020 23:03:29 [exec] J2S transpiling (365/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/varna/JalviewVarnaBinding.java build 08-Jun-2020 23:03:29 [exec] J2S transpiling (366/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/varna/RnaModel.java build 08-Jun-2020 23:03:29 [exec] J2S transpiling (367/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/varna/VarnaCommands.java build 08-Jun-2020 23:03:29 [exec] J2S transpiling (368/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/fts/api/FTSData.java build 08-Jun-2020 23:03:29 [exec] J2S transpiling (369/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/fts/api/FTSDataColumnI.java build 08-Jun-2020 23:03:29 [exec] J2S transpiling (370/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/fts/api/FTSRestClientI.java build 08-Jun-2020 23:03:29 [exec] J2S transpiling (371/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/fts/api/GFTSPanelI.java build 08-Jun-2020 23:03:29 [exec] J2S transpiling (372/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/fts/core/DecimalFormatTableCellRenderer.java build 08-Jun-2020 23:03:29 [exec] J2S transpiling (373/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/fts/core/FTSDataColumnPreferences.java build 08-Jun-2020 23:03:29 [exec] J2S transpiling (374/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/fts/core/FTSRestClient.java build 08-Jun-2020 23:03:29 [exec] J2S transpiling (375/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/fts/core/FTSRestRequest.java build 08-Jun-2020 23:03:29 [exec] J2S transpiling (376/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/fts/core/FTSRestResponse.java build 08-Jun-2020 23:03:29 [exec] J2S transpiling (377/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/fts/core/GFTSPanel.java build 08-Jun-2020 23:03:29 [exec] J2S transpiling (378/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/fts/service/pdb/PDBFTSPanel.java build 08-Jun-2020 23:03:29 [exec] J2S transpiling (379/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/fts/service/pdb/PDBFTSRestClient.java build 08-Jun-2020 23:03:29 [exec] J2S transpiling (380/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/fts/service/uniprot/UniProtFTSRestClient.java build 08-Jun-2020 23:03:29 [exec] J2S transpiling (381/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/fts/service/uniprot/UniprotFTSPanel.java build 08-Jun-2020 23:03:29 [exec] J2S transpiling (382/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/AlignExportOptions.java build 08-Jun-2020 23:03:29 [exec] J2S transpiling (383/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/AlignFrame.java build 08-Jun-2020 23:03:29 [exec] J2S transpiling (384/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/AlignViewport.java build 08-Jun-2020 23:03:29 [exec] J2S transpiling (385/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/AlignmentPanel.java build 08-Jun-2020 23:03:30 [exec] J2S transpiling (386/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/AnnotationChooser.java build 08-Jun-2020 23:03:30 [exec] J2S transpiling (387/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/AnnotationColourChooser.java build 08-Jun-2020 23:03:30 [exec] J2S transpiling (388/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/AnnotationColumnChooser.java build 08-Jun-2020 23:03:30 [exec] J2S transpiling (389/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/AnnotationExporter.java build 08-Jun-2020 23:03:30 [exec] J2S transpiling (390/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/AnnotationLabels.java build 08-Jun-2020 23:03:30 [exec] J2S transpiling (391/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/AnnotationPanel.java build 08-Jun-2020 23:03:30 [exec] J2S transpiling (392/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/AnnotationRowFilter.java build 08-Jun-2020 23:03:30 [exec] J2S transpiling (393/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/AppJmol.java build 08-Jun-2020 23:03:30 [exec] J2S transpiling (394/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/AppJmolBinding.java build 08-Jun-2020 23:03:30 [exec] J2S transpiling (395/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/AppVarna.java build 08-Jun-2020 23:03:30 [exec] J2S transpiling (396/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/AppVarnaBinding.java build 08-Jun-2020 23:03:30 [exec] J2S transpiling (397/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/AquaInternalFrameManager.java build 08-Jun-2020 23:03:30 [exec] J2S transpiling (398/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/AssociatePdbFileWithSeq.java build 08-Jun-2020 23:03:30 [exec] J2S transpiling (399/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/BlogReader.java build 08-Jun-2020 23:03:30 [exec] J2S transpiling (400/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/CalculationChooser.java build 08-Jun-2020 23:03:30 [exec] J2S transpiling (401/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/ChimeraViewFrame.java build 08-Jun-2020 23:03:31 [exec] J2S transpiling (402/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/ColourMenuHelper.java build 08-Jun-2020 23:03:31 [exec] J2S transpiling (403/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/ComboBoxTooltipRenderer.java build 08-Jun-2020 23:03:31 [exec] J2S transpiling (404/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/Console.java build 08-Jun-2020 23:03:31 [exec] org.apache.log4j.Layout -> jalview.javascript.log4j.Layout build 08-Jun-2020 23:03:31 [exec] org.apache.log4j.SimpleLayout -> jalview.javascript.log4j.SimpleLayout build 08-Jun-2020 23:03:31 [exec] org.apache.log4j.SimpleLayout -> jalview.javascript.log4j.SimpleLayout build 08-Jun-2020 23:03:31 [exec] org.apache.log4j.SimpleLayout -> jalview.javascript.log4j.SimpleLayout build 08-Jun-2020 23:03:31 [exec] org.apache.log4j.Logger -> jalview.javascript.log4j.Logger build 08-Jun-2020 23:03:31 [exec] org.apache.log4j.Appender -> jalview.javascript.log4j.Appender build 08-Jun-2020 23:03:31 [exec] J2S transpiling (405/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/CrossRefAction.java build 08-Jun-2020 23:03:31 [exec] J2S transpiling (406/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/CutAndPasteHtmlTransfer.java build 08-Jun-2020 23:03:31 [exec] J2S transpiling (407/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/CutAndPasteTransfer.java build 08-Jun-2020 23:03:31 [exec] J2S transpiling (408/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/Desktop.java build 08-Jun-2020 23:03:31 [exec] J2S transpiling (409/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/EditNameDialog.java build 08-Jun-2020 23:03:31 [exec] J2S transpiling (410/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/FeatureEditor.java build 08-Jun-2020 23:03:31 [exec] J2S transpiling (411/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/FeatureRenderer.java build 08-Jun-2020 23:03:31 [exec] J2S transpiling (412/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/FeatureSettings.java build 08-Jun-2020 23:03:31 [exec] J2S transpiling (413/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/FeatureTypeSettings.java build 08-Jun-2020 23:03:31 [exec] J2S transpiling (414/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/Finder.java build 08-Jun-2020 23:03:31 [exec] J2S transpiling (415/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/FontChooser.java build 08-Jun-2020 23:03:31 [exec] J2S transpiling (416/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/Help.java build 08-Jun-2020 23:03:31 [exec] J2S transpiling (417/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/IProgressIndicator.java build 08-Jun-2020 23:03:31 [exec] J2S transpiling (418/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/IProgressIndicatorHandler.java build 08-Jun-2020 23:03:31 [exec] J2S transpiling (419/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/IdCanvas.java build 08-Jun-2020 23:03:31 [exec] J2S transpiling (420/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/IdPanel.java build 08-Jun-2020 23:03:32 [exec] J2S transpiling (421/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/IdwidthAdjuster.java build 08-Jun-2020 23:03:32 [exec] J2S transpiling (422/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/ImageExporter.java build 08-Jun-2020 23:03:32 [exec] J2S transpiling (423/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/JDatabaseTree.java build 08-Jun-2020 23:03:32 [exec] J2S transpiling (424/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/JalviewAppender.java build 08-Jun-2020 23:03:32 [exec] org.apache.log4j.WriterAppender -> jalview.javascript.log4j.WriterAppender build 08-Jun-2020 23:03:32 [exec] org.apache.log4j.spi.LoggingEvent -> jalview.javascript.log4j.spi.LoggingEvent build 08-Jun-2020 23:03:32 [exec] org.apache.log4j.spi.LoggingEvent -> jalview.javascript.log4j.spi.LoggingEvent build 08-Jun-2020 23:03:32 [exec] J2S transpiling (425/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/JalviewBooleanRadioButtons.java build 08-Jun-2020 23:03:32 [exec] J2S transpiling (426/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/JalviewChangeSupport.java build 08-Jun-2020 23:03:32 [exec] J2S transpiling (427/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/JalviewChimeraBindingModel.java build 08-Jun-2020 23:03:32 [exec] J2S transpiling (428/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/JalviewColourChooser.java build 08-Jun-2020 23:03:32 [exec] J2S transpiling (429/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/JalviewDialog.java build 08-Jun-2020 23:03:32 [exec] J2S transpiling (430/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/JvOptionPane.java build 08-Jun-2020 23:03:32 [exec] J2S transpiling (431/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/JvSwingUtils.java build 08-Jun-2020 23:03:32 [exec] J2S transpiling (432/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/LineartOptions.java build 08-Jun-2020 23:03:32 [exec] J2S transpiling (433/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/OOMWarning.java build 08-Jun-2020 23:03:32 [exec] J2S transpiling (434/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/OptsAndParamsPage.java build 08-Jun-2020 23:03:32 [exec] J2S transpiling (435/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/OptsParametersContainerI.java build 08-Jun-2020 23:03:32 [exec] J2S transpiling (436/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/OverviewCanvas.java build 08-Jun-2020 23:03:32 [exec] J2S transpiling (437/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/OverviewPanel.java build 08-Jun-2020 23:03:32 [exec] J2S transpiling (438/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/PCAPanel.java build 08-Jun-2020 23:03:32 [exec] J2S transpiling (439/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/PaintRefresher.java build 08-Jun-2020 23:03:32 [exec] J2S transpiling (440/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/PairwiseAlignPanel.java build 08-Jun-2020 23:03:32 [exec] J2S transpiling (441/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/PopupMenu.java build 08-Jun-2020 23:03:32 [exec] J2S transpiling (442/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/Preferences.java build 08-Jun-2020 23:03:32 [exec] J2S transpiling (443/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/ProgressBar.java build 08-Jun-2020 23:03:32 [exec] J2S transpiling (444/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/ProgressPanel.java build 08-Jun-2020 23:03:32 [exec] J2S transpiling (445/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/PromptUserConfig.java build 08-Jun-2020 23:03:32 [exec] J2S transpiling (446/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/RedundancyPanel.java build 08-Jun-2020 23:03:32 [exec] J2S transpiling (447/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/RestInputParamEditDialog.java build 08-Jun-2020 23:03:32 [exec] J2S transpiling (448/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/RestServiceEditorPane.java build 08-Jun-2020 23:03:32 [exec] J2S transpiling (449/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/RotatableCanvas.java build 08-Jun-2020 23:03:32 [exec] J2S transpiling (450/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/ScalePanel.java build 08-Jun-2020 23:03:32 [exec] J2S transpiling (451/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/SeqCanvas.java build 08-Jun-2020 23:03:32 [exec] J2S transpiling (452/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/SeqPanel.java build 08-Jun-2020 23:03:33 [exec] J2S transpiling (453/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/SequenceFetcher.java build 08-Jun-2020 23:03:33 [exec] J2S transpiling (454/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/SequenceRenderer.java build 08-Jun-2020 23:03:33 [exec] J2S transpiling (455/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/SliderPanel.java build 08-Jun-2020 23:03:33 [exec] J2S transpiling (456/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/SplashScreen.java build 08-Jun-2020 23:03:33 [exec] J2S transpiling (457/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/SplitFrame.java build 08-Jun-2020 23:03:33 [exec] J2S transpiling (458/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/StructureChooser.java build 08-Jun-2020 23:03:33 [exec] J2S transpiling (459/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/StructureViewer.java build 08-Jun-2020 23:03:33 [exec] J2S transpiling (460/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/StructureViewerBase.java build 08-Jun-2020 23:03:33 [exec] J2S transpiling (461/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/TextColourChooser.java build 08-Jun-2020 23:03:33 [exec] J2S transpiling (462/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/TreeCanvas.java build 08-Jun-2020 23:03:33 [exec] J2S transpiling (463/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/TreePanel.java build 08-Jun-2020 23:03:33 [exec] J2S transpiling (464/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/UserDefinedColours.java build 08-Jun-2020 23:03:33 [exec] J2S transpiling (465/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/UserQuestionnaireCheck.java build 08-Jun-2020 23:03:33 [exec] J2S transpiling (466/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/VamsasApplication.java build 08-Jun-2020 23:03:33 [exec] J2S transpiling (467/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/ViewSelectionMenu.java build 08-Jun-2020 23:03:33 [exec] J2S transpiling (468/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/WebserviceInfo.java build 08-Jun-2020 23:03:33 [exec] J2S transpiling (469/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/WsJobParameters.java build 08-Jun-2020 23:03:33 [exec] J2S transpiling (470/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/WsParamSetManager.java build 08-Jun-2020 23:03:33 [exec] J2S transpiling (471/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/WsPreferences.java build 08-Jun-2020 23:03:33 [exec] J2S transpiling (472/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/httpserver/AbstractRequestHandler.java build 08-Jun-2020 23:03:33 [exec] J2S transpiling (473/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/httpserver/HttpServer.java build 08-Jun-2020 23:03:33 [exec] J2S transpiling (474/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/AMSAFile.java build 08-Jun-2020 23:03:33 [exec] J2S transpiling (475/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/AlignFile.java build 08-Jun-2020 23:03:33 [exec] J2S transpiling (476/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/AlignmentFileReaderI.java build 08-Jun-2020 23:03:33 [exec] J2S transpiling (477/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/AlignmentFileWriterI.java build 08-Jun-2020 23:03:33 [exec] J2S transpiling (478/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/AlignmentProperties.java build 08-Jun-2020 23:03:33 [exec] J2S transpiling (479/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/AnnotationFile.java build 08-Jun-2020 23:03:33 [exec] J2S transpiling (480/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/AppletFormatAdapter.java build 08-Jun-2020 23:03:33 [exec] J2S transpiling (481/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/BLCFile.java build 08-Jun-2020 23:03:33 [exec] J2S transpiling (482/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/BackupFilenameFilter.java build 08-Jun-2020 23:03:33 [exec] J2S transpiling (483/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/BackupFilenameParts.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (484/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/BackupFiles.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (485/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/BioJsHTMLOutput.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (486/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/ClustalFile.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (487/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/DBRefFile.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (488/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/DataSourceType.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (489/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/FastaFile.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (490/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/FeaturesFile.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (491/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/FileFormat.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (492/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/FileFormatException.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (493/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/FileFormatI.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (494/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/FileFormats.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (495/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/FileLoader.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (496/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/FileParse.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (497/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/FormatAdapter.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (498/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/HTMLOutput.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (499/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/HtmlFile.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (500/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/HtmlSvgOutput.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (501/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/IdentifyFile.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (502/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/InputStreamParser.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (503/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/JPredFile.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (504/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/JSONFile.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (505/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/JalviewFileChooser.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (506/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/JalviewFileFilter.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (507/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/JalviewFileView.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (508/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/JnetAnnotationMaker.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (509/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/MSFfile.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (510/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/ModellerDescription.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (511/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/NewickFile.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (512/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/PDBFeatureSettings.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (513/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/PIRFile.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (514/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/PfamFile.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (515/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/PhylipFile.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (516/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/PileUpfile.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (517/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/RnamlFile.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (518/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/ScoreMatrixFile.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (519/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/SequenceAnnotationReport.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (520/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/SimpleBlastFile.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (521/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/StockholmFile.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (522/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/StructureFile.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (523/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/TCoffeeScoreFile.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (524/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/VamsasAppDatastore.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (525/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/WSWUBlastClient.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (526/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/cache/AppCache.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (527/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/cache/JvCacheableInputBox.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (528/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/gff/ExonerateHelper.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (529/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/gff/Gff2Helper.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (530/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/gff/Gff3Helper.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (531/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/gff/GffConstants.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (532/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/gff/GffHelperBase.java build 08-Jun-2020 23:03:34 [exec] J2S transpiling (533/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/gff/GffHelperFactory.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (534/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/gff/GffHelperI.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (535/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/gff/InterProScanHelper.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (536/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/gff/SequenceOntologyFactory.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (537/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/gff/SequenceOntologyI.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (538/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/gff/SequenceOntologyLite.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (539/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/packed/DataProvider.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (540/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/packed/JalviewDataset.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (541/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/packed/ParsePackedSet.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (542/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/packed/SimpleDataProvider.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (543/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/vamsas/Datasetsequence.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (544/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/vamsas/DatastoreItem.java build 08-Jun-2020 23:03:35 [exec] org.apache.log4j.Logger -> jalview.javascript.log4j.Logger build 08-Jun-2020 23:03:35 [exec] org.apache.log4j.Logger -> jalview.javascript.log4j.Logger build 08-Jun-2020 23:03:35 [exec] J2S transpiling (545/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/vamsas/DatastoreRegistry.java build 08-Jun-2020 23:03:35 [exec] org.apache.log4j.Logger -> jalview.javascript.log4j.Logger build 08-Jun-2020 23:03:35 [exec] org.apache.log4j.Logger -> jalview.javascript.log4j.Logger build 08-Jun-2020 23:03:35 [exec] J2S transpiling (546/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/vamsas/Dbref.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (547/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/vamsas/LocalDocSyncObject.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (548/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/vamsas/Rangetype.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (549/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/vamsas/Sequencefeature.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (550/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/vamsas/Sequencemapping.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (551/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/vamsas/Tree.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (552/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/vcf/VCFLoader.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (553/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/JSFunctionExec.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (554/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/JalviewLiteJsApi.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (555/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/JsCallBack.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (556/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/JsSelectionSender.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (557/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/MouseOverListener.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (558/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/MouseOverStructureListener.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (559/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/json/JSON.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (560/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/log4j/Appender.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (561/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/log4j/ConsoleAppender.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (562/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/log4j/Layout.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (563/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/log4j/Level.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (564/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/log4j/Logger.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (565/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/log4j/Priority.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (566/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/log4j/SimpleLayout.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (567/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/log4j/WriterAppender.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (568/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/log4j/spi/LoggingEvent.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (569/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/log4j/spi/OptionHandler.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (570/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/web/Client.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (571/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/web/ClientResponse.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (572/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/web/WebResource.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (573/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GAlignFrame.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (574/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GAlignmentPanel.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (575/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GCutAndPasteHtmlTransfer.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (576/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GCutAndPasteTransfer.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (577/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GDesktop.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (578/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GFinder.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (579/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GFontChooser.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (580/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GPCAPanel.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (581/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GPairwiseAlignPanel.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (582/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GPreferences.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (583/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GRestInputParamEditDialog.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (584/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GRestServiceEditorPane.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (585/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GRnaStructureViewer.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (586/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GSequenceLink.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (587/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GSliderPanel.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (588/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GSplitFrame.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (589/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GStructureChooser.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (590/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GStructureViewer.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (591/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GTreePanel.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (592/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GUserDefinedColours.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (593/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GWebserviceInfo.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (594/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GWsPreferences.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (595/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/json/binding/biojs/BioJSReleasePojo.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (596/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/json/binding/biojs/BioJSRepositoryPojo.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (597/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/json/binding/biojson/v1/AlignmentAnnotationPojo.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (598/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/json/binding/biojson/v1/AlignmentPojo.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (599/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/json/binding/biojson/v1/AnnotationDisplaySettingPojo.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (600/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/json/binding/biojson/v1/AnnotationPojo.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (601/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/json/binding/biojson/v1/ColourSchemeMapper.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (602/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/json/binding/biojson/v1/SequenceFeaturesPojo.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (603/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/json/binding/biojson/v1/SequenceGrpPojo.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (604/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/json/binding/biojson/v1/SequencePojo.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (605/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/math/AlignmentDimension.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (606/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/math/Matrix.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (607/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/math/MatrixI.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (608/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/math/RotatableMatrix.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (609/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/math/SparseMatrix.java build 08-Jun-2020 23:03:35 [exec] J2S transpiling (610/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/project/Jalview2XML.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (611/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/renderer/AnnotationRenderer.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (612/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/renderer/AwtRenderPanelI.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (613/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/renderer/OverviewRenderer.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (614/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/renderer/OverviewResColourFinder.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (615/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/renderer/ResidueColourFinder.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (616/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/renderer/ResidueShader.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (617/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/renderer/ResidueShaderI.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (618/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/renderer/ScaleRenderer.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (619/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/renderer/seqfeatures/FeatureColourFinder.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (620/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/renderer/seqfeatures/FeatureRenderer.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (621/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/rest/RestHandler.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (622/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/AnnotationColourGradient.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (623/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/Blosum62ColourScheme.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (624/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/BuriedColourScheme.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (625/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/ClustalxColourScheme.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (626/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/ColourSchemeI.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (627/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/ColourSchemeLoader.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (628/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/ColourSchemeProperty.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (629/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/ColourSchemes.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (630/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/Consensus.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (631/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/CovariationColourScheme.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (632/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/FeatureColour.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (633/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/FeatureSettingsAdapter.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (634/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/FollowerColourScheme.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (635/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/HelixColourScheme.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (636/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/HydrophobicColourScheme.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (637/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/IdColourScheme.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (638/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/JalviewColourScheme.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (639/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/NucleotideColourScheme.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (640/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/PIDColourScheme.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (641/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/PurinePyrimidineColourScheme.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (642/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/RNAHelicesColour.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (643/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/RNAHelicesColourChooser.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (644/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/RNAInteractionColourScheme.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (645/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/ResidueColourScheme.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (646/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/ResidueProperties.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (647/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/ScoreColourScheme.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (648/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/StrandColourScheme.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (649/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/TCoffeeColourScheme.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (650/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/TaylorColourScheme.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (651/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/TurnColourScheme.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (652/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/UserColourScheme.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (653/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/ZappoColourScheme.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (654/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/structure/AlignmentViewPanelListener.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (655/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/structure/AtomSpec.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (656/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/structure/CommandListener.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (657/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/structure/SecondaryStructureListener.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (658/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/structure/SelectionListener.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (659/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/structure/SelectionSource.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (660/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/structure/SequenceListener.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (661/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/structure/StructureImportSettings.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (662/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/structure/StructureListener.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (663/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/structure/StructureMapping.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (664/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/structure/StructureMappingcommandSet.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (665/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/structure/StructureSelectionManager.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (666/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/structure/VamsasListener.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (667/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/structure/VamsasSource.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (668/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/structures/models/AAStructureBindingModel.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (669/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/structures/models/SequenceStructureBindingModel.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (670/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/urls/CustomUrlProvider.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (671/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/urls/IdOrgSettings.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (672/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/urls/IdentifiersUrlProvider.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (673/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/urls/UrlLinkDisplay.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (674/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/urls/UrlLinkTableModel.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (675/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/urls/UrlProvider.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (676/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/urls/UrlProviderImpl.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (677/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/urls/api/UrlProviderFactoryI.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (678/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/urls/api/UrlProviderI.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (679/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/urls/applet/AppletUrlProviderFactory.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (680/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/urls/desktop/DesktopUrlProviderFactory.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (681/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/AWTConsole.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (682/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/ArrayUtils.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (683/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/BrowserLauncher.java build 08-Jun-2020 23:03:36 [exec] native: ICStart build 08-Jun-2020 23:03:36 [exec] native: ICStop build 08-Jun-2020 23:03:36 [exec] native: ICLaunchURL build 08-Jun-2020 23:03:36 [exec] J2S transpiling (684/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/CaseInsensitiveString.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (685/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/ColorUtils.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (686/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/Comparison.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (687/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/DBRefUtils.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (688/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/DnaUtils.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (689/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/Format.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (690/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/GroupUrlLink.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (691/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/HttpUtils.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (692/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/ImageMaker.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (693/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/IntRangeComparator.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (694/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/JSONUtils.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (695/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/LinkedIdentityHashSet.java build 08-Jun-2020 23:03:36 [exec] J2S transpiling (696/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/MapList.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (697/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/MappingUtils.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (698/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/MathUtils.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (699/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/MessageManager.java build 08-Jun-2020 23:03:37 [exec] org.apache.log4j.Logger -> jalview.javascript.log4j.Logger build 08-Jun-2020 23:03:37 [exec] org.apache.log4j.Logger -> jalview.javascript.log4j.Logger build 08-Jun-2020 23:03:37 [exec] J2S transpiling (700/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/ParseHtmlBodyAndLinks.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (701/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/Platform.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (702/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/QuickSort.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (703/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/ReverseListIterator.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (704/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/SetUtils.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (705/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/ShiftList.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (706/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/SparseCount.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (707/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/StringUtils.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (708/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/TableSorter.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (709/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/UrlConstants.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (710/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/UrlLink.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (711/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/dialogrunner/DialogRunnerI.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (712/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/jarInputStreamProvider.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (713/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/matcher/Condition.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (714/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/matcher/Matcher.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (715/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/matcher/MatcherI.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (716/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/viewmodel/AlignmentViewport.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (717/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/viewmodel/OverviewDimensions.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (718/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/viewmodel/OverviewDimensionsHideHidden.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (719/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/viewmodel/OverviewDimensionsShowHidden.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (720/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/viewmodel/PCAModel.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (721/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/viewmodel/ViewportListenerI.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (722/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/viewmodel/ViewportProperties.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (723/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/viewmodel/ViewportRanges.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (724/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/viewmodel/annotationfilter/AnnotationFilterParameter.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (725/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/viewmodel/seqfeatures/FeatureRendererModel.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (726/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/viewmodel/seqfeatures/FeatureRendererSettings.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (727/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/viewmodel/seqfeatures/FeatureSettingsModel.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (728/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/viewmodel/seqfeatures/FeaturesDisplayed.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (729/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/viewmodel/styles/ViewStyle.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (730/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/workers/AlignCalcManager.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (731/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/workers/AlignCalcWorker.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (732/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/workers/AlignmentAnnotationFactory.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (733/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/workers/AnnotationProviderI.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (734/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/workers/AnnotationWorker.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (735/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/workers/ColumnCounterSetWorker.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (736/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/workers/ComplementConsensusThread.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (737/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/workers/ConsensusThread.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (738/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/workers/ConservationThread.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (739/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/workers/FeatureSetCounterI.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (740/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/workers/StrucConsensusThread.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (741/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/AWSThread.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (742/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/AWsJob.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (743/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/DBRefFetcher.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (744/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/HttpClientUtils.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (745/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/JobStateSummary.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (746/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/SequenceFetcher.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (747/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/SequenceFetcherFactory.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (748/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/WSClient.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (749/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/WSClientI.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (750/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/WSMenuEntryProviderI.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (751/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/dbsources/EbiFileRetrievedProxy.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (752/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/dbsources/EmblCdsSource.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (753/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/dbsources/EmblSource.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (754/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/dbsources/EmblXmlSource.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (755/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/dbsources/GeneDbSource.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (756/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/dbsources/Pdb.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (757/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/dbsources/Pfam.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (758/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/dbsources/PfamFull.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (759/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/dbsources/PfamSeed.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (760/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/dbsources/Rfam.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (761/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/dbsources/RfamFull.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (762/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/dbsources/RfamSeed.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (763/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/dbsources/Uniprot.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (764/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/dbsources/UniprotName.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (765/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/dbsources/Xfam.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (766/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/ebi/EBIFetchClient.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (767/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/io/mime/HttpContentHandler.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (768/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/io/mime/JalviewMimeContentHandler.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (769/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/io/mime/MimeTypes.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (770/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws1/Annotate3D.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (771/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws1/Discoverer.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (772/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws1/JPredClient.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (773/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws1/JPredThread.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (774/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws1/JWS1Thread.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (775/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws1/MsaWSClient.java build 08-Jun-2020 23:03:37 [exec] J2S transpiling (776/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws1/MsaWSThread.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (777/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws1/SeqSearchWSClient.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (778/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws1/SeqSearchWSThread.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (779/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws1/WS1Client.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (780/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws1/WSJob.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (781/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/AAConClient.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (782/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/AADisorderClient.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (783/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/AWS2Thread.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (784/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/AbstractJabaCalcWorker.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (785/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/JWs2Job.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (786/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/JabaParamStore.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (787/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/JabaPreset.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (788/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/JabaWsServerQuery.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (789/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/JabawsCalcWorker.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (790/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/JabawsMsaInterfaceAlignCalcWorker.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (791/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/Jws2Client.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (792/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/Jws2Discoverer.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (793/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/MsaWSClient.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (794/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/MsaWSThread.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (795/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/ParameterUtils.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (796/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/RNAalifoldClient.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (797/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/SequenceAnnotationWSClient.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (798/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/dm/AAConSettings.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (799/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/dm/JabaOption.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (800/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/dm/JabaParameter.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (801/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/dm/JabaValueConstrain.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (802/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/dm/JabaWsParamSet.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (803/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/jabaws2/Jws2Instance.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (804/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/jabaws2/Jws2InstanceFactory.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (805/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/params/ArgumentI.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (806/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/params/AutoCalcSetting.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (807/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/params/InvalidArgumentException.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (808/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/params/OptionI.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (809/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/params/ParamDatastoreI.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (810/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/params/ParamManager.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (811/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/params/ParameterI.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (812/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/params/ValueConstrainI.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (813/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/params/WsParamSetI.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (814/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/params/simple/BooleanOption.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (815/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/params/simple/IntegerParameter.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (816/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/params/simple/Option.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (817/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/params/simple/Parameter.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (818/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/params/simple/StringChoiceParameter.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (819/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/rest/AlignmentProcessor.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (820/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/rest/HttpResultSet.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (821/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/rest/InputType.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (822/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/rest/NoValidInputDataException.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (823/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/rest/RestClient.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (824/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/rest/RestJob.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (825/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/rest/RestJobThread.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (826/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/rest/RestServiceDescription.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (827/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/rest/params/Alignment.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (828/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/rest/params/AnnotationFile.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (829/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/rest/params/JobConstant.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (830/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/rest/params/SeqGroupIndexVector.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (831/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/rest/params/SeqIdVector.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (832/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/rest/params/SeqVector.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (833/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/rest/params/Tree.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (834/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/seqfetcher/ASequenceFetcher.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (835/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/seqfetcher/DbSourceProxy.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (836/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/seqfetcher/DbSourceProxyImpl.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (837/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/seqfetcher/DbSourceProxyRoot.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (838/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/sifts/MappingOutputPojo.java build 08-Jun-2020 23:03:38 [exec] J2S transpiling (839/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/sifts/SiftsClient.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (840/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/sifts/SiftsException.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (841/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/sifts/SiftsSettings.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (842/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/uimodel/AlignAnalysisUIText.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (843/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/utils/UrlDownloadClient.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (844/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/embl/EntrySetType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (845/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/embl/EntryType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (846/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/embl/ObjectFactory.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (847/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/embl/ROOT.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (848/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/embl/XrefType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (849/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/AlcodonFrame.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (850/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/Annotation.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (851/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/AnnotationColourScheme.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (852/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/AnnotationElement.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (853/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/DoubleMatrix.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (854/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/DoubleVector.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (855/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/Feature.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (856/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/FeatureMatcher.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (857/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/FeatureMatcherSet.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (858/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/FilterBy.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (859/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/JalviewModel.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (860/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/JalviewUserColours.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (861/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/MapListType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (862/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/Mapping.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (863/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/NoValueColour.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (864/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/ObjectFactory.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (865/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/PcaDataType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (866/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/Pdbentry.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (867/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/Sequence.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (868/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/SequenceSet.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (869/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/SequenceType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (870/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/ThresholdType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (871/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/VAMSAS.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (872/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/WebServiceParameterSet.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (873/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/package-info.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (874/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/sifts/Alignment.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (875/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/sifts/EntityType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (876/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/sifts/Entry.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (877/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/sifts/ObjectFactory.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (878/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/sifts/package-info.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (879/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/CitationType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (880/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/CofactorType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (881/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/CommentType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (882/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/ConsortiumType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (883/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/DbReferenceType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (884/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/Entry.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (885/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/EventType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (886/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/EvidenceType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (887/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/EvidencedStringType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (888/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/FeatureType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (889/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/GeneLocationType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (890/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/GeneNameType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (891/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/GeneType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (892/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/ImportedFromType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (893/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/InteractantType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (894/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/IsoformType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (895/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/KeywordType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (896/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/LocationType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (897/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/MoleculeType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (898/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/NameListType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (899/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/ObjectFactory.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (900/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/OrganismNameType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (901/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/OrganismType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (902/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/PersonType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (903/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/PhysiologicalReactionType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (904/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/PositionType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (905/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/PropertyType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (906/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/ProteinExistenceType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (907/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/ProteinType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (908/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/ReactionType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (909/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/ReferenceType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (910/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/SequenceType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (911/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/SourceDataType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (912/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/SourceType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (913/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/StatusType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (914/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/SubcellularLocationType.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (915/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/Uniprot.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (916/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/package-info.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (917/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/javajs/async/Assets.java build 08-Jun-2020 23:03:39 [exec] j2s copying resources from /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/javajs to /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site/swingjs/j2s/javajs build 08-Jun-2020 23:03:39 [exec] J2S transpiling (918/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/javajs/async/Async.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (919/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/javajs/async/AsyncColorChooser.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (920/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/javajs/async/AsyncDialog.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (921/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/javajs/async/AsyncFileChooser.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (922/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/javajs/async/AsyncSwingWorker.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (923/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/javajs/async/SwingJSUtils.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (924/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/mc_view/AppletPDBCanvas.java build 08-Jun-2020 23:03:39 [exec] j2s copying resources from /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/mc_view to /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site/swingjs/j2s/mc_view build 08-Jun-2020 23:03:39 [exec] J2S transpiling (925/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/mc_view/AppletPDBViewer.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (926/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/mc_view/Atom.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (927/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/mc_view/Bond.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (928/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/mc_view/MCMatrix.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (929/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/mc_view/PDBCanvas.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (930/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/mc_view/PDBChain.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (931/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/mc_view/PDBfile.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (932/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/mc_view/Residue.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (933/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/mc_view/Zsort.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (934/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/org/jibble/epsgraphics/EpsDocument.java build 08-Jun-2020 23:03:39 [exec] j2s copying resources from /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/org to /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site/swingjs/j2s/org build 08-Jun-2020 23:03:39 [exec] J2S transpiling (935/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/org/jibble/epsgraphics/EpsException.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (936/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/org/jibble/epsgraphics/EpsGraphics2D.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (937/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/org/stackoverflowusers/file/WindowsShortcut.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (938/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/swingjs/api/Interface.java build 08-Jun-2020 23:03:39 [exec] j2s copying resources from /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/swingjs to /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site/swingjs/j2s/swingjs build 08-Jun-2020 23:03:39 [exec] J2S transpiling (939/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/swingjs/api/JSFileHandler.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (940/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/swingjs/api/JSUtilI.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (941/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/swingjs/api/js/DOMNode.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (942/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/swingjs/api/js/HTML5Applet.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (943/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/swingjs/api/js/HTML5AudioContext.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (944/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/swingjs/api/js/HTML5Canvas.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (945/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/swingjs/api/js/HTML5CanvasContext2D.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (946/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/swingjs/api/js/HTML5DataTransfer.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (947/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/swingjs/api/js/HTML5Video.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (948/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/swingjs/api/js/J2SInterface.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (949/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/swingjs/api/js/JQuery.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (950/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/swingjs/api/js/JQueryObject.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (951/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/swingjs/api/js/JSFunction.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (952/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/swingjs/api/js/JSInterface.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (953/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/uk/ac/ebi/picr/model/CrossReference.java build 08-Jun-2020 23:03:39 [exec] j2s copying resources from /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/uk to /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site/swingjs/j2s/uk build 08-Jun-2020 23:03:39 [exec] J2S transpiling (954/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/uk/ac/ebi/picr/model/CrossReference_Helper.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (955/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/uk/ac/ebi/picr/model/UPEntry.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (956/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/uk/ac/ebi/picr/model/UPEntry_Helper.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (957/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/uk/ac/ebi/www/Data.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (958/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/uk/ac/ebi/www/InputParams.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (959/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/uk/ac/ebi/www/WSFile.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (960/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/uk/ac/ebi/www/WSWUBlast.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (961/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/uk/ac/ebi/www/WSWUBlastService.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (962/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/uk/ac/ebi/www/WSWUBlastServiceLocator.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (963/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/uk/ac/ebi/www/WSWUBlastSoapBindingStub.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (964/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (965/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperInterface.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (966/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperService.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (967/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperServiceLocator.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (968/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/IMsaWS.java build 08-Jun-2020 23:03:39 [exec] j2s copying resources from /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas to /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site/swingjs/j2s/vamsas build 08-Jun-2020 23:03:39 [exec] J2S transpiling (969/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/Alignment.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (970/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/Alignment_Helper.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (971/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/JpredResult.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (972/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/JpredResult_Helper.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (973/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/MsaResult.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (974/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/MsaResult_Helper.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (975/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/Msfalignment.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (976/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/Msfalignment_Helper.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (977/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/Object.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (978/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/Object_Helper.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (979/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/Result.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (980/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/Result_Helper.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (981/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/Secstructpred.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (982/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/Secstructpred_Helper.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (983/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/SeqSearchResult.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (984/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/SeqSearchResult_Helper.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (985/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/Sequence.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (986/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/SequenceSet.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (987/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/SequenceSet_Helper.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (988/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/Sequence_Helper.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (989/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/WsJobId.java build 08-Jun-2020 23:03:39 [exec] J2S transpiling (990/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/WsJobId_Helper.java build 08-Jun-2020 23:03:39 [exec] J2S processed 990 .java files, created 1021 .js files and 6 .html files, copied 10 resources build 08-Jun-2020 23:03:39 [exec] J2S buildFinished 990 files transpiled for /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js build 08-Jun-2020 23:03:39 [exec] J2S buildFinished nerror = 0 Mon Jun 08 23:03:39 BST 2020 build 08-Jun-2020 23:03:39 [exec] Building workspace build 08-Jun-2020 23:03:39 [exec] Building '/RemoteSystemsTempFiles' build 08-Jun-2020 23:03:39 [exec] Building '/jalview-js' build 08-Jun-2020 23:03:39 [exec] Invoking 'Java Builder' on '/jalview-js'. build 08-Jun-2020 23:03:39 [exec] J2S aboutToBuild jalview-js /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js build 08-Jun-2020 23:03:39 [exec] J2S cleanStarting /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js build 08-Jun-2020 23:03:39 [exec] Cleaning output folder for jalview-js build 08-Jun-2020 23:03:40 [exec] Build done build 08-Jun-2020 23:03:40 [exec] Invoking 'Faceted Project Validation Builder' on '/jalview-js'. build 08-Jun-2020 23:03:40 [exec] Building workspace build 08-Jun-2020 23:03:40 [exec] Building '/.org.eclipse.jdt.core.external.folders' build 08-Jun-2020 23:03:40 [exec] Building '/RemoteSystemsTempFiles' build 08-Jun-2020 23:03:40 [exec] Building '/jalview-js' build 08-Jun-2020 23:03:40 [exec] Invoking 'Java Builder' on '/jalview-js'. build 08-Jun-2020 23:03:40 [exec] J2S aboutToBuild jalview-js /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js build 08-Jun-2020 23:03:40 [exec] Preparing to build jalview-js build 08-Jun-2020 23:03:40 [exec] Cleaning output folder for jalview-js build 08-Jun-2020 23:03:40 [exec] J2S cleanStarting /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js build 08-Jun-2020 23:03:40 [exec] Copying resources to the output folder build 08-Jun-2020 23:03:40 [exec] Analyzing sources build 08-Jun-2020 23:03:40 [exec] J2S buildStarting 990 files, contexts.size() = 1, isBatch=true build 08-Jun-2020 23:03:40 [exec] Compiling jalview-js/src/com/github/reinert/jjschema build 08-Jun-2020 23:03:40 [exec] Compiling jalview-js/src/com/stevesoft/pat build 08-Jun-2020 23:03:40 [exec] (Found 1 warning) Compiling jalview-js/src/com/stevesoft/pat build 08-Jun-2020 23:03:40 [exec] (Found 2 warnings) Compiling jalview-js/src/com/stevesoft/pat build 08-Jun-2020 23:03:40 [exec] (Found 3 warnings) Compiling jalview-js/src/com/stevesoft/pat build 08-Jun-2020 23:03:40 [exec] (Found 4 warnings) Compiling jalview-js/src/com/stevesoft/pat build 08-Jun-2020 23:03:40 [exec] (Found 5 warnings) Compiling jalview-js/src/com/stevesoft/pat build 08-Jun-2020 23:03:40 [exec] (Found 9 warnings) Compiling jalview-js/src/com/stevesoft/pat build 08-Jun-2020 23:03:40 [exec] (Found 12 warnings) Compiling jalview-js/src/com/stevesoft/pat build 08-Jun-2020 23:03:40 [exec] (Found 13 warnings) Compiling jalview-js/src/com/stevesoft/pat build 08-Jun-2020 23:03:40 [exec] (Found 14 warnings) Compiling jalview-js/src/com/stevesoft/pat build 08-Jun-2020 23:03:40 [exec] (Found 15 warnings) Compiling jalview-js/src/com/stevesoft/pat build 08-Jun-2020 23:03:40 [exec] (Found 37 warnings) Compiling jalview-js/src/com/stevesoft/pat build 08-Jun-2020 23:03:40 [exec] (Found 38 warnings) Compiling jalview-js/src/com/stevesoft/pat build 08-Jun-2020 23:03:40 [exec] (Found 46 warnings) Compiling jalview-js/src/com/stevesoft/pat build 08-Jun-2020 23:03:40 [exec] (Found 47 warnings) Compiling jalview-js/src/com/stevesoft/pat build 08-Jun-2020 23:03:40 [exec] (Found 48 warnings) Compiling jalview-js/src/com/stevesoft/pat build 08-Jun-2020 23:03:40 [exec] (Found 49 warnings) Compiling jalview-js/src/com/stevesoft/pat build 08-Jun-2020 23:03:40 [exec] (Found 50 warnings) Compiling jalview-js/src/com/stevesoft/pat build 08-Jun-2020 23:03:40 [exec] (Found 51 warnings) Compiling jalview-js/src/com/stevesoft/pat build 08-Jun-2020 23:03:40 [exec] (Found 52 warnings) Compiling jalview-js/src/com/stevesoft/pat build 08-Jun-2020 23:03:40 [exec] (Found 59 warnings) Compiling jalview-js/src/com/stevesoft/pat build 08-Jun-2020 23:03:40 [exec] (Found 63 warnings) Compiling jalview-js/src/com/stevesoft/pat build 08-Jun-2020 23:03:40 [exec] (Found 67 warnings) Compiling jalview-js/src/com/stevesoft/pat build 08-Jun-2020 23:03:40 [exec] (Found 69 warnings) Compiling jalview-js/src/com/stevesoft/pat build 08-Jun-2020 23:03:40 [exec] (Found 89 warnings) Compiling jalview-js/src/com/stevesoft/pat build 08-Jun-2020 23:03:40 [exec] (Found 90 warnings) Compiling jalview-js/src/com/stevesoft/pat build 08-Jun-2020 23:03:40 [exec] (Found 91 warnings) Compiling jalview-js/src/com/stevesoft/pat build 08-Jun-2020 23:03:40 [exec] (Found 98 warnings) Compiling jalview-js/src/com/stevesoft/pat build 08-Jun-2020 23:03:40 [exec] (Found 108 warnings) Compiling jalview-js/src/com/stevesoft/pat build 08-Jun-2020 23:03:40 [exec] (Found 113 warnings) Compiling jalview-js/src/com/stevesoft/pat build 08-Jun-2020 23:03:40 [exec] (Found 114 warnings) Compiling jalview-js/src/com/stevesoft/pat build 08-Jun-2020 23:03:40 [exec] (Found 115 warnings) Compiling jalview-js/src/com/stevesoft/pat build 08-Jun-2020 23:03:40 [exec] (Found 119 warnings) Compiling jalview-js/src/com/stevesoft/pat build 08-Jun-2020 23:03:40 [exec] (Found 120 warnings) Compiling jalview-js/src/com/stevesoft/pat build 08-Jun-2020 23:03:40 [exec] (Found 120 warnings) Compiling jalview-js/src/com/stevesoft/pat/wrap build 08-Jun-2020 23:03:40 [exec] (Found 120 warnings) Compiling jalview-js/src/ext/edu/ucsf/rbvi/strucviz2 build 08-Jun-2020 23:03:40 [exec] (Found 122 warnings) Compiling jalview-js/src/ext/edu/ucsf/rbvi/strucviz2 build 08-Jun-2020 23:03:40 [exec] (Found 129 warnings) Compiling jalview-js/src/ext/edu/ucsf/rbvi/strucviz2 build 08-Jun-2020 23:03:40 [exec] (Found 138 warnings) Compiling jalview-js/src/ext/edu/ucsf/rbvi/strucviz2/port build 08-Jun-2020 23:03:40 [exec] (Found 138 warnings) Compiling jalview-js/src/ext/vamsas build 08-Jun-2020 23:03:40 [exec] (Found 145 warnings) Compiling jalview-js/src/ext/vamsas build 08-Jun-2020 23:03:40 [exec] (Found 152 warnings) Compiling jalview-js/src/ext/vamsas build 08-Jun-2020 23:03:40 [exec] (Found 190 warnings) Compiling jalview-js/src/ext/vamsas build 08-Jun-2020 23:03:40 [exec] (Found 197 warnings) Compiling jalview-js/src/ext/vamsas build 08-Jun-2020 23:03:40 [exec] (Found 253 warnings) Compiling jalview-js/src/ext/vamsas build 08-Jun-2020 23:03:40 [exec] (Found 285 warnings) Compiling jalview-js/src/ext/vamsas build 08-Jun-2020 23:03:40 [exec] (Found 292 warnings) Compiling jalview-js/src/ext/vamsas build 08-Jun-2020 23:03:40 [exec] (Found 360 warnings) Compiling jalview-js/src/ext/vamsas build 08-Jun-2020 23:03:40 [exec] (Found 363 warnings) Compiling jalview-js/src/ext/vamsas build 08-Jun-2020 23:03:40 [exec] (Found 366 warnings) Compiling jalview-js/src/ext/vamsas build 08-Jun-2020 23:03:40 [exec] (Found 366 warnings) Compiling jalview-js/src/intervalstore/nonc build 08-Jun-2020 23:03:40 [exec] (Found 366 warnings) Compiling jalview-js/src/jalview/analysis build 08-Jun-2020 23:03:40 [exec] (Found 376 warnings) Compiling jalview-js/src/jalview/analysis build 08-Jun-2020 23:03:40 [exec] (Found 377 warnings) Compiling jalview-js/src/jalview/analysis build 08-Jun-2020 23:03:40 [exec] (Found 378 warnings) Compiling jalview-js/src/jalview/analysis build 08-Jun-2020 23:03:40 [exec] (Found 380 warnings) Compiling jalview-js/src/jalview/analysis build 08-Jun-2020 23:03:40 [exec] (Found 381 warnings) Compiling jalview-js/src/jalview/analysis build 08-Jun-2020 23:03:40 [exec] (Found 407 warnings) Compiling jalview-js/src/jalview/analysis build 08-Jun-2020 23:03:40 [exec] (Found 411 warnings) Compiling jalview-js/src/jalview/analysis build 08-Jun-2020 23:03:40 [exec] (Found 412 warnings) Compiling jalview-js/src/jalview/analysis build 08-Jun-2020 23:03:40 [exec] (Found 412 warnings) Compiling jalview-js/src/jalview/analysis/scoremodels build 08-Jun-2020 23:03:40 [exec] (Found 412 warnings) Compiling jalview-js/src/jalview/api build 08-Jun-2020 23:03:40 [exec] (Found 412 warnings) Compiling jalview-js/src/jalview/api/analysis build 08-Jun-2020 23:03:40 [exec] (Found 412 warnings) Compiling jalview-js/src/jalview/api/structures build 08-Jun-2020 23:03:40 [exec] (Found 413 warnings) Compiling jalview-js/src/jalview/appletgui build 08-Jun-2020 23:03:40 [exec] (Found 439 warnings) Compiling jalview-js/src/jalview/appletgui build 08-Jun-2020 23:03:40 [exec] (Found 440 warnings) Compiling jalview-js/src/jalview/appletgui build 08-Jun-2020 23:03:40 [exec] (Found 456 warnings) Compiling jalview-js/src/jalview/appletgui build 08-Jun-2020 23:03:40 [exec] (Found 457 warnings) Compiling jalview-js/src/jalview/appletgui build 08-Jun-2020 23:03:40 [exec] (Found 459 warnings) Compiling jalview-js/src/jalview/appletgui build 08-Jun-2020 23:03:40 [exec] (Found 462 warnings) Compiling jalview-js/src/jalview/appletgui build 08-Jun-2020 23:03:40 [exec] (Found 463 warnings) Compiling jalview-js/src/jalview/appletgui build 08-Jun-2020 23:03:40 [exec] (Found 464 warnings) Compiling jalview-js/src/jalview/appletgui build 08-Jun-2020 23:03:40 [exec] (Found 465 warnings) Compiling jalview-js/src/jalview/appletgui build 08-Jun-2020 23:03:40 [exec] (Found 469 warnings) Compiling jalview-js/src/jalview/appletgui build 08-Jun-2020 23:03:40 [exec] (Found 471 warnings) Compiling jalview-js/src/jalview/appletgui build 08-Jun-2020 23:03:40 [exec] (Found 472 warnings) Compiling jalview-js/src/jalview/appletgui build 08-Jun-2020 23:03:40 [exec] (Found 473 warnings) Compiling jalview-js/src/jalview/appletgui build 08-Jun-2020 23:03:40 [exec] (Found 474 warnings) Compiling jalview-js/src/jalview/appletgui build 08-Jun-2020 23:03:40 [exec] (Found 476 warnings) Compiling jalview-js/src/jalview/appletgui build 08-Jun-2020 23:03:40 [exec] (Found 477 warnings) Compiling jalview-js/src/jalview/appletgui build 08-Jun-2020 23:03:40 [exec] (Found 478 warnings) Compiling jalview-js/src/jalview/appletgui build 08-Jun-2020 23:03:40 [exec] (Found 479 warnings) Compiling jalview-js/src/jalview/appletgui build 08-Jun-2020 23:03:40 [exec] (Found 480 warnings) Compiling jalview-js/src/jalview/appletgui build 08-Jun-2020 23:03:40 [exec] (Found 487 warnings) Compiling jalview-js/src/jalview/appletgui build 08-Jun-2020 23:03:40 [exec] (Found 497 warnings) Compiling jalview-js/src/jalview/appletgui build 08-Jun-2020 23:03:40 [exec] (Found 498 warnings) Compiling jalview-js/src/jalview/appletgui build 08-Jun-2020 23:03:40 [exec] (Found 499 warnings) Compiling jalview-js/src/jalview/appletgui build 08-Jun-2020 23:03:41 [exec] (Found 501 warnings) Compiling jalview-js/src/jalview/appletgui build 08-Jun-2020 23:03:41 [exec] (Found 502 warnings) Compiling jalview-js/src/jalview/appletgui build 08-Jun-2020 23:03:41 [exec] (Found 507 warnings) Compiling jalview-js/src/jalview/appletgui build 08-Jun-2020 23:03:41 [exec] (Found 508 warnings) Compiling jalview-js/src/jalview/appletgui build 08-Jun-2020 23:03:41 [exec] (Found 516 warnings) Compiling jalview-js/src/jalview/appletgui build 08-Jun-2020 23:03:41 [exec] (Found 517 warnings) Compiling jalview-js/src/jalview/appletgui build 08-Jun-2020 23:03:41 [exec] (Found 518 warnings) Compiling jalview-js/src/jalview/appletgui build 08-Jun-2020 23:03:41 [exec] (Found 518 warnings) Compiling jalview-js/src/jalview/bin build 08-Jun-2020 23:03:41 [exec] (Found 526 warnings) Compiling jalview-js/src/jalview/bin build 08-Jun-2020 23:03:41 [exec] (Found 528 warnings) Compiling jalview-js/src/jalview/bin build 08-Jun-2020 23:03:41 [exec] (Found 534 warnings) Compiling jalview-js/src/jalview/bin build 08-Jun-2020 23:03:41 [exec] (Found 534 warnings) Compiling jalview-js/src/jalview/commands build 08-Jun-2020 23:03:41 [exec] (Found 534 warnings) Compiling jalview-js/src/jalview/controller build 08-Jun-2020 23:03:41 [exec] (Found 534 warnings) Compiling jalview-js/src/jalview/datamodel build 08-Jun-2020 23:03:41 [exec] (Found 590 warnings) Compiling jalview-js/src/jalview/datamodel build 08-Jun-2020 23:03:41 [exec] (Found 603 warnings) Compiling jalview-js/src/jalview/datamodel build 08-Jun-2020 23:03:41 [exec] (Found 604 warnings) Compiling jalview-js/src/jalview/datamodel build 08-Jun-2020 23:03:41 [exec] (Found 605 warnings) Compiling jalview-js/src/jalview/datamodel build 08-Jun-2020 23:03:41 [exec] (Found 608 warnings) Compiling jalview-js/src/jalview/datamodel build 08-Jun-2020 23:03:41 [exec] (Found 609 warnings) Compiling jalview-js/src/jalview/datamodel build 08-Jun-2020 23:03:41 [exec] (Found 610 warnings) Compiling jalview-js/src/jalview/datamodel build 08-Jun-2020 23:03:41 [exec] (Found 616 warnings) Compiling jalview-js/src/jalview/datamodel build 08-Jun-2020 23:03:41 [exec] (Found 620 warnings) Compiling jalview-js/src/jalview/datamodel build 08-Jun-2020 23:03:41 [exec] (Found 622 warnings) Compiling jalview-js/src/jalview/datamodel build 08-Jun-2020 23:03:41 [exec] (Found 623 warnings) Compiling jalview-js/src/jalview/datamodel build 08-Jun-2020 23:03:41 [exec] (Found 631 warnings) Compiling jalview-js/src/jalview/datamodel build 08-Jun-2020 23:03:41 [exec] (Found 632 warnings) Compiling jalview-js/src/jalview/datamodel build 08-Jun-2020 23:03:41 [exec] (Found 635 warnings) Compiling jalview-js/src/jalview/datamodel build 08-Jun-2020 23:03:41 [exec] (Found 641 warnings) Compiling jalview-js/src/jalview/datamodel build 08-Jun-2020 23:03:41 [exec] (Found 643 warnings) Compiling jalview-js/src/jalview/datamodel build 08-Jun-2020 23:03:41 [exec] (Found 644 warnings) Compiling jalview-js/src/jalview/datamodel build 08-Jun-2020 23:03:42 [exec] (Found 644 warnings) Compiling jalview-js/src/jalview/datamodel/features build 08-Jun-2020 23:03:42 [exec] (Found 646 warnings) Compiling jalview-js/src/jalview/datamodel/features build 08-Jun-2020 23:03:42 [exec] (Found 646 warnings) Compiling jalview-js/src/jalview/exceptions build 08-Jun-2020 23:03:42 [exec] (Found 646 warnings) Compiling jalview-js/src/jalview/ext/android build 08-Jun-2020 23:03:42 [exec] (Found 646 warnings) Compiling jalview-js/src/jalview/ext/ensembl build 08-Jun-2020 23:03:42 [exec] (Found 647 warnings) Compiling jalview-js/src/jalview/ext/ensembl build 08-Jun-2020 23:03:42 [exec] (Found 649 warnings) Compiling jalview-js/src/jalview/ext/ensembl build 08-Jun-2020 23:03:42 [exec] (Found 652 warnings) Compiling jalview-js/src/jalview/ext/htsjdk build 08-Jun-2020 23:03:42 [exec] (Found 653 warnings) Compiling jalview-js/src/jalview/ext/htsjdk build 08-Jun-2020 23:03:42 [exec] (Found 655 warnings) Compiling jalview-js/src/jalview/ext/jmol build 08-Jun-2020 23:03:42 [exec] (Found 657 warnings) Compiling jalview-js/src/jalview/ext/jmol build 08-Jun-2020 23:03:42 [exec] (Found 658 warnings) Compiling jalview-js/src/jalview/ext/paradise build 08-Jun-2020 23:03:42 [exec] (Found 658 warnings) Compiling jalview-js/src/jalview/ext/rbvi/chimera build 08-Jun-2020 23:03:42 [exec] (Found 660 warnings) Compiling jalview-js/src/jalview/ext/rbvi/chimera build 08-Jun-2020 23:03:42 [exec] (Found 660 warnings) Compiling jalview-js/src/jalview/ext/so build 08-Jun-2020 23:03:42 [exec] (Found 660 warnings) Compiling jalview-js/src/jalview/ext/varna build 08-Jun-2020 23:03:42 [exec] (Found 660 warnings) Compiling jalview-js/src/jalview/fts/api build 08-Jun-2020 23:03:42 [exec] (Found 661 warnings) Compiling jalview-js/src/jalview/fts/api build 08-Jun-2020 23:03:42 [exec] (Found 662 warnings) Compiling jalview-js/src/jalview/fts/core build 08-Jun-2020 23:03:42 [exec] (Found 675 warnings) Compiling jalview-js/src/jalview/fts/core build 08-Jun-2020 23:03:42 [exec] (Found 678 warnings) Compiling jalview-js/src/jalview/fts/core build 08-Jun-2020 23:03:42 [exec] (Found 679 warnings) Compiling jalview-js/src/jalview/fts/core build 08-Jun-2020 23:03:42 [exec] (Found 701 warnings) Compiling jalview-js/src/jalview/fts/service/pdb build 08-Jun-2020 23:03:42 [exec] (Found 702 warnings) Compiling jalview-js/src/jalview/fts/service/pdb build 08-Jun-2020 23:03:42 [exec] (Found 702 warnings) Compiling jalview-js/src/jalview/fts/service/uniprot build 08-Jun-2020 23:03:42 [exec] (Found 724 warnings) Compiling jalview-js/src/jalview/fts/service/uniprot build 08-Jun-2020 23:03:42 [exec] (Found 724 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 728 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 729 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 731 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 736 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 740 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 746 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 749 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 750 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 751 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 753 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 762 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 763 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 817 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 818 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 819 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 825 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 827 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 829 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 834 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 836 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 840 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 841 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 842 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 843 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 849 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 850 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 853 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 854 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 855 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 864 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 865 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 866 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 872 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 874 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 876 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 877 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 881 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 890 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 905 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 906 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 907 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 917 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 925 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 935 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 953 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 954 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 982 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 1012 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 1019 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 1078 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 1110 warnings) Compiling jalview-js/src/jalview/gui build 08-Jun-2020 23:03:43 [exec] (Found 1110 warnings) Compiling jalview-js/src/jalview/httpserver build 08-Jun-2020 23:03:43 [exec] (Found 1110 warnings) Compiling jalview-js/src/jalview/io build 08-Jun-2020 23:03:43 [exec] (Found 1115 warnings) Compiling jalview-js/src/jalview/io build 08-Jun-2020 23:03:43 [exec] (Found 1117 warnings) Compiling jalview-js/src/jalview/io build 08-Jun-2020 23:03:43 [exec] (Found 1119 warnings) Compiling jalview-js/src/jalview/io build 08-Jun-2020 23:03:43 [exec] (Found 1121 warnings) Compiling jalview-js/src/jalview/io build 08-Jun-2020 23:03:43 [exec] (Found 1142 warnings) Compiling jalview-js/src/jalview/io build 08-Jun-2020 23:03:43 [exec] (Found 1143 warnings) Compiling jalview-js/src/jalview/io build 08-Jun-2020 23:03:43 [exec] (Found 1145 warnings) Compiling jalview-js/src/jalview/io build 08-Jun-2020 23:03:43 [exec] (Found 1149 warnings) Compiling jalview-js/src/jalview/io build 08-Jun-2020 23:03:43 [exec] (Found 1150 warnings) Compiling jalview-js/src/jalview/io build 08-Jun-2020 23:03:43 [exec] (Found 1151 warnings) Compiling jalview-js/src/jalview/io build 08-Jun-2020 23:03:43 [exec] (Found 1152 warnings) Compiling jalview-js/src/jalview/io build 08-Jun-2020 23:03:43 [exec] (Found 1190 warnings) Compiling jalview-js/src/jalview/io build 08-Jun-2020 23:03:43 [exec] (Found 1193 warnings) Compiling jalview-js/src/jalview/io build 08-Jun-2020 23:03:43 [exec] (Found 1212 warnings) Compiling jalview-js/src/jalview/io build 08-Jun-2020 23:03:43 [exec] (Found 1213 warnings) Compiling jalview-js/src/jalview/io build 08-Jun-2020 23:03:43 [exec] (Found 1214 warnings) Compiling jalview-js/src/jalview/io build 08-Jun-2020 23:03:43 [exec] (Found 1227 warnings) Compiling jalview-js/src/jalview/io build 08-Jun-2020 23:03:43 [exec] (Found 1288 warnings) Compiling jalview-js/src/jalview/io build 08-Jun-2020 23:03:43 [exec] (Found 1289 warnings) Compiling jalview-js/src/jalview/io build 08-Jun-2020 23:03:43 [exec] (Found 1371 warnings) Compiling jalview-js/src/jalview/io build 08-Jun-2020 23:03:43 [exec] (Found 1376 warnings) Compiling jalview-js/src/jalview/io build 08-Jun-2020 23:03:43 [exec] (Found 1376 warnings) Compiling jalview-js/src/jalview/io/cache build 08-Jun-2020 23:03:43 [exec] (Found 1376 warnings) Compiling jalview-js/src/jalview/io/gff build 08-Jun-2020 23:03:43 [exec] (Found 1377 warnings) Compiling jalview-js/src/jalview/io/gff build 08-Jun-2020 23:03:43 [exec] (Found 1377 warnings) Compiling jalview-js/src/jalview/io/packed build 08-Jun-2020 23:03:43 [exec] (Found 1383 warnings) Compiling jalview-js/src/jalview/io/packed build 08-Jun-2020 23:03:43 [exec] (Found 1385 warnings) Compiling jalview-js/src/jalview/io/packed build 08-Jun-2020 23:03:43 [exec] (Found 1385 warnings) Compiling jalview-js/src/jalview/io/vamsas build 08-Jun-2020 23:03:43 [exec] (Found 1403 warnings) Compiling jalview-js/src/jalview/io/vamsas build 08-Jun-2020 23:03:43 [exec] (Found 1414 warnings) Compiling jalview-js/src/jalview/io/vamsas build 08-Jun-2020 23:03:43 [exec] (Found 1415 warnings) Compiling jalview-js/src/jalview/io/vamsas build 08-Jun-2020 23:03:43 [exec] (Found 1428 warnings) Compiling jalview-js/src/jalview/io/vamsas build 08-Jun-2020 23:03:43 [exec] (Found 1432 warnings) Compiling jalview-js/src/jalview/io/vamsas build 08-Jun-2020 23:03:43 [exec] (Found 1444 warnings) Compiling jalview-js/src/jalview/io/vamsas build 08-Jun-2020 23:03:43 [exec] (Found 1448 warnings) Compiling jalview-js/src/jalview/io/vcf build 08-Jun-2020 23:03:43 [exec] (Found 1448 warnings) Compiling jalview-js/src/jalview/javascript build 08-Jun-2020 23:03:43 [exec] (Found 1449 warnings) Compiling jalview-js/src/jalview/javascript/json build 08-Jun-2020 23:03:43 [exec] (Found 1449 warnings) Compiling jalview-js/src/jalview/javascript/log4j build 08-Jun-2020 23:03:43 [exec] (Found 1451 warnings) Compiling jalview-js/src/jalview/javascript/log4j build 08-Jun-2020 23:03:43 [exec] (Found 1453 warnings) Compiling jalview-js/src/jalview/javascript/log4j build 08-Jun-2020 23:03:43 [exec] (Found 1454 warnings) Compiling jalview-js/src/jalview/javascript/log4j/spi build 08-Jun-2020 23:03:43 [exec] (Found 1454 warnings) Compiling jalview-js/src/jalview/javascript/web build 08-Jun-2020 23:03:43 [exec] (Found 1454 warnings) Compiling jalview-js/src/jalview/jbgui build 08-Jun-2020 23:03:43 [exec] (Found 1455 warnings) Compiling jalview-js/src/jalview/jbgui build 08-Jun-2020 23:03:43 [exec] (Found 1456 warnings) Compiling jalview-js/src/jalview/jbgui build 08-Jun-2020 23:03:43 [exec] (Found 1459 warnings) Compiling jalview-js/src/jalview/jbgui build 08-Jun-2020 23:03:43 [exec] (Found 1460 warnings) Compiling jalview-js/src/jalview/jbgui build 08-Jun-2020 23:03:43 [exec] (Found 1461 warnings) Compiling jalview-js/src/jalview/jbgui build 08-Jun-2020 23:03:43 [exec] (Found 1462 warnings) Compiling jalview-js/src/jalview/jbgui build 08-Jun-2020 23:03:43 [exec] (Found 1464 warnings) Compiling jalview-js/src/jalview/jbgui build 08-Jun-2020 23:03:43 [exec] (Found 1472 warnings) Compiling jalview-js/src/jalview/jbgui build 08-Jun-2020 23:03:43 [exec] (Found 1473 warnings) Compiling jalview-js/src/jalview/jbgui build 08-Jun-2020 23:03:43 [exec] (Found 1478 warnings) Compiling jalview-js/src/jalview/jbgui build 08-Jun-2020 23:03:43 [exec] (Found 1480 warnings) Compiling jalview-js/src/jalview/jbgui build 08-Jun-2020 23:03:43 [exec] (Found 1481 warnings) Compiling jalview-js/src/jalview/jbgui build 08-Jun-2020 23:03:43 [exec] (Found 1484 warnings) Compiling jalview-js/src/jalview/jbgui build 08-Jun-2020 23:03:43 [exec] (Found 1484 warnings) Compiling jalview-js/src/jalview/json/binding/biojs build 08-Jun-2020 23:03:43 [exec] (Found 1484 warnings) Compiling jalview-js/src/jalview/json/binding/biojson/v1 build 08-Jun-2020 23:03:43 [exec] (Found 1484 warnings) Compiling jalview-js/src/jalview/math build 08-Jun-2020 23:03:43 [exec] (Found 1516 warnings) Compiling jalview-js/src/jalview/project build 08-Jun-2020 23:03:43 [exec] (Found 1516 warnings) Compiling jalview-js/src/jalview/renderer build 08-Jun-2020 23:03:43 [exec] (Found 1517 warnings) Compiling jalview-js/src/jalview/renderer build 08-Jun-2020 23:03:43 [exec] (Found 1517 warnings) Compiling jalview-js/src/jalview/renderer/seqfeatures build 08-Jun-2020 23:03:43 [exec] (Found 1517 warnings) Compiling jalview-js/src/jalview/rest build 08-Jun-2020 23:03:43 [exec] (Found 1517 warnings) Compiling jalview-js/src/jalview/schemes build 08-Jun-2020 23:03:43 [exec] (Found 1517 warnings) Compiling jalview-js/src/jalview/structure build 08-Jun-2020 23:03:43 [exec] (Found 1517 warnings) Compiling jalview-js/src/jalview/structures/models build 08-Jun-2020 23:03:43 [exec] (Found 1517 warnings) Compiling jalview-js/src/jalview/urls build 08-Jun-2020 23:03:43 [exec] (Found 1520 warnings) Compiling jalview-js/src/jalview/urls build 08-Jun-2020 23:03:43 [exec] (Found 1520 warnings) Compiling jalview-js/src/jalview/urls/api build 08-Jun-2020 23:03:43 [exec] (Found 1520 warnings) Compiling jalview-js/src/jalview/urls/applet build 08-Jun-2020 23:03:43 [exec] (Found 1520 warnings) Compiling jalview-js/src/jalview/urls/desktop build 08-Jun-2020 23:03:43 [exec] (Found 1520 warnings) Compiling jalview-js/src/jalview/util build 08-Jun-2020 23:03:44 [exec] (Found 1521 warnings) Compiling jalview-js/src/jalview/util build 08-Jun-2020 23:03:44 [exec] (Found 1523 warnings) Compiling jalview-js/src/jalview/util build 08-Jun-2020 23:03:44 [exec] (Found 1527 warnings) Compiling jalview-js/src/jalview/util build 08-Jun-2020 23:03:44 [exec] (Found 1567 warnings) Compiling jalview-js/src/jalview/util build 08-Jun-2020 23:03:44 [exec] (Found 1568 warnings) Compiling jalview-js/src/jalview/util build 08-Jun-2020 23:03:44 [exec] (Found 1568 warnings) Compiling jalview-js/src/jalview/util/dialogrunner build 08-Jun-2020 23:03:44 [exec] (Found 1568 warnings) Compiling jalview-js/src/jalview/util build 08-Jun-2020 23:03:44 [exec] (Found 1568 warnings) Compiling jalview-js/src/jalview/util/matcher build 08-Jun-2020 23:03:44 [exec] (Found 1570 warnings) Compiling jalview-js/src/jalview/util/matcher build 08-Jun-2020 23:03:44 [exec] (Found 1570 warnings) Compiling jalview-js/src/jalview/viewmodel build 08-Jun-2020 23:03:44 [exec] (Found 1570 warnings) Compiling jalview-js/src/jalview/viewmodel/annotationfilter build 08-Jun-2020 23:03:44 [exec] (Found 1570 warnings) Compiling jalview-js/src/jalview/viewmodel/seqfeatures build 08-Jun-2020 23:03:44 [exec] (Found 1570 warnings) Compiling jalview-js/src/jalview/viewmodel/styles build 08-Jun-2020 23:03:44 [exec] (Found 1570 warnings) Compiling jalview-js/src/jalview/workers build 08-Jun-2020 23:03:44 [exec] (Found 1574 warnings) Compiling jalview-js/src/jalview/workers build 08-Jun-2020 23:03:44 [exec] (Found 1574 warnings) Compiling jalview-js/src/jalview/ws build 08-Jun-2020 23:03:44 [exec] (Found 1578 warnings) Compiling jalview-js/src/jalview/ws build 08-Jun-2020 23:03:44 [exec] (Found 1578 warnings) Compiling jalview-js/src/jalview/ws/dbsources build 08-Jun-2020 23:03:44 [exec] (Found 1579 warnings) Compiling jalview-js/src/jalview/ws/dbsources build 08-Jun-2020 23:03:44 [exec] (Found 1579 warnings) Compiling jalview-js/src/jalview/ws/ebi build 08-Jun-2020 23:03:44 [exec] (Found 1579 warnings) Compiling jalview-js/src/jalview/ws/io/mime build 08-Jun-2020 23:03:44 [exec] (Found 1579 warnings) Compiling jalview-js/src/jalview/ws/jws1 build 08-Jun-2020 23:03:44 [exec] (Found 1583 warnings) Compiling jalview-js/src/jalview/ws/jws1 build 08-Jun-2020 23:03:44 [exec] (Found 1597 warnings) Compiling jalview-js/src/jalview/ws/jws1 build 08-Jun-2020 23:03:44 [exec] (Found 1611 warnings) Compiling jalview-js/src/jalview/ws/jws1 build 08-Jun-2020 23:03:44 [exec] (Found 1625 warnings) Compiling jalview-js/src/jalview/ws/jws1 build 08-Jun-2020 23:03:44 [exec] (Found 1632 warnings) Compiling jalview-js/src/jalview/ws/jws1 build 08-Jun-2020 23:03:44 [exec] (Found 1633 warnings) Compiling jalview-js/src/jalview/ws/jws2 build 08-Jun-2020 23:03:44 [exec] (Found 1634 warnings) Compiling jalview-js/src/jalview/ws/jws2 build 08-Jun-2020 23:03:44 [exec] (Found 1644 warnings) Compiling jalview-js/src/jalview/ws/jws2 build 08-Jun-2020 23:03:44 [exec] (Found 1651 warnings) Compiling jalview-js/src/jalview/ws/jws2 build 08-Jun-2020 23:03:44 [exec] (Found 1665 warnings) Compiling jalview-js/src/jalview/ws/jws2 build 08-Jun-2020 23:03:44 [exec] (Found 1668 warnings) Compiling jalview-js/src/jalview/ws/jws2 build 08-Jun-2020 23:03:44 [exec] (Found 1672 warnings) Compiling jalview-js/src/jalview/ws/jws2 build 08-Jun-2020 23:03:44 [exec] (Found 1678 warnings) Compiling jalview-js/src/jalview/ws/jws2 build 08-Jun-2020 23:03:44 [exec] (Found 1684 warnings) Compiling jalview-js/src/jalview/ws/jws2 build 08-Jun-2020 23:03:44 [exec] (Found 1698 warnings) Compiling jalview-js/src/jalview/ws/jws2 build 08-Jun-2020 23:03:44 [exec] (Found 1702 warnings) Compiling jalview-js/src/jalview/ws/jws2 build 08-Jun-2020 23:03:44 [exec] (Found 1727 warnings) Compiling jalview-js/src/jalview/ws/jws2 build 08-Jun-2020 23:03:44 [exec] (Found 1750 warnings) Compiling jalview-js/src/jalview/ws/jws2 build 08-Jun-2020 23:03:44 [exec] (Found 1751 warnings) Compiling jalview-js/src/jalview/ws/jws2 build 08-Jun-2020 23:03:44 [exec] (Found 1756 warnings) Compiling jalview-js/src/jalview/ws/jws2 build 08-Jun-2020 23:03:44 [exec] (Found 1762 warnings) Compiling jalview-js/src/jalview/ws/jws2/dm build 08-Jun-2020 23:03:44 [exec] (Found 1766 warnings) Compiling jalview-js/src/jalview/ws/jws2/dm build 08-Jun-2020 23:03:44 [exec] (Found 1769 warnings) Compiling jalview-js/src/jalview/ws/jws2/dm build 08-Jun-2020 23:03:44 [exec] (Found 1780 warnings) Compiling jalview-js/src/jalview/ws/jws2/dm build 08-Jun-2020 23:03:44 [exec] (Found 1787 warnings) Compiling jalview-js/src/jalview/ws/jws2/jabaws2 build 08-Jun-2020 23:03:44 [exec] (Found 1787 warnings) Compiling jalview-js/src/jalview/ws/params build 08-Jun-2020 23:03:44 [exec] (Found 1788 warnings) Compiling jalview-js/src/jalview/ws/params build 08-Jun-2020 23:03:44 [exec] (Found 1788 warnings) Compiling jalview-js/src/jalview/ws/params/simple build 08-Jun-2020 23:03:44 [exec] (Found 1789 warnings) Compiling jalview-js/src/jalview/ws/params/simple build 08-Jun-2020 23:03:44 [exec] (Found 1789 warnings) Compiling jalview-js/src/jalview/ws/rest build 08-Jun-2020 23:03:44 [exec] (Found 1790 warnings) Compiling jalview-js/src/jalview/ws/rest build 08-Jun-2020 23:03:44 [exec] (Found 1795 warnings) Compiling jalview-js/src/jalview/ws/rest build 08-Jun-2020 23:03:44 [exec] (Found 1796 warnings) Compiling jalview-js/src/jalview/ws/rest build 08-Jun-2020 23:03:44 [exec] (Found 1797 warnings) Compiling jalview-js/src/jalview/ws/rest build 08-Jun-2020 23:03:44 [exec] (Found 1803 warnings) Compiling jalview-js/src/jalview/ws/rest build 08-Jun-2020 23:03:44 [exec] (Found 1812 warnings) Compiling jalview-js/src/jalview/ws/rest build 08-Jun-2020 23:03:44 [exec] (Found 1818 warnings) Compiling jalview-js/src/jalview/ws/rest build 08-Jun-2020 23:03:44 [exec] (Found 1818 warnings) Compiling jalview-js/src/jalview/ws/rest/params build 08-Jun-2020 23:03:44 [exec] (Found 1818 warnings) Compiling jalview-js/src/jalview/ws/seqfetcher build 08-Jun-2020 23:03:44 [exec] (Found 1818 warnings) Compiling jalview-js/src/jalview/ws/sifts build 08-Jun-2020 23:03:44 [exec] (Found 1819 warnings) Compiling jalview-js/src/jalview/ws/sifts build 08-Jun-2020 23:03:44 [exec] (Found 1822 warnings) Compiling jalview-js/src/jalview/ws/uimodel build 08-Jun-2020 23:03:44 [exec] (Found 1822 warnings) Compiling jalview-js/src/jalview/ws/utils build 08-Jun-2020 23:03:44 [exec] (Found 1822 warnings) Compiling jalview-js/src/jalview/xml/binding/embl build 08-Jun-2020 23:03:44 [exec] (Found 1822 warnings) Compiling jalview-js/src/jalview/xml/binding/jalview build 08-Jun-2020 23:03:44 [exec] (Found 1822 warnings) Compiling jalview-js/src/jalview/xml/binding/sifts build 08-Jun-2020 23:03:44 [exec] (Found 1822 warnings) Compiling jalview-js/src/jalview/xml/binding/uniprot build 08-Jun-2020 23:03:44 [exec] (Found 1823 warnings) Compiling jalview-js/src/javajs/async build 08-Jun-2020 23:03:44 [exec] (Found 1824 warnings) Compiling jalview-js/src/javajs/async build 08-Jun-2020 23:03:44 [exec] (Found 1826 warnings) Compiling jalview-js/src/javajs/async build 08-Jun-2020 23:03:44 [exec] (Found 1832 warnings) Compiling jalview-js/src/javajs/async build 08-Jun-2020 23:03:44 [exec] (Found 1835 warnings) Compiling jalview-js/src/mc_view build 08-Jun-2020 23:03:44 [exec] (Found 1836 warnings) Compiling jalview-js/src/mc_view build 08-Jun-2020 23:03:44 [exec] (Found 1839 warnings) Compiling jalview-js/src/mc_view build 08-Jun-2020 23:03:44 [exec] (Found 1840 warnings) Compiling jalview-js/src/mc_view build 08-Jun-2020 23:03:44 [exec] (Found 1840 warnings) Compiling jalview-js/src/org/jibble/epsgraphics build 08-Jun-2020 23:03:44 [exec] (Found 1841 warnings) Compiling jalview-js/src/org/jibble/epsgraphics build 08-Jun-2020 23:03:44 [exec] (Found 1847 warnings) Compiling jalview-js/src/org/jibble/epsgraphics build 08-Jun-2020 23:03:44 [exec] (Found 1847 warnings) Compiling jalview-js/src/org/stackoverflowusers/file build 08-Jun-2020 23:03:44 [exec] (Found 1847 warnings) Compiling jalview-js/src/swingjs/api build 08-Jun-2020 23:03:44 [exec] (Found 1847 warnings) Compiling jalview-js/src/swingjs/api/js build 08-Jun-2020 23:03:44 [exec] (Found 1848 warnings) Compiling jalview-js/src/swingjs/api/js build 08-Jun-2020 23:03:44 [exec] (Found 1849 warnings) Compiling jalview-js/src/uk/ac/ebi/picr/model build 08-Jun-2020 23:03:44 [exec] (Found 1851 warnings) Compiling jalview-js/src/uk/ac/ebi/picr/model build 08-Jun-2020 23:03:44 [exec] (Found 1852 warnings) Compiling jalview-js/src/uk/ac/ebi/picr/model build 08-Jun-2020 23:03:44 [exec] (Found 1854 warnings) Compiling jalview-js/src/uk/ac/ebi/picr/model build 08-Jun-2020 23:03:44 [exec] (Found 1857 warnings) Compiling jalview-js/src/uk/ac/ebi/www build 08-Jun-2020 23:03:44 [exec] (Found 1860 warnings) Compiling jalview-js/src/uk/ac/ebi/www build 08-Jun-2020 23:03:44 [exec] (Found 1863 warnings) Compiling jalview-js/src/uk/ac/ebi/www build 08-Jun-2020 23:03:44 [exec] (Found 1870 warnings) Compiling jalview-js/src/uk/ac/ebi/www build 08-Jun-2020 23:03:44 [exec] (Found 1918 warnings) Compiling jalview-js/src/uk/ac/ebi/www build 08-Jun-2020 23:03:44 [exec] (Found 1960 warnings) Compiling jalview-js/src/uk/ac/ebi/www/picr/AccessionMappingService build 08-Jun-2020 23:03:44 [exec] (Found 1967 warnings) Compiling jalview-js/src/uk/ac/ebi/www/picr/AccessionMappingService build 08-Jun-2020 23:03:44 [exec] (Found 1967 warnings) Compiling jalview-js/src/vamsas build 08-Jun-2020 23:03:44 [exec] (Found 1968 warnings) Compiling jalview-js/src/vamsas/objects/simple build 08-Jun-2020 23:03:44 [exec] (Found 1970 warnings) Compiling jalview-js/src/vamsas/objects/simple build 08-Jun-2020 23:03:44 [exec] (Found 1971 warnings) Compiling jalview-js/src/vamsas/objects/simple build 08-Jun-2020 23:03:44 [exec] (Found 1973 warnings) Compiling jalview-js/src/vamsas/objects/simple build 08-Jun-2020 23:03:44 [exec] (Found 1974 warnings) Compiling jalview-js/src/vamsas/objects/simple build 08-Jun-2020 23:03:44 [exec] (Found 1976 warnings) Compiling jalview-js/src/vamsas/objects/simple build 08-Jun-2020 23:03:44 [exec] (Found 1977 warnings) Compiling jalview-js/src/vamsas/objects/simple build 08-Jun-2020 23:03:44 [exec] (Found 1979 warnings) Compiling jalview-js/src/vamsas/objects/simple build 08-Jun-2020 23:03:44 [exec] (Found 1980 warnings) Compiling jalview-js/src/vamsas/objects/simple build 08-Jun-2020 23:03:44 [exec] (Found 1982 warnings) Compiling jalview-js/src/vamsas/objects/simple build 08-Jun-2020 23:03:44 [exec] (Found 1983 warnings) Compiling jalview-js/src/vamsas/objects/simple build 08-Jun-2020 23:03:44 [exec] (Found 1985 warnings) Compiling jalview-js/src/vamsas/objects/simple build 08-Jun-2020 23:03:44 [exec] (Found 1986 warnings) Compiling jalview-js/src/vamsas/objects/simple build 08-Jun-2020 23:03:44 [exec] (Found 1988 warnings) Compiling jalview-js/src/vamsas/objects/simple build 08-Jun-2020 23:03:44 [exec] (Found 1989 warnings) Compiling jalview-js/src/vamsas/objects/simple build 08-Jun-2020 23:03:44 [exec] (Found 1991 warnings) Compiling jalview-js/src/vamsas/objects/simple build 08-Jun-2020 23:03:44 [exec] (Found 1992 warnings) Compiling jalview-js/src/vamsas/objects/simple build 08-Jun-2020 23:03:44 [exec] (Found 1993 warnings) Compiling jalview-js/src/vamsas/objects/simple build 08-Jun-2020 23:03:44 [exec] (Found 1995 warnings) Compiling jalview-js/src/vamsas/objects/simple build 08-Jun-2020 23:03:44 [exec] (Found 1997 warnings) Compiling jalview-js/src/vamsas/objects/simple build 08-Jun-2020 23:03:44 [exec] (Found 1998 warnings) Compiling jalview-js/src/vamsas/objects/simple build 08-Jun-2020 23:03:44 [exec] (Found 2000 warnings) Compiling jalview-js/src/vamsas/objects/simple build 08-Jun-2020 23:03:44 [exec] j2s.compiler.status = enable build 08-Jun-2020 23:03:44 [exec] j2s.compiler.java.version = 8 build 08-Jun-2020 23:03:44 [exec] #j2s compiler version set to 8 build 08-Jun-2020 23:03:44 [exec] j2s.break.on.error = false build 08-Jun-2020 23:03:44 [exec] j2s.compiler.mode = nodebug build 08-Jun-2020 23:03:44 [exec] j2s.site.directory = site build 08-Jun-2020 23:03:44 [exec] #j2s writing to /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site/swingjs/j2s build 08-Jun-2020 23:03:44 [exec] j2s.log.methods.declared = build 08-Jun-2020 23:03:44 [exec] j2s.log.methods.called = build 08-Jun-2020 23:03:44 [exec] j2s.excluded.paths = test;testng;utils build 08-Jun-2020 23:03:44 [exec] j2s.compiler.read.annotations = true build 08-Jun-2020 23:03:44 [exec] j2s.compiler.ignored.annotations = CallerSensitive;ConstructorProperties;Deprecated;Override;SafeVarargs;SuppressWarnings;FunctionalInterface;Documented;Inherited;Native;Repeatable;Retention; build 08-Jun-2020 23:03:44 [exec] j2s.testing = false build 08-Jun-2020 23:03:44 [exec] j2s.compiler.nonqualified.packages = build 08-Jun-2020 23:03:44 [exec] j2s.compiler.nonqualified.classes = build 08-Jun-2020 23:03:44 [exec] j2s.class.replacements = org.apache.log4j.->jalview.javascript.log4j. build 08-Jun-2020 23:03:44 [exec] j2s.template.html = template.html build 08-Jun-2020 23:03:44 [exec] J2S using HTML template /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/template.html build 08-Jun-2020 23:03:44 [exec] class replacement org.apache.log4j. --> jalview.javascript.log4j. build 08-Jun-2020 23:03:44 [exec] J2S building JavaScript jalview-js /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js Mon Jun 08 23:03:44 BST 2020 build 08-Jun-2020 23:03:44 [exec] J2S building JavaScript for 990 files build 08-Jun-2020 23:03:44 [exec] J2S transpiling (1/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/github/reinert/jjschema/Attributes.java build 08-Jun-2020 23:03:44 [exec] j2s copying resources from /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com to /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site/swingjs/j2s/com build 08-Jun-2020 23:03:44 [exec] J2S transpiling (2/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/AmpersandRule.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (3/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Any.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (4/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/BackG.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (5/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/BackMatch.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (6/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/BackRefRule.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (7/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Backup.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (8/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/BasicStringBufferLike.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (9/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Bits.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (10/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Boundary.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (11/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Bracket.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (12/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/CaseMgr.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (13/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/ChangeRule.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (14/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/CodeRule.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (15/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Ctrl.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (16/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Custom.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (17/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/CustomEndpoint.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (18/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/DirFileRegex.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (19/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/DotMulti.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (20/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/End.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (21/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/FastBracket.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (22/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/FastMulti.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (23/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/FileRegex.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (24/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Group.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (25/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/LeftRule.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (26/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Multi.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (27/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/MultiMin.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (28/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Multi_stage2.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (29/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/NoPattern.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (30/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/NonDirFileRegex.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (31/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/NotImplementedError.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (32/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/NullPattern.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (33/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/NullRule.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (34/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Or.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (35/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/OrMark.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (36/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/PartialBuffer.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (37/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Pattern.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (38/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/PatternSub.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (39/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/PopRule.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (40/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Prop.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (41/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Pthings.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (42/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/PushRule.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (43/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/RBuffer.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (44/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Range.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (45/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/RegOpt.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (46/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/RegRes.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (47/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/RegSyntax.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (48/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/RegSyntaxError.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (49/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Regex.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (50/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/RegexReader.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (51/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/RegexTokenizer.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (52/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/RegexWriter.java build 08-Jun-2020 23:03:44 [exec] >>>main found for com.stevesoft.pat.RegexWriter build 08-Jun-2020 23:03:44 [exec] J2S creating /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site/com_stevesoft_pat_RegexWriter.html build 08-Jun-2020 23:03:44 [exec] J2S transpiling (53/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/ReplaceRule.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (54/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Replacer.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (55/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/RightRule.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (56/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Rthings.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (57/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/RuleHolder.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (58/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Skip.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (59/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Skip2.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (60/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/SkipBMH.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (61/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Skipped.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (62/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/SpecialRule.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (63/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Start.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (64/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/StrPos.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (65/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/StringBufferLike.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (66/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/StringLike.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (67/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/StringRule.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (68/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/SubMark.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (69/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/TransPat.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (70/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Transformer.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (71/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/UniValidator.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (72/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/Validator.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (73/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/WantMoreTextReplaceRule.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (74/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/lookAhead.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (75/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/oneChar.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (76/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/parsePerl.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (77/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/patInf.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (78/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/patInt.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (79/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/wrap/CharArrayBufferWrap.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (80/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/wrap/CharArrayWrap.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (81/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/wrap/RandomAccessFileWrap.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (82/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/wrap/StringBufferWrap.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (83/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/wrap/StringWrap.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (84/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/com/stevesoft/pat/wrap/WriterWrap.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (85/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/edu/ucsf/rbvi/strucviz2/ChimUtils.java build 08-Jun-2020 23:03:44 [exec] j2s copying resources from /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext to /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site/swingjs/j2s/ext build 08-Jun-2020 23:03:44 [exec] J2S transpiling (86/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/edu/ucsf/rbvi/strucviz2/ChimeraChain.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (87/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/edu/ucsf/rbvi/strucviz2/ChimeraManager.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (88/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/edu/ucsf/rbvi/strucviz2/ChimeraModel.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (89/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/edu/ucsf/rbvi/strucviz2/ChimeraResidue.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (90/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/edu/ucsf/rbvi/strucviz2/ChimeraStructuralObject.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (91/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/edu/ucsf/rbvi/strucviz2/ChimeraTreeModel.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (92/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/edu/ucsf/rbvi/strucviz2/StructureManager.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (93/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/edu/ucsf/rbvi/strucviz2/StructureSettings.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (94/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/edu/ucsf/rbvi/strucviz2/port/ListenerThreads.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (95/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/vamsas/IRegistry.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (96/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/vamsas/IRegistryService.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (97/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/vamsas/IRegistryServiceLocator.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (98/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/vamsas/Jpred.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (99/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/vamsas/JpredService.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (100/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/vamsas/JpredServiceLocator.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (101/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/vamsas/JpredSoapBindingStub.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (102/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/vamsas/MuscleWS.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (103/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/vamsas/MuscleWSService.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (104/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/vamsas/MuscleWSServiceLocator.java build 08-Jun-2020 23:03:44 [exec] J2S transpiling (105/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/vamsas/MuscleWSSoapBindingStub.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (106/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/vamsas/RegistryServiceSoapBindingStub.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (107/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/vamsas/SeqSearchI.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (108/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/vamsas/SeqSearchServiceLocator.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (109/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/vamsas/SeqSearchServiceService.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (110/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/vamsas/SeqSearchServiceSoapBindingStub.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (111/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/vamsas/ServiceHandle.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (112/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/ext/vamsas/ServiceHandles.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (113/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/intervalstore/nonc/IntervalStore.java build 08-Jun-2020 23:03:45 [exec] j2s copying resources from /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/intervalstore to /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site/swingjs/j2s/intervalstore build 08-Jun-2020 23:03:45 [exec] J2S transpiling (114/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/intervalstore/nonc/IntervalStore0.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (115/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/AAFrequency.java build 08-Jun-2020 23:03:45 [exec] j2s copying resources from /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview to /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site/swingjs/j2s/jalview build 08-Jun-2020 23:03:45 [exec] J2S transpiling (116/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/AlignSeq.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (117/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/AlignmentAnnotationUtils.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (118/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/AlignmentSorter.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (119/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/AlignmentUtils.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (120/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/AnnotationSorter.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (121/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/AverageDistanceTree.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (122/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/CodingUtils.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (123/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/CodonComparator.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (124/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/Conservation.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (125/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/CrossRef.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (126/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/Dna.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (127/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/Finder.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (128/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/GeneticCodeI.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (129/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/GeneticCodes.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (130/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/Grouping.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (131/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/NJTree.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (132/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/PCA.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (133/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/ParseProperties.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (134/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/Rna.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (135/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/SecStrConsensus.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (136/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/SeqsetUtils.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (137/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/SequenceIdMatcher.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (138/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/StructureFrequency.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (139/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/TreeBuilder.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (140/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/TreeModel.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (141/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/WUSSParseException.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (142/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/scoremodels/DistanceScoreModel.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (143/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/scoremodels/FeatureDistanceModel.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (144/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/scoremodels/PIDModel.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (145/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/scoremodels/ScoreMatrix.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (146/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/scoremodels/ScoreModels.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (147/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/scoremodels/SimilarityParams.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (148/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/scoremodels/SimilarityScoreModel.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (149/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/analysis/scoremodels/SmithWatermanModel.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (150/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/AlignCalcManagerI.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (151/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/AlignCalcWorkerI.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (152/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/AlignExportSettingsI.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (153/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/AlignFrameI.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (154/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/AlignViewControllerGuiI.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (155/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/AlignViewControllerI.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (156/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/AlignViewportI.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (157/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/AlignmentColsCollectionI.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (158/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/AlignmentRowsCollectionI.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (159/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/AlignmentViewPanel.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (160/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/BuildDetailsI.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (161/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/ComplexAlignFile.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (162/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/DBRefEntryI.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (163/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/FeatureColourI.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (164/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/FeatureRenderer.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (165/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/FeatureSettingsControllerI.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (166/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/FeatureSettingsModelI.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (167/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/FeaturesDisplayedI.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (168/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/FeaturesSourceI.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (169/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/FinderI.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (170/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/JalviewApp.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (171/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/OOMHandlerI.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (172/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/RendererListenerI.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (173/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/RotatableCanvasI.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (174/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/SequenceRenderer.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (175/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/SequenceStructureBinding.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (176/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/SiftsClientI.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (177/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/SplitContainerI.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (178/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/StructureSelectionManagerProvider.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (179/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/ViewStyleI.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (180/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/analysis/PairwiseScoreModelI.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (181/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/analysis/ScoreModelI.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (182/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/analysis/SimilarityParamsI.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (183/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/api/structures/JalviewStructureDisplayI.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (184/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/APopupMenu.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (185/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/AlignFrame.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (186/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/AlignViewport.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (187/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/AlignmentPanel.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (188/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/AnnotationColourChooser.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (189/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/AnnotationColumnChooser.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (190/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/AnnotationLabels.java build 08-Jun-2020 23:03:45 [exec] J2S transpiling (191/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/AnnotationPanel.java build 08-Jun-2020 23:03:46 [exec] J2S transpiling (192/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/AnnotationRowFilter.java build 08-Jun-2020 23:03:46 [exec] J2S transpiling (193/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/AppletJmol.java build 08-Jun-2020 23:03:46 [exec] J2S transpiling (194/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/AppletJmolBinding.java build 08-Jun-2020 23:03:46 [exec] J2S transpiling (195/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/CutAndPasteTransfer.java build 08-Jun-2020 23:03:46 [exec] J2S transpiling (196/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/EditNameDialog.java build 08-Jun-2020 23:03:46 [exec] J2S transpiling (197/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/EmbmenuFrame.java build 08-Jun-2020 23:03:46 [exec] J2S transpiling (198/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/ExtJmol.java build 08-Jun-2020 23:03:46 [exec] J2S transpiling (199/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/FeatureColourChooser.java build 08-Jun-2020 23:03:46 [exec] J2S transpiling (200/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/FeatureRenderer.java build 08-Jun-2020 23:03:46 [exec] J2S transpiling (201/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/FeatureSettings.java build 08-Jun-2020 23:03:46 [exec] J2S transpiling (202/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/Finder.java build 08-Jun-2020 23:03:46 [exec] J2S transpiling (203/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/FontChooser.java build 08-Jun-2020 23:03:46 [exec] J2S transpiling (204/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/IdCanvas.java build 08-Jun-2020 23:03:46 [exec] J2S transpiling (205/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/IdPanel.java build 08-Jun-2020 23:03:46 [exec] J2S transpiling (206/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/IdwidthAdjuster.java build 08-Jun-2020 23:03:46 [exec] J2S transpiling (207/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/JVDialog.java build 08-Jun-2020 23:03:46 [exec] J2S transpiling (208/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/OverviewCanvas.java build 08-Jun-2020 23:03:46 [exec] >>class jalview.appletgui.OverviewCanvas extended java.awt.Component now extends java.awt.Label build 08-Jun-2020 23:03:46 [exec] J2S transpiling (209/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/OverviewPanel.java build 08-Jun-2020 23:03:46 [exec] J2S transpiling (210/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/PCAPanel.java build 08-Jun-2020 23:03:46 [exec] J2S transpiling (211/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/PaintRefresher.java build 08-Jun-2020 23:03:46 [exec] J2S transpiling (212/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/PairwiseAlignPanel.java build 08-Jun-2020 23:03:46 [exec] J2S transpiling (213/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/RedundancyPanel.java build 08-Jun-2020 23:03:46 [exec] J2S transpiling (214/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/RotatableCanvas.java build 08-Jun-2020 23:03:46 [exec] J2S transpiling (215/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/ScalePanel.java build 08-Jun-2020 23:03:46 [exec] J2S transpiling (216/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/SeqCanvas.java build 08-Jun-2020 23:03:46 [exec] J2S transpiling (217/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/SeqPanel.java build 08-Jun-2020 23:03:46 [exec] J2S transpiling (218/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/SequenceRenderer.java build 08-Jun-2020 23:03:46 [exec] J2S transpiling (219/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/SliderPanel.java build 08-Jun-2020 23:03:46 [exec] J2S transpiling (220/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/SplitFrame.java build 08-Jun-2020 23:03:46 [exec] J2S transpiling (221/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/TitledPanel.java build 08-Jun-2020 23:03:46 [exec] J2S transpiling (222/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/Tooltip.java build 08-Jun-2020 23:03:46 [exec] J2S transpiling (223/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/TreeCanvas.java build 08-Jun-2020 23:03:46 [exec] J2S transpiling (224/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/TreePanel.java build 08-Jun-2020 23:03:46 [exec] J2S transpiling (225/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/appletgui/UserDefinedColours.java build 08-Jun-2020 23:03:46 [exec] J2S transpiling (226/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/bin/AppletParams.java build 08-Jun-2020 23:03:46 [exec] >>>main found for jalview.bin.AppletParams build 08-Jun-2020 23:03:46 [exec] J2S creating /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site/jalview_bin_AppletParams.html build 08-Jun-2020 23:03:46 [exec] J2S transpiling (227/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/bin/ApplicationSingletonProvider.java build 08-Jun-2020 23:03:46 [exec] J2S transpiling (228/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/bin/ArgsParser.java build 08-Jun-2020 23:03:46 [exec] J2S transpiling (229/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/bin/BuildDetails.java build 08-Jun-2020 23:03:46 [exec] J2S transpiling (230/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/bin/Cache.java build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.Logger -> jalview.javascript.log4j.Logger build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.ConsoleAppender -> jalview.javascript.log4j.ConsoleAppender build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.ConsoleAppender -> jalview.javascript.log4j.ConsoleAppender build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.ConsoleAppender -> jalview.javascript.log4j.ConsoleAppender build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.Layout -> jalview.javascript.log4j.Layout build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.SimpleLayout -> jalview.javascript.log4j.SimpleLayout build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.SimpleLayout -> jalview.javascript.log4j.SimpleLayout build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.SimpleLayout -> jalview.javascript.log4j.SimpleLayout build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.Logger -> jalview.javascript.log4j.Logger build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.Appender -> jalview.javascript.log4j.Appender build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.Logger -> jalview.javascript.log4j.Logger build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.Logger -> jalview.javascript.log4j.Logger build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.Logger -> jalview.javascript.log4j.Logger build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.Logger -> jalview.javascript.log4j.Logger build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.Logger -> jalview.javascript.log4j.Logger build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.Appender -> jalview.javascript.log4j.Appender build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.Logger -> jalview.javascript.log4j.Logger build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.Level -> jalview.javascript.log4j.Level build 08-Jun-2020 23:03:46 [exec] org.apache.log4j.Appender -> jalview.javascript.log4j.Appender build 08-Jun-2020 23:03:46 [exec] J2S transpiling (231/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/bin/Jalview.java build 08-Jun-2020 23:03:46 [exec] >>>main found for jalview.bin.Jalview build 08-Jun-2020 23:03:46 [exec] J2S creating /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site/jalview_bin_Jalview.html build 08-Jun-2020 23:03:46 [exec] J2S transpiling (232/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/bin/JalviewAppLoader.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (233/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/bin/JalviewJS2.java build 08-Jun-2020 23:03:47 [exec] >>>main found for jalview.bin.JalviewJS2 build 08-Jun-2020 23:03:47 [exec] J2S creating /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site/jalview_bin_JalviewJS2.html build 08-Jun-2020 23:03:47 [exec] J2S transpiling (234/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/bin/JalviewJSApi.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (235/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/bin/JalviewLite.java build 08-Jun-2020 23:03:47 [exec] J2S creating /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site/jalview_bin_JalviewLite_applet.html build 08-Jun-2020 23:03:47 [exec] J2S transpiling (236/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/bin/JalviewLiteURLRetrieve.java build 08-Jun-2020 23:03:47 [exec] J2S creating /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site/jalview_bin_JalviewLiteURLRetrieve_applet.html build 08-Jun-2020 23:03:47 [exec] J2S transpiling (237/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/commands/ChangeCaseCommand.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (238/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/commands/CommandI.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (239/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/commands/EditCommand.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (240/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/commands/OrderCommand.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (241/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/commands/RemoveGapColCommand.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (242/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/commands/RemoveGapsCommand.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (243/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/commands/SlideSequencesCommand.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (244/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/commands/TrimRegionCommand.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (245/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/controller/AlignViewController.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (246/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/controller/FeatureSettingsController.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (247/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/controller/FeatureSettingsControllerGuiI.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (248/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/ASequence.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (249/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/ASequenceI.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (250/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/AlignExportSettingsAdapter.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (251/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/AlignedCodon.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (252/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/AlignedCodonFrame.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (253/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/Alignment.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (254/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/AlignmentAnnotation.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (255/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/AlignmentExportData.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (256/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/AlignmentI.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (257/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/AlignmentOrder.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (258/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/AlignmentView.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (259/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/AllColsCollection.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (260/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/AllColsIterator.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (261/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/AllRowsCollection.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (262/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/AllRowsIterator.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (263/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/AnnotatedCollectionI.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (264/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/Annotation.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (265/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/BinaryNode.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (266/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/BinarySequence.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (267/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/CigarArray.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (268/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/CigarBase.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (269/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/CigarCigar.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (270/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/CigarSimple.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (271/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/ColumnSelection.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (272/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/ContiguousI.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (273/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/DBRefEntry.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (274/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/DBRefSource.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (275/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/FeatureProperties.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (276/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/GeneLociI.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (277/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/GraphLine.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (278/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/HiddenColumns.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (279/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/HiddenColumnsCursor.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (280/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/HiddenCursorPosition.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (281/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/HiddenSequences.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (282/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/IncompleteCodonException.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (283/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/Mapping.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (284/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/MappingType.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (285/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/NodeTransformI.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (286/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/PDBEntry.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (287/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/Point.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (288/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/Profile.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (289/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/ProfileI.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (290/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/Profiles.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (291/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/ProfilesI.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (292/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/Provenance.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (293/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/ProvenanceEntry.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (294/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/Range.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (295/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/RangeElementsIterator.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (296/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/RangeIterator.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (297/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/ResidueCount.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (298/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/RnaViewerModel.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (299/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/SearchResultMatchI.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (300/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/SearchResults.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (301/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/SearchResultsI.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (302/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/SecondaryStructureAnnotation.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (303/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/SeqCigar.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (304/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/Sequence.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (305/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/SequenceCollectionI.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (306/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/SequenceCursor.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (307/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/SequenceDummy.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (308/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/SequenceFeature.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (309/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/SequenceGroup.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (310/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/SequenceI.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (311/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/SequenceNode.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (312/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/SequencePoint.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (313/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/StartRegionIterator.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (314/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/StructureViewerModel.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (315/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/VisibleColsCollection.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (316/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/VisibleContigsIterator.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (317/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/VisibleRowsCollection.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (318/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/VisibleRowsIterator.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (319/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/features/FeatureAttributeType.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (320/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/features/FeatureAttributes.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (321/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/features/FeatureLocationI.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (322/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/features/FeatureMatcher.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (323/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/features/FeatureMatcherI.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (324/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/features/FeatureMatcherSet.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (325/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/features/FeatureMatcherSetI.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (326/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/features/FeatureSource.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (327/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/features/FeatureSourceI.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (328/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/features/FeatureSources.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (329/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/features/FeatureStore.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (330/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/features/SequenceFeatures.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (331/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/datamodel/features/SequenceFeaturesI.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (332/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/exceptions/JalviewException.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (333/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/android/ContainerHelpers.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (334/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/android/SparseDoubleArray.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (335/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/android/SparseIntArray.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (336/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/android/SparseShortArray.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (337/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/ensembl/EnsemblCdna.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (338/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/ensembl/EnsemblCds.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (339/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/ensembl/EnsemblData.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (340/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/ensembl/EnsemblFeatures.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (341/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/ensembl/EnsemblGene.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (342/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/ensembl/EnsemblGenome.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (343/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/ensembl/EnsemblGenomes.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (344/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/ensembl/EnsemblInfo.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (345/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/ensembl/EnsemblLookup.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (346/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/ensembl/EnsemblMap.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (347/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/ensembl/EnsemblProtein.java build 08-Jun-2020 23:03:47 [exec] J2S transpiling (348/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/ensembl/EnsemblRestClient.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (349/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/ensembl/EnsemblSeqProxy.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (350/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/ensembl/EnsemblSequenceFetcher.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (351/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/ensembl/EnsemblSymbol.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (352/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/ensembl/EnsemblXref.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (353/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/ensembl/Species.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (354/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/htsjdk/HtsContigDb.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (355/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/htsjdk/VCFReader.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (356/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/jmol/JalviewJmolBinding.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (357/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/jmol/JmolCommands.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (358/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/jmol/JmolParser.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (359/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/paradise/Annotate3D.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (360/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/rbvi/chimera/AtomSpecModel.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (361/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/rbvi/chimera/ChimeraCommands.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (362/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/rbvi/chimera/ChimeraListener.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (363/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (364/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/so/SequenceOntology.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (365/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/varna/JalviewVarnaBinding.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (366/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/varna/RnaModel.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (367/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ext/varna/VarnaCommands.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (368/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/fts/api/FTSData.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (369/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/fts/api/FTSDataColumnI.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (370/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/fts/api/FTSRestClientI.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (371/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/fts/api/GFTSPanelI.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (372/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/fts/core/DecimalFormatTableCellRenderer.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (373/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/fts/core/FTSDataColumnPreferences.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (374/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/fts/core/FTSRestClient.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (375/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/fts/core/FTSRestRequest.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (376/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/fts/core/FTSRestResponse.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (377/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/fts/core/GFTSPanel.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (378/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/fts/service/pdb/PDBFTSPanel.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (379/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/fts/service/pdb/PDBFTSRestClient.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (380/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/fts/service/uniprot/UniProtFTSRestClient.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (381/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/fts/service/uniprot/UniprotFTSPanel.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (382/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/AlignExportOptions.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (383/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/AlignFrame.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (384/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/AlignViewport.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (385/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/AlignmentPanel.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (386/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/AnnotationChooser.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (387/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/AnnotationColourChooser.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (388/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/AnnotationColumnChooser.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (389/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/AnnotationExporter.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (390/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/AnnotationLabels.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (391/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/AnnotationPanel.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (392/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/AnnotationRowFilter.java build 08-Jun-2020 23:03:48 [exec] J2S transpiling (393/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/AppJmol.java build 08-Jun-2020 23:03:49 [exec] J2S transpiling (394/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/AppJmolBinding.java build 08-Jun-2020 23:03:49 [exec] J2S transpiling (395/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/AppVarna.java build 08-Jun-2020 23:03:49 [exec] J2S transpiling (396/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/AppVarnaBinding.java build 08-Jun-2020 23:03:49 [exec] J2S transpiling (397/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/AquaInternalFrameManager.java build 08-Jun-2020 23:03:49 [exec] J2S transpiling (398/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/AssociatePdbFileWithSeq.java build 08-Jun-2020 23:03:49 [exec] J2S transpiling (399/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/BlogReader.java build 08-Jun-2020 23:03:49 [exec] J2S transpiling (400/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/CalculationChooser.java build 08-Jun-2020 23:03:49 [exec] J2S transpiling (401/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/ChimeraViewFrame.java build 08-Jun-2020 23:03:49 [exec] J2S transpiling (402/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/ColourMenuHelper.java build 08-Jun-2020 23:03:49 [exec] J2S transpiling (403/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/ComboBoxTooltipRenderer.java build 08-Jun-2020 23:03:49 [exec] J2S transpiling (404/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/Console.java build 08-Jun-2020 23:03:49 [exec] org.apache.log4j.Layout -> jalview.javascript.log4j.Layout build 08-Jun-2020 23:03:49 [exec] org.apache.log4j.SimpleLayout -> jalview.javascript.log4j.SimpleLayout build 08-Jun-2020 23:03:49 [exec] org.apache.log4j.SimpleLayout -> jalview.javascript.log4j.SimpleLayout build 08-Jun-2020 23:03:49 [exec] org.apache.log4j.SimpleLayout -> jalview.javascript.log4j.SimpleLayout build 08-Jun-2020 23:03:49 [exec] org.apache.log4j.Logger -> jalview.javascript.log4j.Logger build 08-Jun-2020 23:03:49 [exec] org.apache.log4j.Appender -> jalview.javascript.log4j.Appender build 08-Jun-2020 23:03:49 [exec] J2S transpiling (405/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/CrossRefAction.java build 08-Jun-2020 23:03:49 [exec] J2S transpiling (406/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/CutAndPasteHtmlTransfer.java build 08-Jun-2020 23:03:49 [exec] J2S transpiling (407/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/CutAndPasteTransfer.java build 08-Jun-2020 23:03:49 [exec] J2S transpiling (408/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/Desktop.java build 08-Jun-2020 23:03:49 [exec] J2S transpiling (409/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/EditNameDialog.java build 08-Jun-2020 23:03:49 [exec] J2S transpiling (410/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/FeatureEditor.java build 08-Jun-2020 23:03:49 [exec] J2S transpiling (411/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/FeatureRenderer.java build 08-Jun-2020 23:03:49 [exec] J2S transpiling (412/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/FeatureSettings.java build 08-Jun-2020 23:03:49 [exec] J2S transpiling (413/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/FeatureTypeSettings.java build 08-Jun-2020 23:03:49 [exec] J2S transpiling (414/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/Finder.java build 08-Jun-2020 23:03:49 [exec] J2S transpiling (415/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/FontChooser.java build 08-Jun-2020 23:03:49 [exec] J2S transpiling (416/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/Help.java build 08-Jun-2020 23:03:49 [exec] J2S transpiling (417/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/IProgressIndicator.java build 08-Jun-2020 23:03:49 [exec] J2S transpiling (418/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/IProgressIndicatorHandler.java build 08-Jun-2020 23:03:49 [exec] J2S transpiling (419/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/IdCanvas.java build 08-Jun-2020 23:03:49 [exec] J2S transpiling (420/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/IdPanel.java build 08-Jun-2020 23:03:49 [exec] J2S transpiling (421/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/IdwidthAdjuster.java build 08-Jun-2020 23:03:49 [exec] J2S transpiling (422/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/ImageExporter.java build 08-Jun-2020 23:03:49 [exec] J2S transpiling (423/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/JDatabaseTree.java build 08-Jun-2020 23:03:49 [exec] J2S transpiling (424/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/JalviewAppender.java build 08-Jun-2020 23:03:49 [exec] org.apache.log4j.WriterAppender -> jalview.javascript.log4j.WriterAppender build 08-Jun-2020 23:03:49 [exec] org.apache.log4j.spi.LoggingEvent -> jalview.javascript.log4j.spi.LoggingEvent build 08-Jun-2020 23:03:49 [exec] org.apache.log4j.spi.LoggingEvent -> jalview.javascript.log4j.spi.LoggingEvent build 08-Jun-2020 23:03:49 [exec] J2S transpiling (425/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/JalviewBooleanRadioButtons.java build 08-Jun-2020 23:03:49 [exec] J2S transpiling (426/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/JalviewChangeSupport.java build 08-Jun-2020 23:03:49 [exec] J2S transpiling (427/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/JalviewChimeraBindingModel.java build 08-Jun-2020 23:03:49 [exec] J2S transpiling (428/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/JalviewColourChooser.java build 08-Jun-2020 23:03:49 [exec] J2S transpiling (429/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/JalviewDialog.java build 08-Jun-2020 23:03:50 [exec] J2S transpiling (430/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/JvOptionPane.java build 08-Jun-2020 23:03:50 [exec] J2S transpiling (431/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/JvSwingUtils.java build 08-Jun-2020 23:03:50 [exec] J2S transpiling (432/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/LineartOptions.java build 08-Jun-2020 23:03:50 [exec] J2S transpiling (433/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/OOMWarning.java build 08-Jun-2020 23:03:50 [exec] J2S transpiling (434/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/OptsAndParamsPage.java build 08-Jun-2020 23:03:50 [exec] J2S transpiling (435/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/OptsParametersContainerI.java build 08-Jun-2020 23:03:50 [exec] J2S transpiling (436/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/OverviewCanvas.java build 08-Jun-2020 23:03:50 [exec] J2S transpiling (437/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/OverviewPanel.java build 08-Jun-2020 23:03:50 [exec] J2S transpiling (438/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/PCAPanel.java build 08-Jun-2020 23:03:50 [exec] J2S transpiling (439/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/PaintRefresher.java build 08-Jun-2020 23:03:50 [exec] J2S transpiling (440/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/PairwiseAlignPanel.java build 08-Jun-2020 23:03:50 [exec] J2S transpiling (441/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/PopupMenu.java build 08-Jun-2020 23:03:50 [exec] J2S transpiling (442/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/Preferences.java build 08-Jun-2020 23:03:50 [exec] J2S transpiling (443/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/ProgressBar.java build 08-Jun-2020 23:03:50 [exec] J2S transpiling (444/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/ProgressPanel.java build 08-Jun-2020 23:03:50 [exec] J2S transpiling (445/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/PromptUserConfig.java build 08-Jun-2020 23:03:50 [exec] J2S transpiling (446/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/RedundancyPanel.java build 08-Jun-2020 23:03:50 [exec] J2S transpiling (447/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/RestInputParamEditDialog.java build 08-Jun-2020 23:03:50 [exec] J2S transpiling (448/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/RestServiceEditorPane.java build 08-Jun-2020 23:03:50 [exec] J2S transpiling (449/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/RotatableCanvas.java build 08-Jun-2020 23:03:50 [exec] J2S transpiling (450/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/ScalePanel.java build 08-Jun-2020 23:03:50 [exec] J2S transpiling (451/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/SeqCanvas.java build 08-Jun-2020 23:03:50 [exec] J2S transpiling (452/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/SeqPanel.java build 08-Jun-2020 23:03:50 [exec] J2S transpiling (453/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/SequenceFetcher.java build 08-Jun-2020 23:03:50 [exec] J2S transpiling (454/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/SequenceRenderer.java build 08-Jun-2020 23:03:50 [exec] J2S transpiling (455/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/SliderPanel.java build 08-Jun-2020 23:03:50 [exec] J2S transpiling (456/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/SplashScreen.java build 08-Jun-2020 23:03:50 [exec] J2S transpiling (457/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/SplitFrame.java build 08-Jun-2020 23:03:50 [exec] J2S transpiling (458/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/StructureChooser.java build 08-Jun-2020 23:03:50 [exec] J2S transpiling (459/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/StructureViewer.java build 08-Jun-2020 23:03:50 [exec] J2S transpiling (460/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/StructureViewerBase.java build 08-Jun-2020 23:03:50 [exec] J2S transpiling (461/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/TextColourChooser.java build 08-Jun-2020 23:03:50 [exec] J2S transpiling (462/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/TreeCanvas.java build 08-Jun-2020 23:03:50 [exec] J2S transpiling (463/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/TreePanel.java build 08-Jun-2020 23:03:50 [exec] J2S transpiling (464/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/UserDefinedColours.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (465/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/UserQuestionnaireCheck.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (466/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/VamsasApplication.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (467/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/ViewSelectionMenu.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (468/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/WebserviceInfo.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (469/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/WsJobParameters.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (470/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/WsParamSetManager.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (471/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/gui/WsPreferences.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (472/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/httpserver/AbstractRequestHandler.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (473/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/httpserver/HttpServer.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (474/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/AMSAFile.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (475/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/AlignFile.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (476/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/AlignmentFileReaderI.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (477/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/AlignmentFileWriterI.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (478/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/AlignmentProperties.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (479/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/AnnotationFile.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (480/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/AppletFormatAdapter.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (481/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/BLCFile.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (482/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/BackupFilenameFilter.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (483/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/BackupFilenameParts.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (484/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/BackupFiles.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (485/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/BioJsHTMLOutput.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (486/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/ClustalFile.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (487/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/DBRefFile.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (488/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/DataSourceType.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (489/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/FastaFile.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (490/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/FeaturesFile.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (491/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/FileFormat.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (492/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/FileFormatException.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (493/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/FileFormatI.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (494/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/FileFormats.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (495/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/FileLoader.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (496/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/FileParse.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (497/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/FormatAdapter.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (498/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/HTMLOutput.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (499/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/HtmlFile.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (500/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/HtmlSvgOutput.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (501/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/IdentifyFile.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (502/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/InputStreamParser.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (503/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/JPredFile.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (504/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/JSONFile.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (505/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/JalviewFileChooser.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (506/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/JalviewFileFilter.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (507/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/JalviewFileView.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (508/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/JnetAnnotationMaker.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (509/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/MSFfile.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (510/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/ModellerDescription.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (511/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/NewickFile.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (512/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/PDBFeatureSettings.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (513/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/PIRFile.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (514/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/PfamFile.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (515/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/PhylipFile.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (516/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/PileUpfile.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (517/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/RnamlFile.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (518/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/ScoreMatrixFile.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (519/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/SequenceAnnotationReport.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (520/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/SimpleBlastFile.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (521/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/StockholmFile.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (522/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/StructureFile.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (523/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/TCoffeeScoreFile.java build 08-Jun-2020 23:03:51 [exec] J2S transpiling (524/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/VamsasAppDatastore.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (525/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/WSWUBlastClient.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (526/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/cache/AppCache.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (527/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/cache/JvCacheableInputBox.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (528/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/gff/ExonerateHelper.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (529/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/gff/Gff2Helper.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (530/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/gff/Gff3Helper.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (531/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/gff/GffConstants.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (532/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/gff/GffHelperBase.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (533/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/gff/GffHelperFactory.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (534/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/gff/GffHelperI.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (535/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/gff/InterProScanHelper.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (536/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/gff/SequenceOntologyFactory.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (537/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/gff/SequenceOntologyI.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (538/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/gff/SequenceOntologyLite.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (539/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/packed/DataProvider.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (540/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/packed/JalviewDataset.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (541/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/packed/ParsePackedSet.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (542/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/packed/SimpleDataProvider.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (543/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/vamsas/Datasetsequence.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (544/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/vamsas/DatastoreItem.java build 08-Jun-2020 23:03:52 [exec] org.apache.log4j.Logger -> jalview.javascript.log4j.Logger build 08-Jun-2020 23:03:52 [exec] org.apache.log4j.Logger -> jalview.javascript.log4j.Logger build 08-Jun-2020 23:03:52 [exec] J2S transpiling (545/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/vamsas/DatastoreRegistry.java build 08-Jun-2020 23:03:52 [exec] org.apache.log4j.Logger -> jalview.javascript.log4j.Logger build 08-Jun-2020 23:03:52 [exec] org.apache.log4j.Logger -> jalview.javascript.log4j.Logger build 08-Jun-2020 23:03:52 [exec] J2S transpiling (546/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/vamsas/Dbref.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (547/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/vamsas/LocalDocSyncObject.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (548/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/vamsas/Rangetype.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (549/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/vamsas/Sequencefeature.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (550/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/vamsas/Sequencemapping.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (551/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/vamsas/Tree.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (552/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/io/vcf/VCFLoader.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (553/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/JSFunctionExec.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (554/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/JalviewLiteJsApi.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (555/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/JsCallBack.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (556/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/JsSelectionSender.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (557/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/MouseOverListener.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (558/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/MouseOverStructureListener.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (559/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/json/JSON.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (560/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/log4j/Appender.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (561/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/log4j/ConsoleAppender.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (562/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/log4j/Layout.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (563/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/log4j/Level.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (564/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/log4j/Logger.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (565/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/log4j/Priority.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (566/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/log4j/SimpleLayout.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (567/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/log4j/WriterAppender.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (568/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/log4j/spi/LoggingEvent.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (569/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/log4j/spi/OptionHandler.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (570/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/web/Client.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (571/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/web/ClientResponse.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (572/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/javascript/web/WebResource.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (573/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GAlignFrame.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (574/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GAlignmentPanel.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (575/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GCutAndPasteHtmlTransfer.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (576/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GCutAndPasteTransfer.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (577/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GDesktop.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (578/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GFinder.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (579/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GFontChooser.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (580/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GPCAPanel.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (581/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GPairwiseAlignPanel.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (582/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GPreferences.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (583/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GRestInputParamEditDialog.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (584/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GRestServiceEditorPane.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (585/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GRnaStructureViewer.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (586/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GSequenceLink.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (587/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GSliderPanel.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (588/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GSplitFrame.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (589/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GStructureChooser.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (590/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GStructureViewer.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (591/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GTreePanel.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (592/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GUserDefinedColours.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (593/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GWebserviceInfo.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (594/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/jbgui/GWsPreferences.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (595/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/json/binding/biojs/BioJSReleasePojo.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (596/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/json/binding/biojs/BioJSRepositoryPojo.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (597/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/json/binding/biojson/v1/AlignmentAnnotationPojo.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (598/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/json/binding/biojson/v1/AlignmentPojo.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (599/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/json/binding/biojson/v1/AnnotationDisplaySettingPojo.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (600/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/json/binding/biojson/v1/AnnotationPojo.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (601/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/json/binding/biojson/v1/ColourSchemeMapper.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (602/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/json/binding/biojson/v1/SequenceFeaturesPojo.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (603/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/json/binding/biojson/v1/SequenceGrpPojo.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (604/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/json/binding/biojson/v1/SequencePojo.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (605/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/math/AlignmentDimension.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (606/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/math/Matrix.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (607/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/math/MatrixI.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (608/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/math/RotatableMatrix.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (609/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/math/SparseMatrix.java build 08-Jun-2020 23:03:52 [exec] J2S transpiling (610/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/project/Jalview2XML.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (611/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/renderer/AnnotationRenderer.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (612/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/renderer/AwtRenderPanelI.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (613/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/renderer/OverviewRenderer.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (614/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/renderer/OverviewResColourFinder.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (615/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/renderer/ResidueColourFinder.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (616/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/renderer/ResidueShader.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (617/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/renderer/ResidueShaderI.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (618/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/renderer/ScaleRenderer.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (619/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/renderer/seqfeatures/FeatureColourFinder.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (620/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/renderer/seqfeatures/FeatureRenderer.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (621/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/rest/RestHandler.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (622/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/AnnotationColourGradient.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (623/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/Blosum62ColourScheme.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (624/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/BuriedColourScheme.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (625/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/ClustalxColourScheme.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (626/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/ColourSchemeI.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (627/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/ColourSchemeLoader.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (628/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/ColourSchemeProperty.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (629/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/ColourSchemes.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (630/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/Consensus.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (631/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/CovariationColourScheme.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (632/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/FeatureColour.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (633/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/FeatureSettingsAdapter.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (634/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/FollowerColourScheme.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (635/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/HelixColourScheme.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (636/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/HydrophobicColourScheme.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (637/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/IdColourScheme.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (638/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/JalviewColourScheme.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (639/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/NucleotideColourScheme.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (640/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/PIDColourScheme.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (641/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/PurinePyrimidineColourScheme.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (642/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/RNAHelicesColour.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (643/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/RNAHelicesColourChooser.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (644/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/RNAInteractionColourScheme.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (645/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/ResidueColourScheme.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (646/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/ResidueProperties.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (647/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/ScoreColourScheme.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (648/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/StrandColourScheme.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (649/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/TCoffeeColourScheme.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (650/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/TaylorColourScheme.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (651/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/TurnColourScheme.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (652/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/UserColourScheme.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (653/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/schemes/ZappoColourScheme.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (654/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/structure/AlignmentViewPanelListener.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (655/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/structure/AtomSpec.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (656/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/structure/CommandListener.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (657/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/structure/SecondaryStructureListener.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (658/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/structure/SelectionListener.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (659/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/structure/SelectionSource.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (660/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/structure/SequenceListener.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (661/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/structure/StructureImportSettings.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (662/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/structure/StructureListener.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (663/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/structure/StructureMapping.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (664/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/structure/StructureMappingcommandSet.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (665/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/structure/StructureSelectionManager.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (666/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/structure/VamsasListener.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (667/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/structure/VamsasSource.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (668/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/structures/models/AAStructureBindingModel.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (669/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/structures/models/SequenceStructureBindingModel.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (670/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/urls/CustomUrlProvider.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (671/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/urls/IdOrgSettings.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (672/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/urls/IdentifiersUrlProvider.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (673/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/urls/UrlLinkDisplay.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (674/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/urls/UrlLinkTableModel.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (675/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/urls/UrlProvider.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (676/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/urls/UrlProviderImpl.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (677/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/urls/api/UrlProviderFactoryI.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (678/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/urls/api/UrlProviderI.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (679/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/urls/applet/AppletUrlProviderFactory.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (680/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/urls/desktop/DesktopUrlProviderFactory.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (681/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/AWTConsole.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (682/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/ArrayUtils.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (683/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/BrowserLauncher.java build 08-Jun-2020 23:03:53 [exec] native: ICStart build 08-Jun-2020 23:03:53 [exec] native: ICStop build 08-Jun-2020 23:03:53 [exec] native: ICLaunchURL build 08-Jun-2020 23:03:53 [exec] J2S transpiling (684/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/CaseInsensitiveString.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (685/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/ColorUtils.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (686/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/Comparison.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (687/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/DBRefUtils.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (688/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/DnaUtils.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (689/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/Format.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (690/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/GroupUrlLink.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (691/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/HttpUtils.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (692/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/ImageMaker.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (693/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/IntRangeComparator.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (694/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/JSONUtils.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (695/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/LinkedIdentityHashSet.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (696/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/MapList.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (697/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/MappingUtils.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (698/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/MathUtils.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (699/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/MessageManager.java build 08-Jun-2020 23:03:53 [exec] org.apache.log4j.Logger -> jalview.javascript.log4j.Logger build 08-Jun-2020 23:03:53 [exec] org.apache.log4j.Logger -> jalview.javascript.log4j.Logger build 08-Jun-2020 23:03:53 [exec] J2S transpiling (700/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/ParseHtmlBodyAndLinks.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (701/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/Platform.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (702/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/QuickSort.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (703/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/ReverseListIterator.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (704/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/SetUtils.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (705/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/ShiftList.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (706/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/SparseCount.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (707/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/StringUtils.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (708/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/TableSorter.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (709/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/UrlConstants.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (710/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/UrlLink.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (711/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/dialogrunner/DialogRunnerI.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (712/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/jarInputStreamProvider.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (713/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/matcher/Condition.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (714/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/matcher/Matcher.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (715/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/util/matcher/MatcherI.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (716/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/viewmodel/AlignmentViewport.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (717/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/viewmodel/OverviewDimensions.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (718/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/viewmodel/OverviewDimensionsHideHidden.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (719/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/viewmodel/OverviewDimensionsShowHidden.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (720/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/viewmodel/PCAModel.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (721/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/viewmodel/ViewportListenerI.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (722/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/viewmodel/ViewportProperties.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (723/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/viewmodel/ViewportRanges.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (724/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/viewmodel/annotationfilter/AnnotationFilterParameter.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (725/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/viewmodel/seqfeatures/FeatureRendererModel.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (726/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/viewmodel/seqfeatures/FeatureRendererSettings.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (727/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/viewmodel/seqfeatures/FeatureSettingsModel.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (728/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/viewmodel/seqfeatures/FeaturesDisplayed.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (729/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/viewmodel/styles/ViewStyle.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (730/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/workers/AlignCalcManager.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (731/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/workers/AlignCalcWorker.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (732/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/workers/AlignmentAnnotationFactory.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (733/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/workers/AnnotationProviderI.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (734/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/workers/AnnotationWorker.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (735/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/workers/ColumnCounterSetWorker.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (736/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/workers/ComplementConsensusThread.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (737/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/workers/ConsensusThread.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (738/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/workers/ConservationThread.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (739/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/workers/FeatureSetCounterI.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (740/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/workers/StrucConsensusThread.java build 08-Jun-2020 23:03:53 [exec] J2S transpiling (741/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/AWSThread.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (742/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/AWsJob.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (743/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/DBRefFetcher.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (744/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/HttpClientUtils.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (745/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/JobStateSummary.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (746/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/SequenceFetcher.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (747/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/SequenceFetcherFactory.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (748/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/WSClient.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (749/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/WSClientI.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (750/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/WSMenuEntryProviderI.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (751/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/dbsources/EbiFileRetrievedProxy.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (752/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/dbsources/EmblCdsSource.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (753/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/dbsources/EmblSource.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (754/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/dbsources/EmblXmlSource.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (755/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/dbsources/GeneDbSource.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (756/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/dbsources/Pdb.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (757/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/dbsources/Pfam.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (758/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/dbsources/PfamFull.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (759/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/dbsources/PfamSeed.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (760/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/dbsources/Rfam.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (761/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/dbsources/RfamFull.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (762/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/dbsources/RfamSeed.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (763/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/dbsources/Uniprot.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (764/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/dbsources/UniprotName.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (765/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/dbsources/Xfam.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (766/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/ebi/EBIFetchClient.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (767/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/io/mime/HttpContentHandler.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (768/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/io/mime/JalviewMimeContentHandler.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (769/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/io/mime/MimeTypes.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (770/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws1/Annotate3D.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (771/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws1/Discoverer.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (772/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws1/JPredClient.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (773/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws1/JPredThread.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (774/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws1/JWS1Thread.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (775/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws1/MsaWSClient.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (776/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws1/MsaWSThread.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (777/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws1/SeqSearchWSClient.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (778/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws1/SeqSearchWSThread.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (779/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws1/WS1Client.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (780/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws1/WSJob.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (781/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/AAConClient.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (782/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/AADisorderClient.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (783/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/AWS2Thread.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (784/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/AbstractJabaCalcWorker.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (785/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/JWs2Job.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (786/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/JabaParamStore.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (787/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/JabaPreset.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (788/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/JabaWsServerQuery.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (789/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/JabawsCalcWorker.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (790/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/JabawsMsaInterfaceAlignCalcWorker.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (791/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/Jws2Client.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (792/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/Jws2Discoverer.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (793/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/MsaWSClient.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (794/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/MsaWSThread.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (795/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/ParameterUtils.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (796/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/RNAalifoldClient.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (797/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/SequenceAnnotationWSClient.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (798/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/dm/AAConSettings.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (799/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/dm/JabaOption.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (800/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/dm/JabaParameter.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (801/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/dm/JabaValueConstrain.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (802/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/dm/JabaWsParamSet.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (803/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/jabaws2/Jws2Instance.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (804/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/jws2/jabaws2/Jws2InstanceFactory.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (805/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/params/ArgumentI.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (806/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/params/AutoCalcSetting.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (807/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/params/InvalidArgumentException.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (808/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/params/OptionI.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (809/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/params/ParamDatastoreI.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (810/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/params/ParamManager.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (811/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/params/ParameterI.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (812/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/params/ValueConstrainI.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (813/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/params/WsParamSetI.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (814/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/params/simple/BooleanOption.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (815/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/params/simple/IntegerParameter.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (816/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/params/simple/Option.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (817/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/params/simple/Parameter.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (818/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/params/simple/StringChoiceParameter.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (819/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/rest/AlignmentProcessor.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (820/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/rest/HttpResultSet.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (821/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/rest/InputType.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (822/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/rest/NoValidInputDataException.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (823/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/rest/RestClient.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (824/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/rest/RestJob.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (825/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/rest/RestJobThread.java build 08-Jun-2020 23:03:54 [exec] J2S transpiling (826/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/rest/RestServiceDescription.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (827/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/rest/params/Alignment.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (828/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/rest/params/AnnotationFile.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (829/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/rest/params/JobConstant.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (830/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/rest/params/SeqGroupIndexVector.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (831/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/rest/params/SeqIdVector.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (832/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/rest/params/SeqVector.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (833/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/rest/params/Tree.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (834/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/seqfetcher/ASequenceFetcher.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (835/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/seqfetcher/DbSourceProxy.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (836/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/seqfetcher/DbSourceProxyImpl.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (837/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/seqfetcher/DbSourceProxyRoot.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (838/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/sifts/MappingOutputPojo.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (839/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/sifts/SiftsClient.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (840/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/sifts/SiftsException.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (841/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/sifts/SiftsSettings.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (842/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/uimodel/AlignAnalysisUIText.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (843/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/ws/utils/UrlDownloadClient.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (844/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/embl/EntrySetType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (845/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/embl/EntryType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (846/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/embl/ObjectFactory.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (847/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/embl/ROOT.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (848/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/embl/XrefType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (849/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/AlcodonFrame.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (850/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/Annotation.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (851/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/AnnotationColourScheme.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (852/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/AnnotationElement.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (853/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/DoubleMatrix.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (854/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/DoubleVector.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (855/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/Feature.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (856/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/FeatureMatcher.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (857/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/FeatureMatcherSet.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (858/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/FilterBy.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (859/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/JalviewModel.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (860/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/JalviewUserColours.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (861/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/MapListType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (862/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/Mapping.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (863/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/NoValueColour.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (864/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/ObjectFactory.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (865/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/PcaDataType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (866/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/Pdbentry.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (867/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/Sequence.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (868/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/SequenceSet.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (869/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/SequenceType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (870/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/ThresholdType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (871/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/VAMSAS.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (872/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/WebServiceParameterSet.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (873/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/jalview/package-info.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (874/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/sifts/Alignment.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (875/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/sifts/EntityType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (876/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/sifts/Entry.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (877/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/sifts/ObjectFactory.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (878/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/sifts/package-info.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (879/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/CitationType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (880/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/CofactorType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (881/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/CommentType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (882/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/ConsortiumType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (883/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/DbReferenceType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (884/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/Entry.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (885/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/EventType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (886/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/EvidenceType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (887/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/EvidencedStringType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (888/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/FeatureType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (889/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/GeneLocationType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (890/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/GeneNameType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (891/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/GeneType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (892/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/ImportedFromType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (893/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/InteractantType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (894/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/IsoformType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (895/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/KeywordType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (896/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/LocationType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (897/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/MoleculeType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (898/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/NameListType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (899/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/ObjectFactory.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (900/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/OrganismNameType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (901/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/OrganismType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (902/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/PersonType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (903/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/PhysiologicalReactionType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (904/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/PositionType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (905/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/PropertyType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (906/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/ProteinExistenceType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (907/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/ProteinType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (908/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/ReactionType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (909/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/ReferenceType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (910/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/SequenceType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (911/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/SourceDataType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (912/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/SourceType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (913/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/StatusType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (914/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/SubcellularLocationType.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (915/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/Uniprot.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (916/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/jalview/xml/binding/uniprot/package-info.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (917/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/javajs/async/Assets.java build 08-Jun-2020 23:03:55 [exec] j2s copying resources from /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/javajs to /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site/swingjs/j2s/javajs build 08-Jun-2020 23:03:55 [exec] J2S transpiling (918/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/javajs/async/Async.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (919/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/javajs/async/AsyncColorChooser.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (920/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/javajs/async/AsyncDialog.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (921/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/javajs/async/AsyncFileChooser.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (922/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/javajs/async/AsyncSwingWorker.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (923/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/javajs/async/SwingJSUtils.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (924/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/mc_view/AppletPDBCanvas.java build 08-Jun-2020 23:03:55 [exec] j2s copying resources from /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/mc_view to /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site/swingjs/j2s/mc_view build 08-Jun-2020 23:03:55 [exec] J2S transpiling (925/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/mc_view/AppletPDBViewer.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (926/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/mc_view/Atom.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (927/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/mc_view/Bond.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (928/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/mc_view/MCMatrix.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (929/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/mc_view/PDBCanvas.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (930/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/mc_view/PDBChain.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (931/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/mc_view/PDBfile.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (932/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/mc_view/Residue.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (933/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/mc_view/Zsort.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (934/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/org/jibble/epsgraphics/EpsDocument.java build 08-Jun-2020 23:03:55 [exec] j2s copying resources from /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/org to /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site/swingjs/j2s/org build 08-Jun-2020 23:03:55 [exec] J2S transpiling (935/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/org/jibble/epsgraphics/EpsException.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (936/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/org/jibble/epsgraphics/EpsGraphics2D.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (937/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/org/stackoverflowusers/file/WindowsShortcut.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (938/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/swingjs/api/Interface.java build 08-Jun-2020 23:03:55 [exec] j2s copying resources from /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/swingjs to /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site/swingjs/j2s/swingjs build 08-Jun-2020 23:03:55 [exec] J2S transpiling (939/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/swingjs/api/JSFileHandler.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (940/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/swingjs/api/JSUtilI.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (941/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/swingjs/api/js/DOMNode.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (942/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/swingjs/api/js/HTML5Applet.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (943/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/swingjs/api/js/HTML5AudioContext.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (944/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/swingjs/api/js/HTML5Canvas.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (945/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/swingjs/api/js/HTML5CanvasContext2D.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (946/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/swingjs/api/js/HTML5DataTransfer.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (947/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/swingjs/api/js/HTML5Video.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (948/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/swingjs/api/js/J2SInterface.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (949/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/swingjs/api/js/JQuery.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (950/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/swingjs/api/js/JQueryObject.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (951/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/swingjs/api/js/JSFunction.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (952/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/swingjs/api/js/JSInterface.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (953/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/uk/ac/ebi/picr/model/CrossReference.java build 08-Jun-2020 23:03:55 [exec] j2s copying resources from /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/uk to /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site/swingjs/j2s/uk build 08-Jun-2020 23:03:55 [exec] J2S transpiling (954/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/uk/ac/ebi/picr/model/CrossReference_Helper.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (955/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/uk/ac/ebi/picr/model/UPEntry.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (956/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/uk/ac/ebi/picr/model/UPEntry_Helper.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (957/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/uk/ac/ebi/www/Data.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (958/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/uk/ac/ebi/www/InputParams.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (959/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/uk/ac/ebi/www/WSFile.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (960/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/uk/ac/ebi/www/WSWUBlast.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (961/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/uk/ac/ebi/www/WSWUBlastService.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (962/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/uk/ac/ebi/www/WSWUBlastServiceLocator.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (963/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/uk/ac/ebi/www/WSWUBlastSoapBindingStub.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (964/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (965/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperInterface.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (966/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperService.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (967/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperServiceLocator.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (968/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/IMsaWS.java build 08-Jun-2020 23:03:55 [exec] j2s copying resources from /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas to /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/site/swingjs/j2s/vamsas build 08-Jun-2020 23:03:55 [exec] J2S transpiling (969/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/Alignment.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (970/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/Alignment_Helper.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (971/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/JpredResult.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (972/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/JpredResult_Helper.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (973/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/MsaResult.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (974/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/MsaResult_Helper.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (975/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/Msfalignment.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (976/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/Msfalignment_Helper.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (977/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/Object.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (978/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/Object_Helper.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (979/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/Result.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (980/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/Result_Helper.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (981/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/Secstructpred.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (982/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/Secstructpred_Helper.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (983/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/SeqSearchResult.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (984/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/SeqSearchResult_Helper.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (985/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/Sequence.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (986/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/SequenceSet.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (987/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/SequenceSet_Helper.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (988/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/Sequence_Helper.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (989/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/WsJobId.java build 08-Jun-2020 23:03:55 [exec] J2S transpiling (990/990) /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js/src/vamsas/objects/simple/WsJobId_Helper.java build 08-Jun-2020 23:03:55 [exec] J2S processed 990 .java files, created 1021 .js files and 6 .html files, copied 10 resources build 08-Jun-2020 23:03:55 [exec] J2S buildFinished 990 files transpiled for /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js build 08-Jun-2020 23:03:55 [exec] J2S buildFinished nerror = 0 Mon Jun 08 23:03:55 BST 2020 build 08-Jun-2020 23:03:55 [exec] (Found 2000 warnings) Build done build 08-Jun-2020 23:03:55 [exec] Invoking 'Faceted Project Validation Builder' on '/jalview-js'. build 08-Jun-2020 23:03:55 [exec] Validating faceted project... build 08-Jun-2020 23:03:56 [exec] Invoking 'Integrated External Tool Builder' on '/jalview-js'. build 08-Jun-2020 23:03:56 [exec] Running Jalview Release indices [Builder]... build 08-Jun-2020 23:03:56 [exec] Preparing launch delegate... build 08-Jun-2020 23:03:56 [exec] Performing pre-launch check... build 08-Jun-2020 23:03:56 [exec] Performing final launch validation... build 08-Jun-2020 23:03:56 [exec] Initializing source locator... build 08-Jun-2020 23:03:56 [exec] Launching delegate... build 08-Jun-2020 23:03:57 [exec] Eclipse: build 08-Jun-2020 23:03:57 [exec] An error has occurred. See the log file build 08-Jun-2020 23:03:57 [exec] /srv/bamboo/home/bamboo/buildtools/eclipse/eclipse-js-workspace/.metadata/.log. build 08-Jun-2020 23:03:57 [exec] Result: 13 build 08-Jun-2020 23:03:57 [exec] !SESSION 2020-06-08 23:02:21.959 ----------------------------------------------- build 08-Jun-2020 23:03:57 [exec] eclipse.buildId=4.8.0.I20180611-0500 build 08-Jun-2020 23:03:57 [exec] java.version=1.8.0_252 build 08-Jun-2020 23:03:57 [exec] java.vendor=Oracle Corporation build 08-Jun-2020 23:03:57 [exec] BootLoader constants: OS=linux, ARCH=x86_64, WS=gtk, NL=en_GB build 08-Jun-2020 23:03:57 [exec] Framework arguments: -product org.eclipse.epp.package.jee.product -application org.eclipse.jdt.apt.core.aptBuild build 08-Jun-2020 23:03:57 [exec] Command-line arguments: -os linux -ws gtk -arch x86_64 -product org.eclipse.epp.package.jee.product -clean -application org.eclipse.jdt.apt.core.aptBuild -data /home/bamboo/buildtools/eclipse/eclipse-js-workspace build 08-Jun-2020 23:03:57 [exec] build 08-Jun-2020 23:03:57 [exec] !ENTRY org.eclipse.core.resources 2 10035 2020-06-08 23:02:47.294 build 08-Jun-2020 23:03:57 [exec] !MESSAGE The workspace exited with unsaved changes in the previous session; refreshing workspace to recover changes. build 08-Jun-2020 23:03:57 [exec] build 08-Jun-2020 23:03:57 [exec] !ENTRY org.eclipse.egit.core 2 0 2020-06-08 23:03:04.451 build 08-Jun-2020 23:03:57 [exec] !MESSAGE Builtin LFS support not present/detected build 08-Jun-2020 23:03:57 [exec] !STACK 0 build 08-Jun-2020 23:03:57 [exec] java.lang.ClassNotFoundException: org.eclipse.jgit.lfs.BuiltinLFS cannot be found by org.eclipse.egit.core_5.0.0.201806131550-r build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:508) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:419) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:411) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:150) build 08-Jun-2020 23:03:57 [exec] at java.lang.ClassLoader.loadClass(ClassLoader.java:351) build 08-Jun-2020 23:03:57 [exec] at java.lang.Class.forName0(Native Method) build 08-Jun-2020 23:03:57 [exec] at java.lang.Class.forName(Class.java:264) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.egit.core.Activator.registerBuiltinLFS(Activator.java:279) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.egit.core.Activator.start(Activator.java:212) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:779) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:1) build 08-Jun-2020 23:03:57 [exec] at java.security.AccessController.doPrivileged(Native Method) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.startActivator(BundleContextImpl.java:772) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.start(BundleContextImpl.java:729) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle.startWorker0(EquinoxBundle.java:1002) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle$EquinoxModule.startWorker(EquinoxBundle.java:354) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.container.Module.doStart(Module.java:581) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.container.Module.start(Module.java:449) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.framework.util.SecureAction.start(SecureAction.java:468) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.hooks.EclipseLazyStarter.postFindLocalClass(EclipseLazyStarter.java:114) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClass(ClasspathManager.java:505) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.findLocalClass(ModuleClassLoader.java:328) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findLocalClass(BundleLoader.java:392) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:470) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:419) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:411) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:150) build 08-Jun-2020 23:03:57 [exec] at java.lang.ClassLoader.loadClass(ClassLoader.java:351) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle.loadClass(EquinoxBundle.java:609) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.osgi.RegistryStrategyOSGI.createExecutableExtension(RegistryStrategyOSGI.java:177) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.ExtensionRegistry.createExecutableExtension(ExtensionRegistry.java:931) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.ConfigurationElement.createExecutableExtension(ConfigurationElement.java:243) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.ConfigurationElementHandle.createExecutableExtension(ConfigurationElementHandle.java:60) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.team.core.RepositoryProvider.newProvider(RepositoryProvider.java:707) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.team.core.RepositoryProvider.mapNewProvider(RepositoryProvider.java:162) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.team.core.RepositoryProvider.mapExistingProvider(RepositoryProvider.java:233) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.team.core.RepositoryProvider.getProvider(RepositoryProvider.java:510) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.team.internal.core.TeamHookDispatcher.getProvider(TeamHookDispatcher.java:89) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.team.internal.core.TeamHookDispatcher.getRuleFactory(TeamHookDispatcher.java:95) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.resources.Rules.factoryFor(Rules.java:98) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.resources.Rules.refreshRule(Rules.java:175) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.resources.Resource.refreshLocal(Resource.java:1537) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.refresh.RefreshJob.runInWorkspace(RefreshJob.java:163) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.resources.InternalWorkspaceJob.run(InternalWorkspaceJob.java:39) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.jobs.Worker.run(Worker.java:60) build 08-Jun-2020 23:03:57 [exec] build 08-Jun-2020 23:03:57 [exec] !ENTRY org.eclipse.jdt.core 4 4 2020-06-08 23:03:04.994 build 08-Jun-2020 23:03:57 [exec] !MESSAGE Unable to read variable and containers file build 08-Jun-2020 23:03:57 [exec] !STACK 0 build 08-Jun-2020 23:03:57 [exec] java.io.EOFException build 08-Jun-2020 23:03:57 [exec] at java.io.DataInputStream.readInt(DataInputStream.java:392) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.jdt.internal.core.JavaModelManager$VariablesAndContainersLoadHelper.loadInt(JavaModelManager.java:3956) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.jdt.internal.core.JavaModelManager$VariablesAndContainersLoadHelper.loadVariables(JavaModelManager.java:4022) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.jdt.internal.core.JavaModelManager$VariablesAndContainersLoadHelper.load(JavaModelManager.java:3825) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.jdt.internal.core.JavaModelManager.loadVariablesAndContainers(JavaModelManager.java:3656) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.jdt.internal.core.JavaModelManager.startup(JavaModelManager.java:5391) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.jdt.core.JavaCore.start(JavaCore.java:6222) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:779) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:1) build 08-Jun-2020 23:03:57 [exec] at java.security.AccessController.doPrivileged(Native Method) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.startActivator(BundleContextImpl.java:772) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.start(BundleContextImpl.java:729) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle.startWorker0(EquinoxBundle.java:1002) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle$EquinoxModule.startWorker(EquinoxBundle.java:354) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.container.Module.doStart(Module.java:581) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.container.Module.start(Module.java:449) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.framework.util.SecureAction.start(SecureAction.java:468) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.hooks.EclipseLazyStarter.postFindLocalClass(EclipseLazyStarter.java:114) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClass(ClasspathManager.java:505) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.findLocalClass(ModuleClassLoader.java:328) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findLocalClass(BundleLoader.java:392) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.sources.SingleSourcePackage.loadClass(SingleSourcePackage.java:36) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:466) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:419) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:411) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:150) build 08-Jun-2020 23:03:57 [exec] at java.lang.ClassLoader.loadClass(ClassLoader.java:351) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.jdt.apt.core.internal.AptPlugin.start(AptPlugin.java:108) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:779) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:1) build 08-Jun-2020 23:03:57 [exec] at java.security.AccessController.doPrivileged(Native Method) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.startActivator(BundleContextImpl.java:772) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.start(BundleContextImpl.java:729) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle.startWorker0(EquinoxBundle.java:1002) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle$EquinoxModule.startWorker(EquinoxBundle.java:354) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.container.Module.doStart(Module.java:581) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.container.Module.start(Module.java:449) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.framework.util.SecureAction.start(SecureAction.java:468) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.hooks.EclipseLazyStarter.postFindLocalClass(EclipseLazyStarter.java:114) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClass(ClasspathManager.java:505) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.findLocalClass(ModuleClassLoader.java:328) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findLocalClass(BundleLoader.java:392) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:470) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:419) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:411) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:150) build 08-Jun-2020 23:03:57 [exec] at java.lang.ClassLoader.loadClass(ClassLoader.java:351) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle.loadClass(EquinoxBundle.java:609) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.osgi.RegistryStrategyOSGI.createExecutableExtension(RegistryStrategyOSGI.java:177) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.ExtensionRegistry.createExecutableExtension(ExtensionRegistry.java:931) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.ConfigurationElement.createExecutableExtension(ConfigurationElement.java:243) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.ConfigurationElementHandle.createExecutableExtension(ConfigurationElementHandle.java:60) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:191) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243) build 08-Jun-2020 23:03:57 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) build 08-Jun-2020 23:03:57 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) build 08-Jun-2020 23:03:57 [exec] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) build 08-Jun-2020 23:03:57 [exec] at java.lang.reflect.Method.invoke(Method.java:498) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:656) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.launcher.Main.basicRun(Main.java:592) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.launcher.Main.run(Main.java:1498) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.launcher.Main.main(Main.java:1471) build 08-Jun-2020 23:03:57 [exec] build 08-Jun-2020 23:03:57 [exec] !ENTRY org.eclipse.osgi 4 0 2020-06-08 23:03:56.406 build 08-Jun-2020 23:03:57 [exec] !MESSAGE An error occurred while automatically activating bundle org.eclipse.ui.externaltools (786). build 08-Jun-2020 23:03:57 [exec] !STACK 0 build 08-Jun-2020 23:03:57 [exec] org.osgi.framework.BundleException: Exception in org.eclipse.ui.externaltools.internal.model.ExternalToolsPlugin.start() of bundle org.eclipse.ui.externaltools. build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.startActivator(BundleContextImpl.java:800) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.start(BundleContextImpl.java:729) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle.startWorker0(EquinoxBundle.java:1002) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle$EquinoxModule.startWorker(EquinoxBundle.java:354) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.container.Module.doStart(Module.java:581) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.container.Module.start(Module.java:449) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.framework.util.SecureAction.start(SecureAction.java:468) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.hooks.EclipseLazyStarter.postFindLocalClass(EclipseLazyStarter.java:114) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClass(ClasspathManager.java:505) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.findLocalClass(ModuleClassLoader.java:328) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findLocalClass(BundleLoader.java:392) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:470) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:419) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:411) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:150) build 08-Jun-2020 23:03:57 [exec] at java.lang.ClassLoader.loadClass(ClassLoader.java:351) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle.loadClass(EquinoxBundle.java:609) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.osgi.RegistryStrategyOSGI.createExecutableExtension(RegistryStrategyOSGI.java:177) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.ExtensionRegistry.createExecutableExtension(ExtensionRegistry.java:931) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.ConfigurationElement.createExecutableExtension(ConfigurationElement.java:243) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.ConfigurationElementHandle.createExecutableExtension(ConfigurationElementHandle.java:60) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.DynamicVariable.getValue(DynamicVariable.java:48) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.resolve(StringSubstitutionEngine.java:269) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.substitute(StringSubstitutionEngine.java:192) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.performStringSubstitution(StringSubstitutionEngine.java:87) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.StringVariableManager.performStringSubstitution(StringVariableManager.java:592) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.StringVariableManager.performStringSubstitution(StringVariableManager.java:358) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.externaltools.internal.launchConfigurations.ExternalToolsCoreUtil.getLocation(ExternalToolsCoreUtil.java:73) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.ant.internal.launching.launchConfigurations.AntLaunchDelegate.launch(AntLaunchDelegate.java:161) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:859) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:717) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:712) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.launchBuild(ExternalToolBuilder.java:183) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.doBuildBasedOnScope(ExternalToolBuilder.java:171) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.build(ExternalToolBuilder.java:90) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager$2.run(BuildManager.java:795) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:216) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:259) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager$1.run(BuildManager.java:312) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:315) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuildLoop(BuildManager.java:367) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager.build(BuildManager.java:388) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.resources.Workspace.buildInternal(Workspace.java:501) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.resources.Workspace.build(Workspace.java:401) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.jdt.apt.core.build.AptBuilder.start(AptBuilder.java:56) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243) build 08-Jun-2020 23:03:57 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) build 08-Jun-2020 23:03:57 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) build 08-Jun-2020 23:03:57 [exec] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) build 08-Jun-2020 23:03:57 [exec] at java.lang.reflect.Method.invoke(Method.java:498) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:656) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.launcher.Main.basicRun(Main.java:592) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.launcher.Main.run(Main.java:1498) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.launcher.Main.main(Main.java:1471) build 08-Jun-2020 23:03:57 [exec] Caused by: java.lang.IllegalStateException: Workbench has not been created yet. build 08-Jun-2020 23:03:57 [exec] at org.eclipse.ui.PlatformUI.getWorkbench(PlatformUI.java:93) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.ui.externaltools.internal.model.ExternalToolsPlugin.start(ExternalToolsPlugin.java:254) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:779) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:1) build 08-Jun-2020 23:03:57 [exec] at java.security.AccessController.doPrivileged(Native Method) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.startActivator(BundleContextImpl.java:772) build 08-Jun-2020 23:03:57 [exec] ... 59 more build 08-Jun-2020 23:03:57 [exec] Root exception: build 08-Jun-2020 23:03:57 [exec] java.lang.IllegalStateException: Workbench has not been created yet. build 08-Jun-2020 23:03:57 [exec] at org.eclipse.ui.PlatformUI.getWorkbench(PlatformUI.java:93) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.ui.externaltools.internal.model.ExternalToolsPlugin.start(ExternalToolsPlugin.java:254) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:779) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:1) build 08-Jun-2020 23:03:57 [exec] at java.security.AccessController.doPrivileged(Native Method) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.startActivator(BundleContextImpl.java:772) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.start(BundleContextImpl.java:729) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle.startWorker0(EquinoxBundle.java:1002) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle$EquinoxModule.startWorker(EquinoxBundle.java:354) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.container.Module.doStart(Module.java:581) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.container.Module.start(Module.java:449) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.framework.util.SecureAction.start(SecureAction.java:468) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.hooks.EclipseLazyStarter.postFindLocalClass(EclipseLazyStarter.java:114) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClass(ClasspathManager.java:505) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.findLocalClass(ModuleClassLoader.java:328) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findLocalClass(BundleLoader.java:392) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:470) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:419) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:411) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:150) build 08-Jun-2020 23:03:57 [exec] at java.lang.ClassLoader.loadClass(ClassLoader.java:351) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle.loadClass(EquinoxBundle.java:609) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.osgi.RegistryStrategyOSGI.createExecutableExtension(RegistryStrategyOSGI.java:177) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.ExtensionRegistry.createExecutableExtension(ExtensionRegistry.java:931) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.ConfigurationElement.createExecutableExtension(ConfigurationElement.java:243) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.ConfigurationElementHandle.createExecutableExtension(ConfigurationElementHandle.java:60) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.DynamicVariable.getValue(DynamicVariable.java:48) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.resolve(StringSubstitutionEngine.java:269) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.substitute(StringSubstitutionEngine.java:192) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.performStringSubstitution(StringSubstitutionEngine.java:87) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.StringVariableManager.performStringSubstitution(StringVariableManager.java:592) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.StringVariableManager.performStringSubstitution(StringVariableManager.java:358) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.externaltools.internal.launchConfigurations.ExternalToolsCoreUtil.getLocation(ExternalToolsCoreUtil.java:73) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.ant.internal.launching.launchConfigurations.AntLaunchDelegate.launch(AntLaunchDelegate.java:161) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:859) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:717) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:712) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.launchBuild(ExternalToolBuilder.java:183) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.doBuildBasedOnScope(ExternalToolBuilder.java:171) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.build(ExternalToolBuilder.java:90) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager$2.run(BuildManager.java:795) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:216) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:259) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager$1.run(BuildManager.java:312) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:315) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuildLoop(BuildManager.java:367) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager.build(BuildManager.java:388) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.resources.Workspace.buildInternal(Workspace.java:501) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.resources.Workspace.build(Workspace.java:401) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.jdt.apt.core.build.AptBuilder.start(AptBuilder.java:56) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243) build 08-Jun-2020 23:03:57 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) build 08-Jun-2020 23:03:57 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) build 08-Jun-2020 23:03:57 [exec] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) build 08-Jun-2020 23:03:57 [exec] at java.lang.reflect.Method.invoke(Method.java:498) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:656) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.launcher.Main.basicRun(Main.java:592) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.launcher.Main.run(Main.java:1498) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.launcher.Main.main(Main.java:1471) build 08-Jun-2020 23:03:57 [exec] build 08-Jun-2020 23:03:57 [exec] !ENTRY org.eclipse.core.resources 4 2 2020-06-08 23:03:56.409 build 08-Jun-2020 23:03:57 [exec] !MESSAGE Problems occurred when invoking code from plug-in: "org.eclipse.core.resources". build 08-Jun-2020 23:03:57 [exec] !STACK 1 build 08-Jun-2020 23:03:57 [exec] org.eclipse.core.runtime.CoreException: Plug-in org.eclipse.ui.externaltools was unable to load class org.eclipse.ui.externaltools.internal.variables.BuildProjectResolver. build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.osgi.RegistryStrategyOSGI.throwException(RegistryStrategyOSGI.java:197) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.osgi.RegistryStrategyOSGI.createExecutableExtension(RegistryStrategyOSGI.java:179) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.ExtensionRegistry.createExecutableExtension(ExtensionRegistry.java:931) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.ConfigurationElement.createExecutableExtension(ConfigurationElement.java:243) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.ConfigurationElementHandle.createExecutableExtension(ConfigurationElementHandle.java:60) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.DynamicVariable.getValue(DynamicVariable.java:48) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.resolve(StringSubstitutionEngine.java:269) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.substitute(StringSubstitutionEngine.java:192) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.performStringSubstitution(StringSubstitutionEngine.java:87) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.StringVariableManager.performStringSubstitution(StringVariableManager.java:592) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.StringVariableManager.performStringSubstitution(StringVariableManager.java:358) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.externaltools.internal.launchConfigurations.ExternalToolsCoreUtil.getLocation(ExternalToolsCoreUtil.java:73) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.ant.internal.launching.launchConfigurations.AntLaunchDelegate.launch(AntLaunchDelegate.java:161) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:859) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:717) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:712) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.launchBuild(ExternalToolBuilder.java:183) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.doBuildBasedOnScope(ExternalToolBuilder.java:171) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.build(ExternalToolBuilder.java:90) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager$2.run(BuildManager.java:795) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:216) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:259) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager$1.run(BuildManager.java:312) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:315) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuildLoop(BuildManager.java:367) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager.build(BuildManager.java:388) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.resources.Workspace.buildInternal(Workspace.java:501) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.resources.Workspace.build(Workspace.java:401) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.jdt.apt.core.build.AptBuilder.start(AptBuilder.java:56) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243) build 08-Jun-2020 23:03:57 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) build 08-Jun-2020 23:03:57 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) build 08-Jun-2020 23:03:57 [exec] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) build 08-Jun-2020 23:03:57 [exec] at java.lang.reflect.Method.invoke(Method.java:498) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:656) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.launcher.Main.basicRun(Main.java:592) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.launcher.Main.run(Main.java:1498) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.launcher.Main.main(Main.java:1471) build 08-Jun-2020 23:03:57 [exec] Caused by: java.lang.ClassNotFoundException: An error occurred while automatically activating bundle org.eclipse.ui.externaltools (786). build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.hooks.EclipseLazyStarter.postFindLocalClass(EclipseLazyStarter.java:123) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClass(ClasspathManager.java:505) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.findLocalClass(ModuleClassLoader.java:328) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findLocalClass(BundleLoader.java:392) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:470) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:419) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:411) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:150) build 08-Jun-2020 23:03:57 [exec] at java.lang.ClassLoader.loadClass(ClassLoader.java:351) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle.loadClass(EquinoxBundle.java:609) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.osgi.RegistryStrategyOSGI.createExecutableExtension(RegistryStrategyOSGI.java:177) build 08-Jun-2020 23:03:57 [exec] ... 42 more build 08-Jun-2020 23:03:57 [exec] Caused by: org.osgi.framework.BundleException: Exception in org.eclipse.ui.externaltools.internal.model.ExternalToolsPlugin.start() of bundle org.eclipse.ui.externaltools. build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.startActivator(BundleContextImpl.java:800) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.start(BundleContextImpl.java:729) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle.startWorker0(EquinoxBundle.java:1002) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle$EquinoxModule.startWorker(EquinoxBundle.java:354) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.container.Module.doStart(Module.java:581) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.container.Module.start(Module.java:449) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.framework.util.SecureAction.start(SecureAction.java:468) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.hooks.EclipseLazyStarter.postFindLocalClass(EclipseLazyStarter.java:114) build 08-Jun-2020 23:03:57 [exec] ... 52 more build 08-Jun-2020 23:03:57 [exec] Caused by: java.lang.IllegalStateException: Workbench has not been created yet. build 08-Jun-2020 23:03:57 [exec] at org.eclipse.ui.PlatformUI.getWorkbench(PlatformUI.java:93) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.ui.externaltools.internal.model.ExternalToolsPlugin.start(ExternalToolsPlugin.java:254) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:779) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:1) build 08-Jun-2020 23:03:57 [exec] at java.security.AccessController.doPrivileged(Native Method) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.startActivator(BundleContextImpl.java:772) build 08-Jun-2020 23:03:57 [exec] ... 59 more build 08-Jun-2020 23:03:57 [exec] !SUBENTRY 1 org.eclipse.equinox.registry 4 1 2020-06-08 23:03:56.409 build 08-Jun-2020 23:03:57 [exec] !MESSAGE Plug-in org.eclipse.ui.externaltools was unable to load class org.eclipse.ui.externaltools.internal.variables.BuildProjectResolver. build 08-Jun-2020 23:03:57 [exec] !STACK 0 build 08-Jun-2020 23:03:57 [exec] java.lang.ClassNotFoundException: An error occurred while automatically activating bundle org.eclipse.ui.externaltools (786). build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.hooks.EclipseLazyStarter.postFindLocalClass(EclipseLazyStarter.java:123) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClass(ClasspathManager.java:505) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.findLocalClass(ModuleClassLoader.java:328) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findLocalClass(BundleLoader.java:392) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:470) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:419) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:411) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:150) build 08-Jun-2020 23:03:57 [exec] at java.lang.ClassLoader.loadClass(ClassLoader.java:351) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle.loadClass(EquinoxBundle.java:609) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.osgi.RegistryStrategyOSGI.createExecutableExtension(RegistryStrategyOSGI.java:177) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.ExtensionRegistry.createExecutableExtension(ExtensionRegistry.java:931) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.ConfigurationElement.createExecutableExtension(ConfigurationElement.java:243) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.ConfigurationElementHandle.createExecutableExtension(ConfigurationElementHandle.java:60) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.DynamicVariable.getValue(DynamicVariable.java:48) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.resolve(StringSubstitutionEngine.java:269) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.substitute(StringSubstitutionEngine.java:192) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.performStringSubstitution(StringSubstitutionEngine.java:87) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.StringVariableManager.performStringSubstitution(StringVariableManager.java:592) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.StringVariableManager.performStringSubstitution(StringVariableManager.java:358) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.externaltools.internal.launchConfigurations.ExternalToolsCoreUtil.getLocation(ExternalToolsCoreUtil.java:73) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.ant.internal.launching.launchConfigurations.AntLaunchDelegate.launch(AntLaunchDelegate.java:161) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:859) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:717) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:712) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.launchBuild(ExternalToolBuilder.java:183) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.doBuildBasedOnScope(ExternalToolBuilder.java:171) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.build(ExternalToolBuilder.java:90) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager$2.run(BuildManager.java:795) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:216) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:259) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager$1.run(BuildManager.java:312) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:315) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuildLoop(BuildManager.java:367) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager.build(BuildManager.java:388) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.resources.Workspace.buildInternal(Workspace.java:501) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.resources.Workspace.build(Workspace.java:401) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.jdt.apt.core.build.AptBuilder.start(AptBuilder.java:56) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243) build 08-Jun-2020 23:03:57 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) build 08-Jun-2020 23:03:57 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) build 08-Jun-2020 23:03:57 [exec] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) build 08-Jun-2020 23:03:57 [exec] at java.lang.reflect.Method.invoke(Method.java:498) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:656) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.launcher.Main.basicRun(Main.java:592) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.launcher.Main.run(Main.java:1498) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.launcher.Main.main(Main.java:1471) build 08-Jun-2020 23:03:57 [exec] Caused by: org.osgi.framework.BundleException: Exception in org.eclipse.ui.externaltools.internal.model.ExternalToolsPlugin.start() of bundle org.eclipse.ui.externaltools. build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.startActivator(BundleContextImpl.java:800) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.start(BundleContextImpl.java:729) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle.startWorker0(EquinoxBundle.java:1002) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle$EquinoxModule.startWorker(EquinoxBundle.java:354) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.container.Module.doStart(Module.java:581) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.container.Module.start(Module.java:449) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.framework.util.SecureAction.start(SecureAction.java:468) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.hooks.EclipseLazyStarter.postFindLocalClass(EclipseLazyStarter.java:114) build 08-Jun-2020 23:03:57 [exec] ... 52 more build 08-Jun-2020 23:03:57 [exec] Caused by: java.lang.IllegalStateException: Workbench has not been created yet. build 08-Jun-2020 23:03:57 [exec] at org.eclipse.ui.PlatformUI.getWorkbench(PlatformUI.java:93) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.ui.externaltools.internal.model.ExternalToolsPlugin.start(ExternalToolsPlugin.java:254) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:779) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:1) build 08-Jun-2020 23:03:57 [exec] at java.security.AccessController.doPrivileged(Native Method) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.startActivator(BundleContextImpl.java:772) build 08-Jun-2020 23:03:57 [exec] ... 59 more build 08-Jun-2020 23:03:57 [exec] !SUBENTRY 1 org.eclipse.equinox.registry 4 1 2020-06-08 23:03:56.409 build 08-Jun-2020 23:03:57 [exec] !MESSAGE Plug-in org.eclipse.ui.externaltools was unable to load class org.eclipse.ui.externaltools.internal.variables.BuildProjectResolver. build 08-Jun-2020 23:03:57 [exec] !STACK 0 build 08-Jun-2020 23:03:57 [exec] java.lang.ClassNotFoundException: An error occurred while automatically activating bundle org.eclipse.ui.externaltools (786). build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.hooks.EclipseLazyStarter.postFindLocalClass(EclipseLazyStarter.java:123) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClass(ClasspathManager.java:505) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.findLocalClass(ModuleClassLoader.java:328) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findLocalClass(BundleLoader.java:392) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:470) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:419) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:411) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:150) build 08-Jun-2020 23:03:57 [exec] at java.lang.ClassLoader.loadClass(ClassLoader.java:351) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle.loadClass(EquinoxBundle.java:609) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.osgi.RegistryStrategyOSGI.createExecutableExtension(RegistryStrategyOSGI.java:177) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.ExtensionRegistry.createExecutableExtension(ExtensionRegistry.java:931) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.ConfigurationElement.createExecutableExtension(ConfigurationElement.java:243) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.ConfigurationElementHandle.createExecutableExtension(ConfigurationElementHandle.java:60) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.DynamicVariable.getValue(DynamicVariable.java:48) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.resolve(StringSubstitutionEngine.java:269) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.substitute(StringSubstitutionEngine.java:192) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.performStringSubstitution(StringSubstitutionEngine.java:87) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.StringVariableManager.performStringSubstitution(StringVariableManager.java:592) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.StringVariableManager.performStringSubstitution(StringVariableManager.java:358) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.externaltools.internal.launchConfigurations.ExternalToolsCoreUtil.getLocation(ExternalToolsCoreUtil.java:73) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.ant.internal.launching.launchConfigurations.AntLaunchDelegate.launch(AntLaunchDelegate.java:161) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:859) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:717) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:712) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.launchBuild(ExternalToolBuilder.java:183) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.doBuildBasedOnScope(ExternalToolBuilder.java:171) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.build(ExternalToolBuilder.java:90) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager$2.run(BuildManager.java:795) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:216) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:259) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager$1.run(BuildManager.java:312) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:315) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuildLoop(BuildManager.java:367) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager.build(BuildManager.java:388) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.resources.Workspace.buildInternal(Workspace.java:501) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.resources.Workspace.build(Workspace.java:401) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.jdt.apt.core.build.AptBuilder.start(AptBuilder.java:56) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243) build 08-Jun-2020 23:03:57 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) build 08-Jun-2020 23:03:57 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) build 08-Jun-2020 23:03:57 [exec] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) build 08-Jun-2020 23:03:57 [exec] at java.lang.reflect.Method.invoke(Method.java:498) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:656) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.launcher.Main.basicRun(Main.java:592) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.launcher.Main.run(Main.java:1498) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.launcher.Main.main(Main.java:1471) build 08-Jun-2020 23:03:57 [exec] Caused by: org.osgi.framework.BundleException: Exception in org.eclipse.ui.externaltools.internal.model.ExternalToolsPlugin.start() of bundle org.eclipse.ui.externaltools. build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.startActivator(BundleContextImpl.java:800) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.start(BundleContextImpl.java:729) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle.startWorker0(EquinoxBundle.java:1002) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle$EquinoxModule.startWorker(EquinoxBundle.java:354) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.container.Module.doStart(Module.java:581) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.container.Module.start(Module.java:449) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.framework.util.SecureAction.start(SecureAction.java:468) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.hooks.EclipseLazyStarter.postFindLocalClass(EclipseLazyStarter.java:114) build 08-Jun-2020 23:03:57 [exec] ... 52 more build 08-Jun-2020 23:03:57 [exec] Caused by: java.lang.IllegalStateException: Workbench has not been created yet. build 08-Jun-2020 23:03:57 [exec] at org.eclipse.ui.PlatformUI.getWorkbench(PlatformUI.java:93) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.ui.externaltools.internal.model.ExternalToolsPlugin.start(ExternalToolsPlugin.java:254) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:779) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:1) build 08-Jun-2020 23:03:57 [exec] at java.security.AccessController.doPrivileged(Native Method) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.startActivator(BundleContextImpl.java:772) build 08-Jun-2020 23:03:57 [exec] ... 59 more build 08-Jun-2020 23:03:57 [exec] build 08-Jun-2020 23:03:57 [exec] !ENTRY org.eclipse.osgi 4 0 2020-06-08 23:03:56.428 build 08-Jun-2020 23:03:57 [exec] !MESSAGE Application error build 08-Jun-2020 23:03:57 [exec] !STACK 1 build 08-Jun-2020 23:03:57 [exec] org.eclipse.core.internal.resources.ResourceException: Errors occurred during the build. build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.resources.Workspace.buildInternal(Workspace.java:517) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.resources.Workspace.build(Workspace.java:401) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.jdt.apt.core.build.AptBuilder.start(AptBuilder.java:56) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243) build 08-Jun-2020 23:03:57 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) build 08-Jun-2020 23:03:57 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) build 08-Jun-2020 23:03:57 [exec] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) build 08-Jun-2020 23:03:57 [exec] at java.lang.reflect.Method.invoke(Method.java:498) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:656) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.launcher.Main.basicRun(Main.java:592) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.launcher.Main.run(Main.java:1498) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.launcher.Main.main(Main.java:1471) build 08-Jun-2020 23:03:57 [exec] Contains: Errors running builder 'Integrated External Tool Builder' on project 'jalview-js'. build 08-Jun-2020 23:03:57 [exec] org.eclipse.core.runtime.CoreException: Plug-in org.eclipse.ui.externaltools was unable to load class org.eclipse.ui.externaltools.internal.variables.BuildProjectResolver. build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.osgi.RegistryStrategyOSGI.throwException(RegistryStrategyOSGI.java:197) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.osgi.RegistryStrategyOSGI.createExecutableExtension(RegistryStrategyOSGI.java:179) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.ExtensionRegistry.createExecutableExtension(ExtensionRegistry.java:931) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.ConfigurationElement.createExecutableExtension(ConfigurationElement.java:243) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.ConfigurationElementHandle.createExecutableExtension(ConfigurationElementHandle.java:60) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.DynamicVariable.getValue(DynamicVariable.java:48) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.resolve(StringSubstitutionEngine.java:269) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.substitute(StringSubstitutionEngine.java:192) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.performStringSubstitution(StringSubstitutionEngine.java:87) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.StringVariableManager.performStringSubstitution(StringVariableManager.java:592) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.StringVariableManager.performStringSubstitution(StringVariableManager.java:358) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.externaltools.internal.launchConfigurations.ExternalToolsCoreUtil.getLocation(ExternalToolsCoreUtil.java:73) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.ant.internal.launching.launchConfigurations.AntLaunchDelegate.launch(AntLaunchDelegate.java:161) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:859) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:717) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:712) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.launchBuild(ExternalToolBuilder.java:183) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.doBuildBasedOnScope(ExternalToolBuilder.java:171) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.build(ExternalToolBuilder.java:90) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager$2.run(BuildManager.java:795) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:216) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:259) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager$1.run(BuildManager.java:312) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:315) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuildLoop(BuildManager.java:367) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager.build(BuildManager.java:388) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.resources.Workspace.buildInternal(Workspace.java:501) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.resources.Workspace.build(Workspace.java:401) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.jdt.apt.core.build.AptBuilder.start(AptBuilder.java:56) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243) build 08-Jun-2020 23:03:57 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) build 08-Jun-2020 23:03:57 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) build 08-Jun-2020 23:03:57 [exec] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) build 08-Jun-2020 23:03:57 [exec] at java.lang.reflect.Method.invoke(Method.java:498) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:656) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.launcher.Main.basicRun(Main.java:592) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.launcher.Main.run(Main.java:1498) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.launcher.Main.main(Main.java:1471) build 08-Jun-2020 23:03:57 [exec] Caused by: java.lang.ClassNotFoundException: An error occurred while automatically activating bundle org.eclipse.ui.externaltools (786). build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.hooks.EclipseLazyStarter.postFindLocalClass(EclipseLazyStarter.java:123) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClass(ClasspathManager.java:505) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.findLocalClass(ModuleClassLoader.java:328) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findLocalClass(BundleLoader.java:392) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:470) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:419) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:411) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:150) build 08-Jun-2020 23:03:57 [exec] at java.lang.ClassLoader.loadClass(ClassLoader.java:351) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle.loadClass(EquinoxBundle.java:609) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.osgi.RegistryStrategyOSGI.createExecutableExtension(RegistryStrategyOSGI.java:177) build 08-Jun-2020 23:03:57 [exec] ... 42 more build 08-Jun-2020 23:03:57 [exec] Caused by: org.osgi.framework.BundleException: Exception in org.eclipse.ui.externaltools.internal.model.ExternalToolsPlugin.start() of bundle org.eclipse.ui.externaltools. build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.startActivator(BundleContextImpl.java:800) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.start(BundleContextImpl.java:729) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle.startWorker0(EquinoxBundle.java:1002) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle$EquinoxModule.startWorker(EquinoxBundle.java:354) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.container.Module.doStart(Module.java:581) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.container.Module.start(Module.java:449) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.framework.util.SecureAction.start(SecureAction.java:468) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.hooks.EclipseLazyStarter.postFindLocalClass(EclipseLazyStarter.java:114) build 08-Jun-2020 23:03:57 [exec] ... 52 more build 08-Jun-2020 23:03:57 [exec] Caused by: java.lang.IllegalStateException: Workbench has not been created yet. build 08-Jun-2020 23:03:57 [exec] at org.eclipse.ui.PlatformUI.getWorkbench(PlatformUI.java:93) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.ui.externaltools.internal.model.ExternalToolsPlugin.start(ExternalToolsPlugin.java:254) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:779) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:1) build 08-Jun-2020 23:03:57 [exec] at java.security.AccessController.doPrivileged(Native Method) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.startActivator(BundleContextImpl.java:772) build 08-Jun-2020 23:03:57 [exec] ... 59 more build 08-Jun-2020 23:03:57 [exec] Contains: Plug-in org.eclipse.ui.externaltools was unable to load class org.eclipse.ui.externaltools.internal.variables.BuildProjectResolver. build 08-Jun-2020 23:03:57 [exec] java.lang.ClassNotFoundException: An error occurred while automatically activating bundle org.eclipse.ui.externaltools (786). build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.hooks.EclipseLazyStarter.postFindLocalClass(EclipseLazyStarter.java:123) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClass(ClasspathManager.java:505) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.findLocalClass(ModuleClassLoader.java:328) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findLocalClass(BundleLoader.java:392) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:470) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:419) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:411) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:150) build 08-Jun-2020 23:03:57 [exec] at java.lang.ClassLoader.loadClass(ClassLoader.java:351) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle.loadClass(EquinoxBundle.java:609) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.osgi.RegistryStrategyOSGI.createExecutableExtension(RegistryStrategyOSGI.java:177) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.ExtensionRegistry.createExecutableExtension(ExtensionRegistry.java:931) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.ConfigurationElement.createExecutableExtension(ConfigurationElement.java:243) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.registry.ConfigurationElementHandle.createExecutableExtension(ConfigurationElementHandle.java:60) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.DynamicVariable.getValue(DynamicVariable.java:48) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.resolve(StringSubstitutionEngine.java:269) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.substitute(StringSubstitutionEngine.java:192) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.StringSubstitutionEngine.performStringSubstitution(StringSubstitutionEngine.java:87) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.StringVariableManager.performStringSubstitution(StringVariableManager.java:592) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.variables.StringVariableManager.performStringSubstitution(StringVariableManager.java:358) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.externaltools.internal.launchConfigurations.ExternalToolsCoreUtil.getLocation(ExternalToolsCoreUtil.java:73) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.ant.internal.launching.launchConfigurations.AntLaunchDelegate.launch(AntLaunchDelegate.java:161) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:859) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:717) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.debug.internal.core.LaunchConfiguration.launch(LaunchConfiguration.java:712) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.launchBuild(ExternalToolBuilder.java:183) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.doBuildBasedOnScope(ExternalToolBuilder.java:171) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.externaltools.internal.model.ExternalToolBuilder.build(ExternalToolBuilder.java:90) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager$2.run(BuildManager.java:795) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:216) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:259) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager$1.run(BuildManager.java:312) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:315) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager.basicBuildLoop(BuildManager.java:367) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.events.BuildManager.build(BuildManager.java:388) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.resources.Workspace.buildInternal(Workspace.java:501) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.internal.resources.Workspace.build(Workspace.java:401) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.jdt.apt.core.build.AptBuilder.start(AptBuilder.java:56) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243) build 08-Jun-2020 23:03:57 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) build 08-Jun-2020 23:03:57 [exec] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) build 08-Jun-2020 23:03:57 [exec] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) build 08-Jun-2020 23:03:57 [exec] at java.lang.reflect.Method.invoke(Method.java:498) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:656) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.launcher.Main.basicRun(Main.java:592) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.launcher.Main.run(Main.java:1498) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.equinox.launcher.Main.main(Main.java:1471) build 08-Jun-2020 23:03:57 [exec] Caused by: org.osgi.framework.BundleException: Exception in org.eclipse.ui.externaltools.internal.model.ExternalToolsPlugin.start() of bundle org.eclipse.ui.externaltools. build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.startActivator(BundleContextImpl.java:800) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.start(BundleContextImpl.java:729) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle.startWorker0(EquinoxBundle.java:1002) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.EquinoxBundle$EquinoxModule.startWorker(EquinoxBundle.java:354) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.container.Module.doStart(Module.java:581) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.container.Module.start(Module.java:449) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.framework.util.SecureAction.start(SecureAction.java:468) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.hooks.EclipseLazyStarter.postFindLocalClass(EclipseLazyStarter.java:114) build 08-Jun-2020 23:03:57 [exec] ... 52 more build 08-Jun-2020 23:03:57 [exec] Caused by: java.lang.IllegalStateException: Workbench has not been created yet. build 08-Jun-2020 23:03:57 [exec] at org.eclipse.ui.PlatformUI.getWorkbench(PlatformUI.java:93) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.ui.externaltools.internal.model.ExternalToolsPlugin.start(ExternalToolsPlugin.java:254) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:779) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl$3.run(BundleContextImpl.java:1) build 08-Jun-2020 23:03:57 [exec] at java.security.AccessController.doPrivileged(Native Method) build 08-Jun-2020 23:03:57 [exec] at org.eclipse.osgi.internal.framework.BundleContextImpl.startActivator(BundleContextImpl.java:772) build 08-Jun-2020 23:03:57 [exec] ... 59 more build 08-Jun-2020 23:03:57 [exec] build 08-Jun-2020 23:03:57 [exec] !ENTRY org.eclipse.core.resources 2 10035 2020-06-08 23:03:57.206 build 08-Jun-2020 23:03:57 [exec] !MESSAGE The workspace will exit with unsaved changes in this session. build 08-Jun-2020 23:03:57 [copy] Copying 1028 files to /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JB3-JOB1/site build 08-Jun-2020 23:03:57 build 08-Jun-2020 23:03:57 unzip-to-site: build 08-Jun-2020 23:03:57 build 08-Jun-2020 23:03:57 tosite: build 08-Jun-2020 23:03:57 Trying to override old definition of task switch build 08-Jun-2020 23:03:57 [unzip] Expanding: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JB3-JOB1/libjs/MiGLayout-site.zip into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JB3-JOB1/site build 08-Jun-2020 23:03:58 [unzip] Expanding: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JB3-JOB1/libjs/VARNA-site.zip into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JB3-JOB1/site build 08-Jun-2020 23:03:58 [unzip] Expanding: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JB3-JOB1/libjs/intervalstore-site.zip into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JB3-JOB1/site build 08-Jun-2020 23:03:58 [unzip] Expanding: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JB3-JOB1/libjs/jmol-app.zip into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JB3-JOB1/site build 08-Jun-2020 23:03:58 [unzip] Expanding: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JB3-JOB1/swingjs/SwingJS-site.zip into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JB3-JOB1/site build 08-Jun-2020 23:03:58 [echo] Copying resources files into site/swingjs/j2s build 08-Jun-2020 23:03:58 [copy] Copying 30 files to /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JB3-JOB1/site/swingjs/j2s build 08-Jun-2020 23:03:58 [echo] Copying site-resources files into site build 08-Jun-2020 23:03:58 [copy] Copying 49 files to /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JB3-JOB1/site build 08-Jun-2020 23:03:58 build 08-Jun-2020 23:03:58 make-j2s-cores: build 08-Jun-2020 23:03:58 Trying to override old definition of task switch build 08-Jun-2020 23:03:58 build 08-Jun-2020 23:03:58 toJs: build 08-Jun-2020 23:03:59 build 08-Jun-2020 23:03:59 call-core: build 08-Jun-2020 23:03:59 [echo] ......Creating core_stevesoft.js build 08-Jun-2020 23:03:59 [echo] ......Generating site/swingjs/j2s/core/core_stevesoft.js build 08-Jun-2020 23:03:59 [echo] ......Generating site/swingjs/j2s/core/core_stevesoft.z.js build 08-Jun-2020 23:04:02 [java] core_stevesoft.js:3463: WARNING - unreachable code build 08-Jun-2020 23:04:02 [java] if (false) { build 08-Jun-2020 23:04:02 [java] ^ build 08-Jun-2020 23:04:02 [java] build 08-Jun-2020 23:04:02 [java] core_stevesoft.js:5491: WARNING - unreachable code build 08-Jun-2020 23:04:02 [java] if (false) { build 08-Jun-2020 23:04:02 [java] ^ build 08-Jun-2020 23:04:02 [java] build 08-Jun-2020 23:04:02 [java] core_stevesoft.js:7636: WARNING - unreachable code build 08-Jun-2020 23:04:02 [java] if (false) { build 08-Jun-2020 23:04:02 [java] ^ build 08-Jun-2020 23:04:02 [java] build 08-Jun-2020 23:04:02 [java] core_stevesoft.js:10811: WARNING - unreachable code build 08-Jun-2020 23:04:02 [java] if (false && this.thePattern == null ) { build 08-Jun-2020 23:04:02 [java] ^ build 08-Jun-2020 23:04:02 [java] build 08-Jun-2020 23:04:02 [java] 0 error(s), 4 warning(s) build 08-Jun-2020 23:04:02 [delete] Deleting: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JB3-JOB1/site/swingjs/js/core/tmp.js build 08-Jun-2020 23:04:02 build 08-Jun-2020 23:04:02 call-core: build 08-Jun-2020 23:04:02 [echo] ......Creating core_jvjmol.js build 08-Jun-2020 23:04:02 [echo] ......Generating site/swingjs/j2s/core/core_jvjmol.js build 08-Jun-2020 23:04:02 [echo] ......Generating site/swingjs/j2s/core/core_jvjmol.z.js build 08-Jun-2020 23:04:12 [java] core_jvjmol.js:577: WARNING - unreachable code build 08-Jun-2020 23:04:12 [java] if (false) { build 08-Jun-2020 23:04:12 [java] ^ build 08-Jun-2020 23:04:12 [java] build 08-Jun-2020 23:04:12 [java] core_jvjmol.js:9074: WARNING - unreachable code build 08-Jun-2020 23:04:12 [java] }}if (false) { build 08-Jun-2020 23:04:12 [java] ^ build 08-Jun-2020 23:04:12 [java] build 08-Jun-2020 23:04:12 [java] core_jvjmol.js:33380: WARNING - Suspicious code. The result of the 'getelem' operator is not being used. build 08-Jun-2020 23:04:12 [java] (($s$[0]=++this.lineCurrent,this.lineCurrent=$s$[0],$s$[0])); build 08-Jun-2020 23:04:12 [java] ^ build 08-Jun-2020 23:04:12 [java] build 08-Jun-2020 23:04:12 [java] core_jvjmol.js:69602: WARNING - unreachable code build 08-Jun-2020 23:04:12 [java] $I$(10).currentThread$().wait$J(100); build 08-Jun-2020 23:04:12 [java] ^ build 08-Jun-2020 23:04:12 [java] build 08-Jun-2020 23:04:12 [java] 0 error(s), 4 warning(s) build 08-Jun-2020 23:04:12 [delete] Deleting: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JB3-JOB1/site/swingjs/js/core/tmp.js build 08-Jun-2020 23:04:12 [echo] Building core file '_jalview' - warnings are OK; "does not exist" is trouble build 08-Jun-2020 23:04:12 [echo] Reading core class list from file _j2sclasslist.txt build 08-Jun-2020 23:04:12 build 08-Jun-2020 23:04:12 call-core: build 08-Jun-2020 23:04:12 [echo] ......Creating core_jalview.js build 08-Jun-2020 23:04:12 [concat] /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JB3-JOB1/site/swingjs/j2s/jalview/javascript/JalviewLiteJSApi.js does not exist. build 08-Jun-2020 23:04:12 [echo] ......Generating site/swingjs/j2s/core/core_jalview.js build 08-Jun-2020 23:04:12 [echo] ......Generating site/swingjs/j2s/core/core_jalview.z.js build 08-Jun-2020 23:04:37 [java] core_jalview.js:3388: WARNING - unreachable code build 08-Jun-2020 23:04:37 [java] if (mapFrom.getDatasetSequence$() != null && false ) { build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:6131: WARNING - unreachable code build 08-Jun-2020 23:04:37 [java] if (false) { build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:6216: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:04:37 [java] if (!isJS) build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:6257: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:04:37 [java] }if (!isJS) build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:6357: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:04:37 [java] } else if (!isJS) build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:10284: WARNING - unreachable code build 08-Jun-2020 23:04:37 [java] } else { build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:21621: WARNING - unreachable code build 08-Jun-2020 23:04:37 [java] if (false) { build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:21627: WARNING - unreachable code build 08-Jun-2020 23:04:37 [java] if (false) { build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:23530: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:04:37 [java] if (this.v_client != null ) { build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:34623: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:04:37 [java] if (maxWidth > 60) { build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:42239: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:04:37 [java] if (parmSet != null ) { build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:42534: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:04:37 [java] if (this.attemptversion1parse) { build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:53256: WARNING - unreachable code build 08-Jun-2020 23:04:37 [java] if (false) { build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:53262: WARNING - unreachable code build 08-Jun-2020 23:04:37 [java] }if (false) { build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:53276: WARNING - unreachable code build 08-Jun-2020 23:04:37 [java] if (false) { build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:53280: WARNING - unreachable code build 08-Jun-2020 23:04:37 [java] }if (false) { build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:56062: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:04:37 [java] if (this.featureGroups == null ) { build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:56096: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:04:37 [java] if (rdrw) { build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:57221: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:04:37 [java] if (this.ap != null ) { build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:62686: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:04:37 [java] if ((this.eventMask & 4096) != 0) { build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:67705: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:04:37 [java] /*sync org.eclipse.jdt.core.dom.ConditionalExpression*/((prev != null ) ? prev : this); build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:67705: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:04:37 [java] /*sync org.eclipse.jdt.core.dom.ConditionalExpression*/((prev != null ) ? prev : this); build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:67705: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:04:37 [java] /*sync org.eclipse.jdt.core.dom.ConditionalExpression*/((prev != null ) ? prev : this); build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:91042: WARNING - unreachable code build 08-Jun-2020 23:04:37 [java] if (b.isOneInt$()) return b.intValue$(); build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:93628: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] for (i=0; (b=p$1.getInt$I.apply(this, [i])) == 0; i++) ; build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:93964: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] for (keep=0; keep < vlen && val[keep] == 0 ; keep++) ; build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:93971: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] for (keep=0; keep < vlen && val[keep] == 0 ; keep++) ; build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:94031: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] for (keep=0; keep < a.length && a[keep] == -1 ; keep++) ; build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:94032: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] for (j=keep; j < a.length && a[j] == 0 ; j++) ; build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:94037: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] for (var i=result.length - 1; ++result[i] == 0; i--) ; build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:94062: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] for (i=mlen - 1; i >= 0 && this.mag[i] == 0 ; i--) ; build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:99046: WARNING - Suspicious code. The result of the 'getelem' operator is not being used. build 08-Jun-2020 23:04:37 [java] (($b$[0]=++groupingCount,groupingCount=$b$[0],$b$[0])); build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:99052: WARNING - Suspicious code. The result of the 'getelem' operator is not being used. build 08-Jun-2020 23:04:37 [java] (($b$[0]=++groupingCount,groupingCount=$b$[0],$b$[0])); build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:99066: WARNING - Suspicious code. The result of the 'getelem' operator is not being used. build 08-Jun-2020 23:04:37 [java] (($b$[0]=++this.minExponentDigits,this.minExponentDigits=$b$[0],$b$[0])); build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:99719: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] for (right=len - 1; right >= 0 && this.digits[right] == "0" ; --right) ; build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:101669: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] while (this.poll$() != null ); build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:110745: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] while (++k <= right && a[k - 1] <= a[k] ); build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:110747: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] while (++k <= right && a[k - 1] >= a[k] ); build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:110768: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] for (var n=1; (n<<=1) < count; odd=($b$[0] = odd^(1), $b$[0])) ; build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:110799: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] for (var i=right, lo=run[count - 1]; --i >= lo; b[i + bo]=a[i + ao]) ; build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:110896: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] while (a[++less] < pivot1); build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:110897: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] while (a[--great] > pivot2); build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:110988: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] while (++k <= right && a[k - 1] <= a[k] ); build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:110990: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] while (++k <= right && a[k - 1] >= a[k] ); build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:111011: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] for (var n=1; (n<<=1) < count; odd=($b$[0] = odd^(1), $b$[0])) ; build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:111042: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] for (var i=right, lo=run[count - 1]; --i >= lo; b[i + bo]=a[i + ao]) ; build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:111139: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] while (a[++less] < pivot1); build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:111140: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] while (a[--great] > pivot2); build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:111225: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] for (var i=left - 1; ++i <= right; count[a[i] - -32768]++) ; build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:111227: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] while (count[--i] == 0); build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:111247: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] while (++k <= right && a[k - 1] <= a[k] ); build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:111249: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] while (++k <= right && a[k - 1] >= a[k] ); build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:111270: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] for (var n=1; (n<<=1) < count; odd=($b$[0] = odd^(1), $b$[0])) ; build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:111301: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] for (var i=right, lo=run[count - 1]; --i >= lo; b[i + bo]=a[i + ao]) ; build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:111398: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] while (a[++less] < pivot1); build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:111399: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] while (a[--great] > pivot2); build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:111484: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] for (var i=left - 1; ++i <= right; count[(a[i]).$c()]++) ; build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:111486: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] while (count[--i] == 0); build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:111506: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] while (++k <= right && a[k - 1] <= a[k] ); build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:111508: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] while (++k <= right && a[k - 1] >= a[k] ); build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:111529: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] for (var n=1; (n<<=1) < count; odd=($b$[0] = odd^(1), $b$[0])) ; build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:111560: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] for (var i=right, lo=run[count - 1]; --i >= lo; b[i + bo]=a[i + ao]) ; build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:111657: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] while (a[++less] < pivot1); build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:111658: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] while (a[--great] > pivot2); build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:111743: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] for (var i=left - 1; ++i <= right; count[a[i] - -128]++) ; build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:111745: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] while (count[--i] == 0); build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:111807: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] while (++k <= right && a[k - 1] <= a[k] ); build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:111809: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] while (++k <= right && a[k - 1] >= a[k] ); build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:111830: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] for (var n=1; (n<<=1) < count; odd=($b$[0] = odd^(1), $b$[0])) ; build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:111861: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] for (var i=right, lo=run[count - 1]; --i >= lo; b[i + bo]=a[i + ao]) ; build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:111958: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] while (a[++less] < pivot1 ); build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:111959: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] while (a[--great] > pivot2 ); build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:112084: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] while (++k <= right && a[k - 1] <= a[k] ); build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:112086: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] while (++k <= right && a[k - 1] >= a[k] ); build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:112107: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] for (var n=1; (n<<=1) < count; odd=($b$[0] = odd^(1), $b$[0])) ; build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:112138: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] for (var i=right, lo=run[count - 1]; --i >= lo; b[i + bo]=a[i + ao]) ; build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:112235: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] while (a[++less] < pivot1 ); build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:112236: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] while (a[--great] > pivot2 ); build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:126814: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:04:37 [java] if (sm != null ) { build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:126952: WARNING - unreachable code build 08-Jun-2020 23:04:37 [java] return this.e.submit$Runnable(task); build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:131465: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:04:37 [java] if(string.indexOf('\\') < 0 && string.indexOf ('$')<0) ; // ')) build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:131467: WARNING - unreachable code build 08-Jun-2020 23:04:37 [java] var res= Clazz_new_(StringBuffer, [string.length*2]); build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:141703: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:04:37 [java] } else if (!this.opened) { build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:147130: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:04:37 [java] if (heavyParent != null ) { build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:151149: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:04:37 [java] if (this.insideComponent == null ) { build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:154156: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:04:37 [java] if (value != null ) { build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:154162: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:04:37 [java] if (value != null ) { build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:154263: WARNING - unreachable code build 08-Jun-2020 23:04:37 [java] } catch (t) { build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:161864: WARNING - unreachable code build 08-Jun-2020 23:04:37 [java] return null; build 08-Jun-2020 23:04:37 [java] ^ build 08-Jun-2020 23:04:37 [java] build 08-Jun-2020 23:04:37 [java] core_jalview.js:166443: WARNING - Suspicious code. The result of the 'getprop' operator is not being used. build 08-Jun-2020 23:04:37 [java] ;(function(e,t){function i(t,n){var r,i,o,u=t.nodeName.toLowerCase();return"area"===u?(r=t.parentNode,i=r.name,!t.href||!i||r.nodeName.toLowerCase()!=="map"?!1:(o=e("img[usemap=#"+i+"]")[0],!!o&&s(o))):(/input|select|textarea|button|object/.test(u)?!t.disabled:"a"===u?t.href||n:n)&&s(t)}function s(t){return e.expr.filters.visible(t)&&!e(t).parents().andSelf().filter(function(){return e.css(this,"visibility")==="hidden"}).length}var n=0,r=/^ui-id-\d+$/;e.ui=e.ui||{};if(e.ui.version)return;e.extend(e.ui,{version:"1.9.2",keyCode:{BACKSPACE:8,COMMA:188,DELETE:46,DOWN:40,END:35,ENTER:13,ESCAPE:27,HOME:36,LEFT:37,NUMPAD_ADD:107,NUMPAD_DECIMAL:110,NUMPAD_DIVIDE:111,NUMPAD_ENTER:108,NUMPAD_MULTIPLY:106,NUMPAD_SUBTRACT:109,PAGE_DOWN:34,PAGE_UP:33,PERIOD:190,RIGHT:39,SPACE:32,TAB:9,UP:38}}),e.fn.extend({_focus:e.fn.focus,focus:function(t,n){return typeof t=="number"?this.each(function(){var r=this;setTimeout(function(){e(r).focus(),n&&n.call(r)},t)}):this._focus.apply(this,arguments)},scrollParent:function(){var t;return e.ui.ie&&/(static|relative)/.test(this.css("position"))||/absolute/.test(this.css("position"))?t=this.parents().filter(function(){return/(relative|absolute|fixed)/.test(e.css(this,"position"))&&/(auto|scroll)/.test(e.css(this,"overflow")+e.css(this,"overflow-y")+e.css(this,"overflow-x"))}).eq(0):t=this.parents().filter(function(){return/(auto|scroll)/.test(e.css(this,"overflow")+e.css(this,"overflow-y")+e.css(this,"overflow-x"))}).eq(0),/fixed/.test(this.css("position"))||!t.length?e(document):t},zIndex:function(n){if(n!==t)return this.css("zIndex",n);if(this.length){var r=e(this[0]),i,s;while(r.length&&r[0]!==document){i=r.css("position");if(i==="absolute"||i==="relative"||i==="fixed"){s=parseInt(r.css("zIndex"),10);if(!isNaN(s)&&s!==0)return s}r=r.parent()}}return 0},uniqueId:function(){return this.each(function(){this.id||(this.id="ui-id-"+ ++n)})},removeUniqueId:function(){return this.each(function(){r.test(this.id)&&e(this).removeAttr("id")})}}),e.extend(e.expr[":"],{data:e.expr.createPseudo?e.expr.createPseudo(function(t){return function(n){return!!e.data(n,t)}}):function(t,n,r){return!!e.data(t,r[3])},focusable:function(t){return i(t,!isNaN(e.attr(t,"tabindex")))},tabbable:function(t){var n=e.attr(t,"tabindex"),r=isNaN(n);return(r||n>=0)&&i(t,!r)}}),e(function(){var t=document.body,n=t.appendChild(n=document.createElement("div"));n.offsetHeight,e.extend(n.style,{minHeight:"100px",height:"auto",padding:0,borderWidth:0}),e.support.minHeight=n.offsetHeight===100,e.support.selectstart="onselectstart"in n,t.removeChild(n).style.display="none"}),e("").outerWidth(1).jquery||e.each(["Width","Height"],function(n,r){function u(t,n,r,s){return e.each(i,function(){n-=parseFloat(e.css(t,"padding"+this))||0,r&&(n-=parseFloat(e.css(t,"border"+this+"Width"))||0),s&&(n-=parseFloat(e.css(t,"margin"+this))||0)}),n}var i=r==="Width"?["Left","Right"]:["Top","Bottom"],s=r.toLowerCase(),o={innerWidth:e.fn.innerWidth,innerHeight:e.fn.innerHeight,outerWidth:e.fn.outerWidth,outerHeight:e.fn.outerHeight};e.fn["inner"+r]=function(n){return n===t?o["inner"+r].call(this):this.each(function(){e(this).css(s,u(this,n)+"px")})},e.fn["outer"+r]=function(t,n){return typeof t!="number"?o["outer"+r].call(this,t):this.each(function(){e(this).css(s,u(this,t,!0,n)+"px")})}}),e("").data("a-b","a").removeData("a-b").data("a-b")&&(e.fn.removeData=function(t){return function(n){return arguments.length?t.call(this,e.camelCase(n)):t.call(this)}}(e.fn.removeData)),function(){var t=/msie ([\w.]+)/.exec(navigator.userAgent.toLowerCase())||[];e.ui.ie=t.length?!0:!1,e.ui.ie6=parseFloat(t[1],10)===6}(),e.fn.extend({disableSelection:function(){return this.bind((e.support.selectstart?"selectstart":"mousedown")+".ui-disableSelection",function(e){e.preventDefault()})},enableSelection:function(){return this.unbind(".ui-disableSelection")}}),e.extend(e.ui,{plugin:{add:function(t,n,r){var i,s=e.ui[t].prototype;for(i in r)s.plugins[i]=s.plugins[i]||[],s.plugins[i].push([n,r[i]])},call:function(e,t,n){var r,i=e.plugins[t];if(!i||!e.element[0].parentNode||e.element[0].parentNode.nodeType===11)return;for(r=0;r0?!0:(t[r]=1,i=t[r]>0,t[r]=0,i)},isOverAxis:function(e,t,n){return e>t&&e 60) { build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:40050: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:05:13 [java] if (parmSet != null ) { build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:40345: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:05:13 [java] if (this.attemptversion1parse) { build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:50659: WARNING - unreachable code build 08-Jun-2020 23:05:13 [java] if (false) { build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:50665: WARNING - unreachable code build 08-Jun-2020 23:05:13 [java] }if (false) { build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:50679: WARNING - unreachable code build 08-Jun-2020 23:05:13 [java] if (false) { build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:50683: WARNING - unreachable code build 08-Jun-2020 23:05:13 [java] }if (false) { build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:53465: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:05:13 [java] if (this.featureGroups == null ) { build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:53499: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:05:13 [java] if (rdrw) { build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:54624: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:05:13 [java] if (this.ap != null ) { build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:60089: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:05:13 [java] if ((this.eventMask & 4096) != 0) { build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:65108: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:05:13 [java] /*sync org.eclipse.jdt.core.dom.ConditionalExpression*/((prev != null ) ? prev : this); build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:65108: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:05:13 [java] /*sync org.eclipse.jdt.core.dom.ConditionalExpression*/((prev != null ) ? prev : this); build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:65108: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:05:13 [java] /*sync org.eclipse.jdt.core.dom.ConditionalExpression*/((prev != null ) ? prev : this); build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:88445: WARNING - unreachable code build 08-Jun-2020 23:05:13 [java] if (b.isOneInt$()) return b.intValue$(); build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:91031: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] for (i=0; (b=p$1.getInt$I.apply(this, [i])) == 0; i++) ; build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:91367: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] for (keep=0; keep < vlen && val[keep] == 0 ; keep++) ; build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:91374: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] for (keep=0; keep < vlen && val[keep] == 0 ; keep++) ; build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:91434: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] for (keep=0; keep < a.length && a[keep] == -1 ; keep++) ; build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:91435: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] for (j=keep; j < a.length && a[j] == 0 ; j++) ; build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:91440: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] for (var i=result.length - 1; ++result[i] == 0; i--) ; build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:91465: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] for (i=mlen - 1; i >= 0 && this.mag[i] == 0 ; i--) ; build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:96449: WARNING - Suspicious code. The result of the 'getelem' operator is not being used. build 08-Jun-2020 23:05:13 [java] (($b$[0]=++groupingCount,groupingCount=$b$[0],$b$[0])); build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:96455: WARNING - Suspicious code. The result of the 'getelem' operator is not being used. build 08-Jun-2020 23:05:13 [java] (($b$[0]=++groupingCount,groupingCount=$b$[0],$b$[0])); build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:96469: WARNING - Suspicious code. The result of the 'getelem' operator is not being used. build 08-Jun-2020 23:05:13 [java] (($b$[0]=++this.minExponentDigits,this.minExponentDigits=$b$[0],$b$[0])); build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:97122: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] for (right=len - 1; right >= 0 && this.digits[right] == "0" ; --right) ; build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:99072: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] while (this.poll$() != null ); build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:108148: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] while (++k <= right && a[k - 1] <= a[k] ); build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:108150: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] while (++k <= right && a[k - 1] >= a[k] ); build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:108171: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] for (var n=1; (n<<=1) < count; odd=($b$[0] = odd^(1), $b$[0])) ; build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:108202: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] for (var i=right, lo=run[count - 1]; --i >= lo; b[i + bo]=a[i + ao]) ; build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:108299: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] while (a[++less] < pivot1); build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:108300: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] while (a[--great] > pivot2); build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:108391: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] while (++k <= right && a[k - 1] <= a[k] ); build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:108393: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] while (++k <= right && a[k - 1] >= a[k] ); build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:108414: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] for (var n=1; (n<<=1) < count; odd=($b$[0] = odd^(1), $b$[0])) ; build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:108445: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] for (var i=right, lo=run[count - 1]; --i >= lo; b[i + bo]=a[i + ao]) ; build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:108542: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] while (a[++less] < pivot1); build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:108543: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] while (a[--great] > pivot2); build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:108628: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] for (var i=left - 1; ++i <= right; count[a[i] - -32768]++) ; build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:108630: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] while (count[--i] == 0); build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:108650: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] while (++k <= right && a[k - 1] <= a[k] ); build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:108652: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] while (++k <= right && a[k - 1] >= a[k] ); build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:108673: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] for (var n=1; (n<<=1) < count; odd=($b$[0] = odd^(1), $b$[0])) ; build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:108704: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] for (var i=right, lo=run[count - 1]; --i >= lo; b[i + bo]=a[i + ao]) ; build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:108801: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] while (a[++less] < pivot1); build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:108802: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] while (a[--great] > pivot2); build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:108887: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] for (var i=left - 1; ++i <= right; count[(a[i]).$c()]++) ; build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:108889: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] while (count[--i] == 0); build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:108909: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] while (++k <= right && a[k - 1] <= a[k] ); build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:108911: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] while (++k <= right && a[k - 1] >= a[k] ); build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:108932: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] for (var n=1; (n<<=1) < count; odd=($b$[0] = odd^(1), $b$[0])) ; build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:108963: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] for (var i=right, lo=run[count - 1]; --i >= lo; b[i + bo]=a[i + ao]) ; build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:109060: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] while (a[++less] < pivot1); build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:109061: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] while (a[--great] > pivot2); build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:109146: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] for (var i=left - 1; ++i <= right; count[a[i] - -128]++) ; build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:109148: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] while (count[--i] == 0); build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:109210: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] while (++k <= right && a[k - 1] <= a[k] ); build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:109212: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] while (++k <= right && a[k - 1] >= a[k] ); build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:109233: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] for (var n=1; (n<<=1) < count; odd=($b$[0] = odd^(1), $b$[0])) ; build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:109264: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] for (var i=right, lo=run[count - 1]; --i >= lo; b[i + bo]=a[i + ao]) ; build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:109361: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] while (a[++less] < pivot1 ); build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:109362: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] while (a[--great] > pivot2 ); build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:109487: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] while (++k <= right && a[k - 1] <= a[k] ); build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:109489: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] while (++k <= right && a[k - 1] >= a[k] ); build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:109510: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] for (var n=1; (n<<=1) < count; odd=($b$[0] = odd^(1), $b$[0])) ; build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:109541: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] for (var i=right, lo=run[count - 1]; --i >= lo; b[i + bo]=a[i + ao]) ; build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:109638: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] while (a[++less] < pivot1 ); build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:109639: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] while (a[--great] > pivot2 ); build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:124217: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:05:13 [java] if (sm != null ) { build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:124355: WARNING - unreachable code build 08-Jun-2020 23:05:13 [java] return this.e.submit$Runnable(task); build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:128868: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:13 [java] if(string.indexOf('\\') < 0 && string.indexOf ('$')<0) ; // ')) build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:128870: WARNING - unreachable code build 08-Jun-2020 23:05:13 [java] var res= Clazz_new_(StringBuffer, [string.length*2]); build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:138615: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:05:13 [java] } else if (!this.opened) { build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:144042: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:05:13 [java] if (heavyParent != null ) { build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:148061: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:05:13 [java] if (this.insideComponent == null ) { build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:150991: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:05:13 [java] if (value != null ) { build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:150997: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:05:13 [java] if (value != null ) { build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:151098: WARNING - unreachable code build 08-Jun-2020 23:05:13 [java] } catch (t) { build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:158502: WARNING - unreachable code build 08-Jun-2020 23:05:13 [java] return null; build 08-Jun-2020 23:05:13 [java] ^ build 08-Jun-2020 23:05:13 [java] build 08-Jun-2020 23:05:13 [java] corejalview.js:162875: WARNING - Suspicious code. The result of the 'getprop' operator is not being used. build 08-Jun-2020 23:05:13 [java] ;(function(e,t){function i(t,n){var r,i,o,u=t.nodeName.toLowerCase();return"area"===u?(r=t.parentNode,i=r.name,!t.href||!i||r.nodeName.toLowerCase()!=="map"?!1:(o=e("img[usemap=#"+i+"]")[0],!!o&&s(o))):(/input|select|textarea|button|object/.test(u)?!t.disabled:"a"===u?t.href||n:n)&&s(t)}function s(t){return e.expr.filters.visible(t)&&!e(t).parents().andSelf().filter(function(){return e.css(this,"visibility")==="hidden"}).length}var n=0,r=/^ui-id-\d+$/;e.ui=e.ui||{};if(e.ui.version)return;e.extend(e.ui,{version:"1.9.2",keyCode:{BACKSPACE:8,COMMA:188,DELETE:46,DOWN:40,END:35,ENTER:13,ESCAPE:27,HOME:36,LEFT:37,NUMPAD_ADD:107,NUMPAD_DECIMAL:110,NUMPAD_DIVIDE:111,NUMPAD_ENTER:108,NUMPAD_MULTIPLY:106,NUMPAD_SUBTRACT:109,PAGE_DOWN:34,PAGE_UP:33,PERIOD:190,RIGHT:39,SPACE:32,TAB:9,UP:38}}),e.fn.extend({_focus:e.fn.focus,focus:function(t,n){return typeof t=="number"?this.each(function(){var r=this;setTimeout(function(){e(r).focus(),n&&n.call(r)},t)}):this._focus.apply(this,arguments)},scrollParent:function(){var t;return e.ui.ie&&/(static|relative)/.test(this.css("position"))||/absolute/.test(this.css("position"))?t=this.parents().filter(function(){return/(relative|absolute|fixed)/.test(e.css(this,"position"))&&/(auto|scroll)/.test(e.css(this,"overflow")+e.css(this,"overflow-y")+e.css(this,"overflow-x"))}).eq(0):t=this.parents().filter(function(){return/(auto|scroll)/.test(e.css(this,"overflow")+e.css(this,"overflow-y")+e.css(this,"overflow-x"))}).eq(0),/fixed/.test(this.css("position"))||!t.length?e(document):t},zIndex:function(n){if(n!==t)return this.css("zIndex",n);if(this.length){var r=e(this[0]),i,s;while(r.length&&r[0]!==document){i=r.css("position");if(i==="absolute"||i==="relative"||i==="fixed"){s=parseInt(r.css("zIndex"),10);if(!isNaN(s)&&s!==0)return s}r=r.parent()}}return 0},uniqueId:function(){return this.each(function(){this.id||(this.id="ui-id-"+ ++n)})},removeUniqueId:function(){return this.each(function(){r.test(this.id)&&e(this).removeAttr("id")})}}),e.extend(e.expr[":"],{data:e.expr.createPseudo?e.expr.createPseudo(function(t){return function(n){return!!e.data(n,t)}}):function(t,n,r){return!!e.data(t,r[3])},focusable:function(t){return i(t,!isNaN(e.attr(t,"tabindex")))},tabbable:function(t){var n=e.attr(t,"tabindex"),r=isNaN(n);return(r||n>=0)&&i(t,!r)}}),e(function(){var t=document.body,n=t.appendChild(n=document.createElement("div"));n.offsetHeight,e.extend(n.style,{minHeight:"100px",height:"auto",padding:0,borderWidth:0}),e.support.minHeight=n.offsetHeight===100,e.support.selectstart="onselectstart"in n,t.removeChild(n).style.display="none"}),e("").outerWidth(1).jquery||e.each(["Width","Height"],function(n,r){function u(t,n,r,s){return e.each(i,function(){n-=parseFloat(e.css(t,"padding"+this))||0,r&&(n-=parseFloat(e.css(t,"border"+this+"Width"))||0),s&&(n-=parseFloat(e.css(t,"margin"+this))||0)}),n}var i=r==="Width"?["Left","Right"]:["Top","Bottom"],s=r.toLowerCase(),o={innerWidth:e.fn.innerWidth,innerHeight:e.fn.innerHeight,outerWidth:e.fn.outerWidth,outerHeight:e.fn.outerHeight};e.fn["inner"+r]=function(n){return n===t?o["inner"+r].call(this):this.each(function(){e(this).css(s,u(this,n)+"px")})},e.fn["outer"+r]=function(t,n){return typeof t!="number"?o["outer"+r].call(this,t):this.each(function(){e(this).css(s,u(this,t,!0,n)+"px")})}}),e("").data("a-b","a").removeData("a-b").data("a-b")&&(e.fn.removeData=function(t){return function(n){return arguments.length?t.call(this,e.camelCase(n)):t.call(this)}}(e.fn.removeData)),function(){var t=/msie ([\w.]+)/.exec(navigator.userAgent.toLowerCase())||[];e.ui.ie=t.length?!0:!1,e.ui.ie6=parseFloat(t[1],10)===6}(),e.fn.extend({disableSelection:function(){return this.bind((e.support.selectstart?"selectstart":"mousedown")+".ui-disableSelection",function(e){e.preventDefault()})},enableSelection:function(){return this.unbind(".ui-disableSelection")}}),e.extend(e.ui,{plugin:{add:function(t,n,r){var i,s=e.ui[t].prototype;for(i in r)s.plugins[i]=s.plugins[i]||[],s.plugins[i].push([n,r[i]])},call:function(e,t,n){var r,i=e.plugins[t];if(!i||!e.element[0].parentNode||e.element[0].parentNode.nodeType===11)return;for(r=0;r0?!0:(t[r]=1,i=t[r]>0,t[r]=0,i)},isOverAxis:function(e,t,n){return e>t&&e 60) { build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:67713: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:05:59 [java] if (parmSet != null ) { build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:68008: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:05:59 [java] if (this.attemptversion1parse) { build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:80191: WARNING - unreachable code build 08-Jun-2020 23:05:59 [java] if (false) { build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:80197: WARNING - unreachable code build 08-Jun-2020 23:05:59 [java] }if (false) { build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:80211: WARNING - unreachable code build 08-Jun-2020 23:05:59 [java] if (false) { build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:80215: WARNING - unreachable code build 08-Jun-2020 23:05:59 [java] }if (false) { build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:83137: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:05:59 [java] if (this.featureGroups == null ) { build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:83171: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:05:59 [java] if (rdrw) { build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:84346: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:05:59 [java] if (this.ap != null ) { build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:84432: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:05:59 [java] if (this.ap != null ) { build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:85029: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:05:59 [java] if (expectedCdsLength != cdspos) { build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:109619: WARNING - unreachable code build 08-Jun-2020 23:05:59 [java] if (b.isOneInt$()) return b.intValue$(); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:112205: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] for (i=0; (b=p$1.getInt$I.apply(this, [i])) == 0; i++) ; build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:112541: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] for (keep=0; keep < vlen && val[keep] == 0 ; keep++) ; build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:112548: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] for (keep=0; keep < vlen && val[keep] == 0 ; keep++) ; build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:112608: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] for (keep=0; keep < a.length && a[keep] == -1 ; keep++) ; build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:112609: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] for (j=keep; j < a.length && a[j] == 0 ; j++) ; build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:112614: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] for (var i=result.length - 1; ++result[i] == 0; i--) ; build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:112639: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] for (i=mlen - 1; i >= 0 && this.mag[i] == 0 ; i--) ; build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:118541: WARNING - Suspicious code. The result of the 'getelem' operator is not being used. build 08-Jun-2020 23:05:59 [java] (($b$[0]=++groupingCount,groupingCount=$b$[0],$b$[0])); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:118547: WARNING - Suspicious code. The result of the 'getelem' operator is not being used. build 08-Jun-2020 23:05:59 [java] (($b$[0]=++groupingCount,groupingCount=$b$[0],$b$[0])); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:118561: WARNING - Suspicious code. The result of the 'getelem' operator is not being used. build 08-Jun-2020 23:05:59 [java] (($b$[0]=++this.minExponentDigits,this.minExponentDigits=$b$[0],$b$[0])); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:119214: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] for (right=len - 1; right >= 0 && this.digits[right] == "0" ; --right) ; build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:120352: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] while (this.poll$() != null ); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:122958: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] while (++k <= right && a[k - 1] <= a[k] ); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:122960: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] while (++k <= right && a[k - 1] >= a[k] ); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:122981: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] for (var n=1; (n<<=1) < count; odd=($b$[0] = odd^(1), $b$[0])) ; build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:123012: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] for (var i=right, lo=run[count - 1]; --i >= lo; b[i + bo]=a[i + ao]) ; build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:123109: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] while (a[++less] < pivot1); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:123110: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] while (a[--great] > pivot2); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:123201: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] while (++k <= right && a[k - 1] <= a[k] ); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:123203: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] while (++k <= right && a[k - 1] >= a[k] ); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:123224: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] for (var n=1; (n<<=1) < count; odd=($b$[0] = odd^(1), $b$[0])) ; build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:123255: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] for (var i=right, lo=run[count - 1]; --i >= lo; b[i + bo]=a[i + ao]) ; build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:123352: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] while (a[++less] < pivot1); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:123353: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] while (a[--great] > pivot2); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:123438: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] for (var i=left - 1; ++i <= right; count[a[i] - -32768]++) ; build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:123440: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] while (count[--i] == 0); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:123460: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] while (++k <= right && a[k - 1] <= a[k] ); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:123462: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] while (++k <= right && a[k - 1] >= a[k] ); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:123483: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] for (var n=1; (n<<=1) < count; odd=($b$[0] = odd^(1), $b$[0])) ; build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:123514: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] for (var i=right, lo=run[count - 1]; --i >= lo; b[i + bo]=a[i + ao]) ; build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:123611: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] while (a[++less] < pivot1); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:123612: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] while (a[--great] > pivot2); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:123697: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] for (var i=left - 1; ++i <= right; count[(a[i]).$c()]++) ; build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:123699: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] while (count[--i] == 0); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:123719: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] while (++k <= right && a[k - 1] <= a[k] ); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:123721: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] while (++k <= right && a[k - 1] >= a[k] ); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:123742: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] for (var n=1; (n<<=1) < count; odd=($b$[0] = odd^(1), $b$[0])) ; build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:123773: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] for (var i=right, lo=run[count - 1]; --i >= lo; b[i + bo]=a[i + ao]) ; build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:123870: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] while (a[++less] < pivot1); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:123871: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] while (a[--great] > pivot2); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:123956: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] for (var i=left - 1; ++i <= right; count[a[i] - -128]++) ; build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:123958: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] while (count[--i] == 0); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:124020: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] while (++k <= right && a[k - 1] <= a[k] ); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:124022: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] while (++k <= right && a[k - 1] >= a[k] ); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:124043: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] for (var n=1; (n<<=1) < count; odd=($b$[0] = odd^(1), $b$[0])) ; build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:124074: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] for (var i=right, lo=run[count - 1]; --i >= lo; b[i + bo]=a[i + ao]) ; build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:124171: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] while (a[++less] < pivot1 ); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:124172: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] while (a[--great] > pivot2 ); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:124297: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] while (++k <= right && a[k - 1] <= a[k] ); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:124299: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] while (++k <= right && a[k - 1] >= a[k] ); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:124320: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] for (var n=1; (n<<=1) < count; odd=($b$[0] = odd^(1), $b$[0])) ; build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:124351: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] for (var i=right, lo=run[count - 1]; --i >= lo; b[i + bo]=a[i + ao]) ; build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:124448: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] while (a[++less] < pivot1 ); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:124449: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] while (a[--great] > pivot2 ); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:134614: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:05:59 [java] if (sm != null ) { build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:134752: WARNING - unreachable code build 08-Jun-2020 23:05:59 [java] return this.e.submit$Runnable(task); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:139314: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] if(string.indexOf('\\') < 0 && string.indexOf ('$')<0) ; // ')) build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:139316: WARNING - unreachable code build 08-Jun-2020 23:05:59 [java] var res= Clazz_new_(StringBuffer, [string.length*2]); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:148060: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:05:59 [java] } else if (!this.opened) { build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:153784: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:05:59 [java] if (this.editorRemover == null ) { build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:156224: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:05:59 [java] if (heavyParent != null ) { build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:159924: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:05:59 [java] if (this.insideComponent == null ) { build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:165518: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:05:59 [java] if (this.b$['javax.swing.text.DefaultCaret'].width == 0 || this.b$['javax.swing.text.DefaultCaret'].height == 0 ) { build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:165519: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:05:59 [java] if (this.b$['javax.swing.text.DefaultCaret'].component != null ) { build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:168512: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] while (iterator.getAttribute$java_text_AttributedCharacterIterator_Attribute(field) == null && iterator.next$() != "\uffff" ); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:168534: WARNING - If this if/for/while really shouldnt have a body, use {} build 08-Jun-2020 23:05:59 [java] while (iterator.getAttribute$java_text_AttributedCharacterIterator_Attribute(field) == null && iterator.next$() != "\uffff" ); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:169330: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:05:59 [java] if (l != null ) { build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:173312: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:05:59 [java] if (value != null ) { build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:173318: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:05:59 [java] if (value != null ) { build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:173419: WARNING - unreachable code build 08-Jun-2020 23:05:59 [java] } catch (t) { build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:174884: WARNING - unreachable code build 08-Jun-2020 23:05:59 [java] }}if (false) { build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:179486: WARNING - unreachable code build 08-Jun-2020 23:05:59 [java] var os=System.getProperty$S("os.name"); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:212588: WARNING - Suspicious code. The result of the 'getelem' operator is not being used. build 08-Jun-2020 23:05:59 [java] (($s$[0]=++this.lineCurrent,this.lineCurrent=$s$[0],$s$[0])); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:255819: WARNING - unreachable code build 08-Jun-2020 23:05:59 [java] $I$(10).currentThread$().wait$J(100); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:264693: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:05:59 [java] }return (1,o.__CLASS_NAME__ ? o :C$.toMap$O(o)); build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:268729: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:05:59 [java] if (newValue === Boolean.TRUE ) { build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:268737: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:05:59 [java] }} else if (prop === "ancestor" ) { build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] corejvexamplefile.js:268738: WARNING - Suspicious code. This code lacks side-effects. Is there a bug? build 08-Jun-2020 23:05:59 [java] } else if ("title" == prop || prop === "closable" || prop === "iconable" || prop === "maximizable" ) { build 08-Jun-2020 23:05:59 [java] ^ build 08-Jun-2020 23:05:59 [java] build 08-Jun-2020 23:05:59 [java] 0 error(s), 107 warning(s) build 08-Jun-2020 23:06:00 [delete] Deleting: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JB3-JOB1/site/swingjs/js/core/tmp.js build 08-Jun-2020 23:06:00 build 08-Jun-2020 23:06:00 publish-core-template: build 08-Jun-2020 23:06:00 [echo] ......Now copying site/jalview_bin_Jalview.html as JalviewJS_jvexamplefile.html with core:"jvexamplefile", added to the Info block. build 08-Jun-2020 23:06:00 [copy] Copying 1 file to /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JB3-JOB1/site build 08-Jun-2020 23:06:00 build 08-Jun-2020 23:06:00 build-site: build 08-Jun-2020 23:06:00 [tar] Building tar: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JB3-JOB1/site.tar.gz build 08-Jun-2020 23:06:04 build 08-Jun-2020 23:06:04 BUILD SUCCESSFUL build 08-Jun-2020 23:06:04 Total time: 3 minutes 53 seconds simple 08-Jun-2020 23:06:04 Finished task 'run jalviewjs build' with result: Success simple 08-Jun-2020 23:06:04 Running post build plugin 'NCover Results Collector' simple 08-Jun-2020 23:06:04 Running post build plugin 'Artifact Copier' simple 08-Jun-2020 23:06:04 Publishing an artifact: jalviewjs-site.tar.gz simple 08-Jun-2020 23:06:04 Finished publishing of artifact Shared artifact: [jalviewjs-site.tar.gz], pattern: [site.tar.gz] anchored at: [./] in 68.54 ms simple 08-Jun-2020 23:06:04 Publishing an artifact: jalviewjs simple 08-Jun-2020 23:06:05 Finished publishing of artifact Shared artifact: [jalviewjs], pattern: [**/*] anchored at: [site/] in 1.466 s simple 08-Jun-2020 23:06:05 Running post build plugin 'Artifactory Release Management Staging' simple 08-Jun-2020 23:06:05 Running post build plugin 'Artifactory Build Info Copier' simple 08-Jun-2020 23:06:05 Running post build plugin 'Artifactory Gradle Properties Info Copier' simple 08-Jun-2020 23:06:05 Running post build plugin 'npm Cache Cleanup' simple 08-Jun-2020 23:06:05 Running post build plugin 'Clover Results Collector' simple 08-Jun-2020 23:06:05 Running post build plugin 'Docker Container Cleanup' simple 08-Jun-2020 23:06:06 Successfully removed working directory at '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-JB3-JOB1' simple 08-Jun-2020 23:06:06 Finalising the build... simple 08-Jun-2020 23:06:06 Stopping timer. simple 08-Jun-2020 23:06:06 Build JB-JB3-JOB1-186 completed. simple 08-Jun-2020 23:06:06 Running on server: post build plugin 'NCover Results Collector' simple 08-Jun-2020 23:06:06 Running on server: post build plugin 'Build Hanging Detection Configuration' simple 08-Jun-2020 23:06:06 Running on server: post build plugin 'Clover Delta Calculator' simple 08-Jun-2020 23:06:06 Running on server: post build plugin 'Maven Dependencies Postprocessor' simple 08-Jun-2020 23:06:06 All post build plugins have finished simple 08-Jun-2020 23:06:06 Generating build results summary... simple 08-Jun-2020 23:06:06 Saving build results to disk... simple 08-Jun-2020 23:06:06 Logging substituted variables... simple 08-Jun-2020 23:06:06 Indexing build results... simple 08-Jun-2020 23:06:06 Finished building JB-JB3-JOB1-186.